These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence [TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGTTCTCCAAATAAACTTTGCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTTTCATACAGAAAAACATTTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGGTTAACACCACCCCTTTAAGTAAATACCACATAAATATCTTGATCTTAAGCAACAACTTAAGCTTCTAATAATCTTATTTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTGACCTAACAGAAAAACCAACCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTTATTCAACTGGATATGAACAATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACCAACTAAAGCTATGCTAAAAGAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGGAGAACTTCTCCTTCTAACAATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTTTCCTAACCATTTATCTTCCCAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACACATACTTAAGAAAGTATTTTGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGTTTCCTATCAACTTGAGTTATAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGCCAAACACCATTCTCGTTTATTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGAATCTCTAGATTAAGTACCCCAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA] [+] EMBL CB628017 [TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGTTCTCCAAATAAACTTTGCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTTTCATACAGAAAAACATTTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGGTTAACACCACCCCTTTAAGTAAATACCACATAAATATCTTGATCTTAAGCAACAACTTAAGCTTCTAATAATCTTATTTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTGACCTAACAGAAAAACCAACCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTTATTCAACTGGATATGAACAATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACCAACTAAAGCTATGCTAAAAGAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGGAGAACTTCTCCTTCTAACAATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTTTCCTAACCATTTATCTTCCCAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACACATACTTAAGAAAGTATTTTGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGTTTCCTATCAACTTGAGTTATAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGCCAAACACCATTCTCGTTTATTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGAATCTCTAGATTAAGTACCCCAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA] consensusID : consensus_8311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 618 fasta sequence [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACCT] [+] EMBL CF304434 [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACCT] [+] EMBL CF303966 [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAGCGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACC ] [+] EMBL CF303401 [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGATGAAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAAATGCTCACAACACATACACTCACCCTATAAATACATACATGTA ] [+] EMBL CF304864 [TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCAACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGCTATCCAAATAAACTTTGCATAATGACACTCCATAAATAAATGTTGAATAGTCTCATTTTTCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTGTTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTGCTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCTACCTACTCCTATTAACCAATCATTTCTTGGATTATCTATTTCTTCAATCATTTCCACTTACTTTTATAATACCTGTACTCACCTAACAAATATTTCATTTCGAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8311#0 ------------------------------------------------------------ consensus_8311#1 TAAAATAGAGGCTCCAACAAGTATCAGTTTACTCTTTTTCTTGTCAACCCCTAGAAGCCA 60 consensus_8311#0 ----------------TATATGCTACTAGAAAGGTATAGTCCAAAAGAGAACTGAACTGT 44 consensus_8311#1 ACCATAAAAAATATCAGATATGCTACTAGGAAGGTGTAATCCAAAAGAGAACTGGACTGC 120 ************ ***** ** *************** **** consensus_8311#0 TCTCCAAATAAACTTTGCATAATGATATTCCATAAAATAAATGTTGAATAGTATCATTTT 104 consensus_8311#1 TATCCAAATAAACTTTGCATAATGACACTCCATAAA-TAAATGTTGAATAGTCTCATTTT 179 * *********************** * ******** *************** ******* consensus_8311#0 TCATACAGAAA-AACATTTTAGACTAACATTCTAATTTCGTCTTGCCAAATTGTCCTTGG 163 consensus_8311#1 TCATACAGAAACAACATTTTAGACTACCATTCCAATTCCGTCTTGCTAAATTATCCTTG- 238 *********** ************** ***** **** ******** ***** ****** consensus_8311#0 TTAACACCACCCCTTTAAGTAAATACCACATAAATATCTTG-ATCTTAAGCAACAACTTA 222 consensus_8311#1 TTAACACCACCTCTTTAAGCAAGTAACACATAAAGATTTTTTATCTTGATCTTGATCTTG 298 *********** ******* ** ** ******** ** ** ***** * * * *** consensus_8311#0 AGCTTCTAATAATCTTATTTCTGTCAATGTAACCATTATTAATTAGAGATAAGTACATTG 282 consensus_8311#1 CTCCACAGTTGATAAGGCATGCAAAATTAAACATAATAGCAAACTTGTTAATCTCCATCT 358 * * * ** * * * * * ** ** * * *** consensus_8311#0 ACCTAA-CAGAAAAACCAACCACTCTGATGATAACTCCATCTAAAATAATCAGAAGAGTT 341 consensus_8311#1 ACCTACTCCTATTAACCAATCATTTCTTGGATTA-TCTATTTCTT-CAATCAT------- 409 ***** * * ****** ** * *** * ** ** * ***** consensus_8311#0 ATTCAACTGGATATGAACAATAGAAACACACAATTCATGTCAATATGTTAGATTCTGACC 401 consensus_8311#1 -TTCCACTTACTTTTA-TAATACCTGTACTCACCTAACA--AATATTTCATTTCGAGATG 465 *** *** * * * **** ** ** * * ***** * * * ** consensus_8311#0 AACTAAAGCTATGCTAAAAGAAACGTTAAGCGGAACAGAACCCATAACACTAGCAATAGG 461 consensus_8311#1 AAATGCATGTGTTCTCTTTAAAAAACCAAGGATAATGTAA------ATGCTCACAACACA 519 ** * * * * ** *** *** ** ** * ** *** * consensus_8311#0 AGAACTTCTCCTTCTAACAATAGCATATAAAGATGGATATTTATCTCTAAAGACCAAGTT 521 consensus_8311#1 TACACTCACCCTATAAATACATACATGTATACCCTAATTCTTAGCACCTTCGAGATTGAG 579 *** *** ** * *** ** * ** *** * * ** * consensus_8311#0 TCCTAACCATTTATCTTCCCAAAATCTTATTTGTTCCCTATTATTCACAATCCAAGAACA 581 consensus_8311#1 CGGTAAATCATGAAATTGACAAAGTCGCCATGGGTACCT--------------------- 618 *** * * ** **** ** * * * *** consensus_8311#0 CATACTTAAGAAAGTATTTTGACTTTCATAAGTCCTGACCAAAAATGAGAATCACATTGT 641 consensus_8311#1 ------------------------------------------------------------ consensus_8311#0 TTCCTATCAACTTGAGTTATAAACTTATTATAAAGTTATTTTCTCTTCAATAAGTCTTGC 701 consensus_8311#1 ------------------------------------------------------------ consensus_8311#0 CAAACACCATTCTCGTTTATTAATTTATACAACCACTTACTTAAAAGGCATTTATTTTGA 761 consensus_8311#1 ------------------------------------------------------------ consensus_8311#0 ATCTCTAGATTAAGTACCCCAAACCATCCTGGTCTTCGGGTTGGCAAATAATATCCCA 819 consensus_8311#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||