|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8318#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2058 fasta sequence
[AAGGAGTTCATTTGGGACCTATTGCCCCTCCAGAATCTAGTGTGCAAGGAAAGCCTGCCAGTCCACATGGTGCTATTGGTGATGGAAAACTTGAGAAGCCATCGCATGTGAATATTGGTGGTGGTTCCATCTACAAGTCTCAAGCTGGAGGTTATCATTTGGGTATTACTAATGCCTTTTCTGCACCAGCTGAGGACAATCTTGTGAGACATACTGAACAGTCATCTTCAGCTTTTGATTCACAACATCTTCATTCTGAGATAGGCCACCAGCTAAATGTGTTACAGAATGTGCCTGTCTCAAACAACCTTGGTGTACCTGCCAAACCACATATTTCTAACGAAAGATTTCTTGCAAGACCTGCTAGTGCTGGTGTTCAGGTTCCTGTTGAGCATTCTCCAC-TGCGACCTGCGGAAATGC-TGAATCATGTGGTTTCCGCTCCCCCTAATGGCAACAGTCAAATTCCACTGCAGGCGACCGCTGGTATTGATAGTGTGGAAGCCACACGTGATCCAGCTTACACAGATTCTCTATTCTCAAATCAGGATCCTTGGAATGCAGTGGGAAATGCTTCTGTAGCGCCTCCAAGACTGAATAAGTTGGCTAAGGAGCCTGCTGTTTCTGGAGATCCATATGTGGAAGGCCATGGGCTTGCCATCAACAGTTCAAATGCTGCTACACTCTTAGAAGAAGGCAATCTTCCACTCATCCAGGACCGCACTTTTAAGGACATCTATCCTGAACCCTCTCAAATGAGCAAAGGATACGGAGAAGAAACTATTAAGCGACAGTTACAAGCTGTTGCTGAGGGTGTGGCAGCATCTGTCCTTCAGTCACCTTTCCCTGAAAAACCAACCGTATTCTCTGGTGATCACACAGATAAACAAGGAGCTGTAATTGATCCAAAATTGGAGGATGCGGTGAACAATCAATCAGACAAAACAAGCCAAGGAGTTAAAGTTTTAGATGATATTGATAATCTTCAGATAATAAAGAATAGTGATCTAGAAGAATTGCGGGAACTGGGTTCTGGAACCTTTGGTACTGTTTACCATGGAAAATGGAGAGGTTCCGATGTTGCTATAAAAAGGATCAATGATCGATGCTTTGCTGGGAAGGCATCTGAGCAAGAGCGGATGAGAACTGATTTCTGGAATGAAGCTGACAAGCTTGCATCATTGCACCATCCGAATGTTGTAGCTTTCTATGGTGTTGTACTGGATGGACCAGGTGGATCTGTTGCAACAGTAACTGAATACATGGCTAATGGTTCTCTTCGACAAGCATTGCAAAGACATGAAAAGATATTTGATCGGCGTAGGCGTCTCCTGATTGCAATGGATGTTGCGTTTGGTATGGAGTATTTGCATGAGAAGAACATTGTACACTTTGACCTAAAGAGTGATAATCTGCTTGTCAATCTAAGAGATCCTCAGCACCCTATATGCAAGGTTGGTGATTTGGGCTTGTCGAAAGTTAAATGCCAGACGCTAATATCTGGTGGGGTGCGAGGAACACTTCCTTGGATGGCCCCGGAGCTGTTGAATGGAAGCAGCAGCCTTGTTTCTGAAAAGGTCGATGTTTTCTCCTTCGGAATTGTAATGTGGGAGCTGCTCACTGGTGAAGAGCCTTATGCCGAATTGCATTATGGCGCCATCATAGGCGGGATTGTAAACAACACCCTGCGCCCTCCGGTGCCCGAGTCATGCGACCCTCGGTGGAGGTCACTGATGGAGCAATGCTGGTCGTCGGAACCGTCAGAAAGACCGAGCTTCACGGAGGTTGGCAAGAGGCTACGGGCCATGGCAACCCCCTCTACCAAGGCGCAACCTCAGAAATAAAA-TTTTTTTTTTTGCCCCCTCAACCTCCTGTTCTGCGGCCTGTCTCCTGTACAAAATCTTGGAAGGGAGCCATGGCTTGCTCTGTACTAGTCTGTACATGAATAAGGTAAAAAAGAGAAGAGAAAAAAAATGGTAATGCCTATAGAGATGATGACGAATGCTTGATCCTCCCTGTGAGGTTGTGACGCTTTTCAAAAGGACGATGCATGGCAATGGT]
[+] EMBL CB647701 [AAGGAGTTCATTTGGGACCTATTGCCCCTCCAGAATCTAGTGTGCAAGGAAAGCCTGCCAGTCCACATGGTGCTATTGGTGATGGAAAACTTGAGAAGCCATCGCATGTGAATATTGGTGGTGGTTCCATCTACAAGTCTCAAGCTGGAGGTTATCATTTGGGTATTACTAATGCCTTTTCTGCACCAGCTGAGGACAATCTTGTGAGACATACTGAACAGTCATCTTCAGCTTTTGATTCACAACATCTTCATTCTGAGATAGGCCACCAGCTAAATGTGTTACAGAATGTGCCTGTCTCAAACAACCTTGGTGTACCTGCCAAACCACATATTTCTAACGAAAGATTTCTTGCAAGACCTGCTAGTGCTGGTGTTCAGGTTCCTGTTGAGCATTCTCCAC TGCGACCTGCGGAAATGC TGAATCATGTGGTTTCCGCTCCCCCTAATGGCAACAGTCAAATTCCACTGCAGGCGACCGCTGGTATTGATAGTGTGGAAGCCACACGTGATCCAGCTTACACAGATTCTCTATTCTCAAATCAGGATCCTTGGAATGCAGTGGGAAATGCTTCTGTAGCGCCTCCAAGACTGAATAAGTTGGCTAAGGAGCCTGCTGTTTCTGGAGATCCATATGTGGAAGGCCATGGGCTTGCCATCAACAGTTCAAATGCTGCTACACTCTTAGAAGAAGGCAATCTTCCACTCATCCAGGACCGCACTTTTAAGGACATCTATCCTGAACCCTCTCAAATGAGCAAAGGATACGGAGAAGAAACTATTAAGCGACAGTTACAAGCTGTTGCTGAGGGTGTGGCAG ]
[+] EMBL OSC24691 [ AAGCCATCGCATGTGAATATTGGTGGTGGTTCCATCTACAAGTCTCAAGCTGGAGGTTATCATTTGGGTATTACTAATGCCTTTTCTGCACCAGCTGAGGACAATCTTGTGAGACATACTGAACAGTCATCTTCAGCTTTTGATTCACAACATCTTCATTCTGAGATAGGCCACCAGCTAAATGTGTTACAGAATGTGCCTGTCTCAAACAACCTTGGTGTACCTGCCAAACCACATATTTCTAACGAAAGATTTCTTGCAAGACCTGCTAGTGCTGGTGTTCAGGTTCCTGTTGAGCATTCTCCACTTGCGACCTGAGGAAATGCTTGAATCAT ]
[+] EMBL AK067771 [ TGTTCAGGTTCCTGTTGAGCATTCTCCAC TGCGACCTGCGGAAATGC TGAATCATGTGGTTTCCGCTCCCCCTAATGGCAACAGTCAAATTCCACTGCAGGCGACCGCTGGTATTGATAGTGTGGAAGCCACACGTGATCCAGCTTACACAGATTCTCTATTCTCAAATCAGGATCCTTGGAATGCAGTGGGAAATGCTTCTGTAGCGCCTCCAAGACTGAATAAGTTGGCTAAGGAGCCTGCTGTTTCTGGAGATCCATATGTGGAAGGCCATGGGCTTGCCATCAACAGTTCAAATGCTGCTACACTCTTAGAAGAAGGCAATCTTCCACTCATCCAGGACCGCACTTTTAAGGACATCTATCCTGAACCCTCTCAAATGAGCAAAGGATACGGAGAAGAAACTATTAAGCGACAGTTACAAGCTGTTGCTGAGGGTGTGGCAGCATCTGTCCTTCAGTCACCTTTCCCTGAAAAACCAACCGTATTCTCTGGTGATCACACAGATAAACAAGGAGCTGTAATTGATCCAAAATTGGAGGATGCGGTGAACAATCAATCAGACAAAACAAGCCAAGGAGTTAAAGTTTTAGATGATATTGATAATCTTCAGATAATAAAGAATAGTGATCTAGAAGAATTGCGGGAACTGGGTTCTGGAACCTTTGGTACTGTTTACCATGGAAAATGGAGAGGTTCCGATGTTGCTATAAAAAGGATCAATGATCGATGCTTTGCTGGGAAGGCATCTGAGCAAGAGCGGATGAGAACTGATTTCTGGAATGAAGCTGACAAGCTTGCATCATTGCACCATCCGAATGTTGTAGCTTTCTATGGTGTTGTACTGGATGGACCAGGTGGATCTGTTGCAACAGTAACTGAATACATGGCTAATGGTTCTCTTCGACAAGCATTGCAAAGACATGAAAAGATATTTGATCGGCGTAGGCGTCTCCTGATTGCAATGGATGTTGCGTTTGGTATGGAGTATTTGCATGAGAAGAACATTGTACACTTTGACCTAAAGAGTGATAATCTGCTTGTCAATCTAAGAGATCCTCAGCACCCTATATGCAAGGTTGGTGATTTGGGCTTGTCGAAAGTTAAATGCCAGACGCTAATATCTGGTGGGGTGCGAGGAACACTTCCTTGGATGGCCCCGGAGCTGTTGAATGGAAGCAGCAGCCTTGTTTCTGAAAAGGTCGATGTTTTCTCCTTCGGAATTGTAATGTGGGAGCTGCTCACTGGTGAAGAGCCTTATGCCGAATTGCATTATGGCGCCATCATAGGCGGGATTGTAAACAACACCCTGCGCCCTCCGGTGCCCGAGTCATGCGACCCTCGGTGGAGGTCACTGATGGAGCAATGCTGGTCGTCGGAACCGTCAGAAAGACCGAGCTTCACGGAGGTTGGCAAGAGGCTACGGGCCATGGCAACCCCCTCTACCAAGGCGCAACCTCAGAAATAAAA TTTTTTTTTTTGCCCCCTCAACCTCCTGTTCTGCGGCCTGTCTCCTGTACAAAATCTTGGAAGGGAGCCATGGCTTGCTCTGTACTAGTCTGTACATGAATAAGGTAAAAAAGAGAAGAGAAAAAAAATGGTAATGCCTATAGAGATGATGACGAATGCTTGATCCTCCCTGTGAGGTTGTGACGCTTTTCAAAAGGACGATGCATGGCAAT ]
[-] EMBL CB647702 [ AAAAGATATTTGATCGGCGTAGGCGTCTCTTGATTGCAATGGATGTTGCGTTTGGTATGGAGTATTTGCATGAGAAGAACATTGTACACTTTGACCTAAAGAGTGATAATCTGCTTGTCAATCTAAGAGATCCTCAGCACCCTATATGCAAGGTTGGTGATTTGGGCTTGTCGAAAGTTAAATGCCAGACGCTAATATCTGGTGGGGTGCGAGGAACACTTCCTTGGATGGCCCCGGAGCTGTTGAATGGAAGCAGCAGCCTTGTTTTTGAAAAGGTCGATGTTTTCTCCTTCGGAATTGTAATGTGGGAGCTGCTCACTGGTGAAGAGCCTTATGCCGAATTGCATTATGGCGCCATCATAGGCGGGATTGTAAACAACACCCTGCGCCCTCCGGTGCCCGAGTCATGCGACCCTCGGTGGAGGTCACTGATGGAGCAATGCTGGTCGTCGGAACCGTCAGAAAGACCGAGCTTCACGGAGGTTGGCAAGAGGCTACGGGCCATGGCAACCCCCTTTACCAAGGCGCAACCTCAGAAATAAAATTTTTTTTTTTTGCCCCCTCAACCTCCTGTTTTGCGGCCTGTCTCCTGTACAAAATCTTGGAAGGGAGCCATGGCTTGCTCTGTACTAGTCTGTACATGAATAAGGTAAAAAAGAGAAGAG AAAAAAATGGTAATGCCTATAGAGATGATGACGAATGCTTGATCCTCCCTGTGAGGTTGTGACGCTTTTCAAAAGGACGATGCATGGCAATGGT]
consensusID : consensus_8318#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence
[CCATGGCAACCCCCTTTACCAAGGGGCAACCTCAAAAATAAAATTTTTTTTTTTGCCCCCTCAACCTCCTGTTTTGCGGCCTGTTTCCTGTACAAAATTTTGGAAGGGAGCCATGGCTTGCTCTGTACTAGTCTGTACATGAATAAGGTAAAAAAGAGAAGAGAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF315214 [CCATGGCAACCCCCTTTACCAAGGGGCAACCTCAAAAATAAAATTTTTTTTTTTGCCCCCTCAACCTCCTGTTTTGCGGCCTGTTTCCTGTACAAAATTTTGGAAGGGAGCCATGGCTTGCTCTGTACTAGTCTGTACATGAATAAGGTAAAAAAGAGAAGAGAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8318#0 AAGGAGTTCATTTGGGACCTATTGCCCCTCCAGAATCTAGTGTGCAAGGAAAGCCTGCCA 60
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 GTCCACATGGTGCTATTGGTGATGGAAAACTTGAGAAGCCATCGCATGTGAATATTGGTG 120
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 GTGGTTCCATCTACAAGTCTCAAGCTGGAGGTTATCATTTGGGTATTACTAATGCCTTTT 180
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CTGCACCAGCTGAGGACAATCTTGTGAGACATACTGAACAGTCATCTTCAGCTTTTGATT 240
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CACAACATCTTCATTCTGAGATAGGCCACCAGCTAAATGTGTTACAGAATGTGCCTGTCT 300
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CAAACAACCTTGGTGTACCTGCCAAACCACATATTTCTAACGAAAGATTTCTTGCAAGAC 360
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CTGCTAGTGCTGGTGTTCAGGTTCCTGTTGAGCATTCTCCACTGCGACCTGCGGAAATGC 420
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 TGAATCATGTGGTTTCCGCTCCCCCTAATGGCAACAGTCAAATTCCACTGCAGGCGACCG 480
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CTGGTATTGATAGTGTGGAAGCCACACGTGATCCAGCTTACACAGATTCTCTATTCTCAA 540
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 ATCAGGATCCTTGGAATGCAGTGGGAAATGCTTCTGTAGCGCCTCCAAGACTGAATAAGT 600
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 TGGCTAAGGAGCCTGCTGTTTCTGGAGATCCATATGTGGAAGGCCATGGGCTTGCCATCA 660
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 ACAGTTCAAATGCTGCTACACTCTTAGAAGAAGGCAATCTTCCACTCATCCAGGACCGCA 720
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CTTTTAAGGACATCTATCCTGAACCCTCTCAAATGAGCAAAGGATACGGAGAAGAAACTA 780
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 TTAAGCGACAGTTACAAGCTGTTGCTGAGGGTGTGGCAGCATCTGTCCTTCAGTCACCTT 840
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 TCCCTGAAAAACCAACCGTATTCTCTGGTGATCACACAGATAAACAAGGAGCTGTAATTG 900
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 ATCCAAAATTGGAGGATGCGGTGAACAATCAATCAGACAAAACAAGCCAAGGAGTTAAAG 960
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 TTTTAGATGATATTGATAATCTTCAGATAATAAAGAATAGTGATCTAGAAGAATTGCGGG 1020
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 AACTGGGTTCTGGAACCTTTGGTACTGTTTACCATGGAAAATGGAGAGGTTCCGATGTTG 1080
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CTATAAAAAGGATCAATGATCGATGCTTTGCTGGGAAGGCATCTGAGCAAGAGCGGATGA 1140
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 GAACTGATTTCTGGAATGAAGCTGACAAGCTTGCATCATTGCACCATCCGAATGTTGTAG 1200
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CTTTCTATGGTGTTGTACTGGATGGACCAGGTGGATCTGTTGCAACAGTAACTGAATACA 1260
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 TGGCTAATGGTTCTCTTCGACAAGCATTGCAAAGACATGAAAAGATATTTGATCGGCGTA 1320
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 GGCGTCTCCTGATTGCAATGGATGTTGCGTTTGGTATGGAGTATTTGCATGAGAAGAACA 1380
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 TTGTACACTTTGACCTAAAGAGTGATAATCTGCTTGTCAATCTAAGAGATCCTCAGCACC 1440
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CTATATGCAAGGTTGGTGATTTGGGCTTGTCGAAAGTTAAATGCCAGACGCTAATATCTG 1500
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 GTGGGGTGCGAGGAACACTTCCTTGGATGGCCCCGGAGCTGTTGAATGGAAGCAGCAGCC 1560
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 TTGTTTCTGAAAAGGTCGATGTTTTCTCCTTCGGAATTGTAATGTGGGAGCTGCTCACTG 1620
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 GTGAAGAGCCTTATGCCGAATTGCATTATGGCGCCATCATAGGCGGGATTGTAAACAACA 1680
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CCCTGCGCCCTCCGGTGCCCGAGTCATGCGACCCTCGGTGGAGGTCACTGATGGAGCAAT 1740
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 GCTGGTCGTCGGAACCGTCAGAAAGACCGAGCTTCACGGAGGTTGGCAAGAGGCTACGGG 1800
consensus_8318#1 ------------------------------------------------------------
consensus_8318#0 CCATGGCAACCCCCTCTACCAAGGCGCAACCTCAGAAATAAAATTTTTTTTTTTGCCCCC 1860
consensus_8318#1 CCATGGCAACCCCCTTTACCAAGGGGCAACCTCAAAAATAAAATTTTTTTTTTTGCCCCC 60
*************** ******** ********* *************************
consensus_8318#0 TCAACCTCCTGTTCTGCGGCCTGTCTCCTGTACAAAATCTTGGAAGGGAGCCATGGCTTG 1920
consensus_8318#1 TCAACCTCCTGTTTTGCGGCCTGTTTCCTGTACAAAATTTTGGAAGGGAGCCATGGCTTG 120
************* ********** ************* *********************
consensus_8318#0 CTCTGTACTAGTCTGTACATGAATAAGGTAAAAAAGAGAAGAGAAAAAAAATGGTAATGC 1980
consensus_8318#1 CTCTGTACTAGTCTGTACATGAATAAGGTAAAAAAGAGAAGAGAAAAAAAAAAAAAAAAA 180
*************************************************** **
consensus_8318#0 CTATAGAGATGATGACGAATGCTTGATCCTCCCTGTGAGGTTGTGACGCTTTTCAAAAGG 2040
consensus_8318#1 AAAAAA------------------------------------------------------ 186
* *
consensus_8318#0 ACGATGCATGGCAATGGT 2058
consensus_8318#1 ------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||