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Oryza sativa
cluster # 8321 cluster # 8321       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8321#0 length = 1060 sequences # 5  

consensusID : consensus_8321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1060
fasta sequence
                              [TTAACCAATTTTATTGGAACTCTTGTCAAAGGCAAATATGTATCCTTGGCTGCAAAGAATTGGAGAAAGGTACCTGAAGCAAGCAAGACGAAAGTTTGGACATCTGTTCAGGGAATTTTTGACATTGAGGATCATTACAAACCTTGGATTTTGAAATCAGCTAGCAAAAAGTGGAAAGATTTTAAAGCTGTCTTGAAGAGAATGTACTTCAATTCTGAGTTATCATGGAGACAAAATGTACTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGGAAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTCAATGGAACTCACACCACTGGTTCACGAGGTTTTGCAGTTGTTCTTGATCAAACGGAGCTTAAAGAGAACAGAAAAGTTGGACGGGCTGAACTCTATGTAATTACTCATACCAAAAGAAATGGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAATAGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAATTGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAGCCGTCTAGTAAAGTGACATCACTTCCTCAGCAAAAACAGAAGTTTAGATCTCCTCATCTAGAATTGCATAAACAGTCAGAGCCTTTTGGTCAAGTGACAT]

[+] EMBL CF196236             [TTAACCAATTTTATTGGAACTCTTGTCAAAGGCAAATATGTATCCTTGGCTGCAAAGAATTGGAGAAAGGTACCTGAAGCAAGCAAGACGAAAGTTTGGACATCTGTTCAGGGAATTTTTGACATTGAGGATCATTACAAACCTTGGATTTTGAAATCAGCTAGCAAAAAGTGGAAAGATTTTAAAGCTGTCTTGAAGAGAATGTACTTCAATTCTGAGTTATCATGGAGACAAAATGTACTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGGAAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTCAATGGAACTCACACCACTGGTTCACGNNNTTTTGCAGTTGTTCTTGATCAAACGGAGCTTAANNNNNACANNNNNGTTGGACGGGCTNNNNNCTATGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB647790             [                                                               AGAAAGGTACCTGAAGCAAGCAAGACGAAAGTTTGGACATCTGTTCAGGGAATTTTTGACATTGAGGATCATTACAAACCTTGGATTTTGAAATCAGCTAGCAAAAAGTGGAAAGATTTTAAAGCTGTCTTGAAGAGAATGTACTTCAATTCTGAGTTATCATGGAGACAAAATGTACTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGGAAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTCAATGGAACTCACACCACTGGTTCACGAGGTTTTGCAGTTGTTCTTGATCAAACGGAGCTTAAAGAGAACAGAAAAGTTGGACGGGCTGAACTCTATGTAATTACTCATACCAAAAGAAATGGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTACAAAGTATGTTGCTAGCTTCCCAGGG                                                                                                                                                                                                                                            ]
[+] EMBL CB665120             [                                                                                                                                                                                                                       TGAGTCATCATGGAGACAAAATGTACTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGGAAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTCAATGGAACTCACACCACTGGTTCACGAGGTTTTGCAGTTGTTCTTGATCAAACGGAGCTTAAAGAGAACAGAAAAGTTGGACGGGCTGAACTCTATGTAATTACTCATACCAAAAGAAATGGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAATAGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAATTGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAGCCGTCTAGTAAAGTGACATCACTTCCTCAGCAANAACAGAAGTTTAGATCTCCTCATCTAGAATTGC                                 ]
[+] EMBL CB650581             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATGTAATCTCTCATACCAAAAGAAATGGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAATAGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAATTGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAGCCGTCTAGTAAAGTGACATCACTTCCTCAGCAAAAACAGAAGTTTAGATCTCCTCATCTAGAATTGCATAAACAGTCAGAGCCTTTTGGTCAAGTGACAT]
[+] EMBL CB678197             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAACCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAGGAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCACCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGATATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAAAAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAATAGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAATTGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAGCCGTCTAGTAAAGTGACATCACTTCCTCAGCAAAAACAGAAGTTTAGATCTCCTCATCTAGAATTGCATAAACAGTCAGAGCCTTTTGGTCAAGTGACAT]


>consensus_8321#0 TTAACCAATTTTATTGGAACTCTTGTCAAAGGCAAATATGTATCCTTGGCTGCAAAGAAT TGGAGAAAGGTACCTGAAGCAAGCAAGACGAAAGTTTGGACATCTGTTCAGGGAATTTTT GACATTGAGGATCATTACAAACCTTGGATTTTGAAATCAGCTAGCAAAAAGTGGAAAGAT TTTAAAGCTGTCTTGAAGAGAATGTACTTCAATTCTGAGTTATCATGGAGACAAAATGTA CTTAATGGCTGCCAAGAAAGAATCCCTATAAAACAATGGGCATGGTTGGTGAGGTATTGG AAGACTGAAGCAGCTCGGATCAAGTCAGAGAGGAATAAAGCTACTAGATCCTTGCAACTC AATGGAACTCACACCACTGGTTCACGAGGTTTTGCAGTTGTTCTTGATCAAACGGAGCTT AAAGAGAACAGAAAAGTTGGACGGGCTGAACTCTATGTAATTACTCATACCAAAAGAAAT GGAGAACCCTTGGATGAATACTGTAGTGATAAAATTGATTAAAAGAAGGATCGAGGAAAA CCCTGCTCATATCGGTGAAGAGGCACGAGATGATGATCTATATTCAGAAATGTTTCCAAG GAAGAAAACTAGAAAGAACAGTGGCATGGGCCTGCTAGCAGGTGGAGTGGCTTCAAGGCA CCTAGCTGAAGCTATCGCACAACTAGAAGAAACTAAACAGGAGAACAAGGAGCTTTGGAT ATGGTGGACACATTAGCAGCAAATCAGACCTTGATGATGGCACGGAATGAAAGGCTGGAA AAACAATATGAGGAATTAAAAAGTATGTTGCTAGCTTCCCAAGGGCATGCACCTATGAAT AGAAGTCAGGTGTCTAATTCACCAGCTAAAAATCAGTTGGAGGAACTGGATCCTATGAAT TGCATCAATCAAGCACCATCACTTTCATCCAGAAACAAGAAAACACTTCTACAGTCACAG CCGTCTAGTAAAGTGACATCACTTCCTCAGCAAAAACAGAAGTTTAGATCTCCTCATCTA GAATTGCATAAACAGTCAGAGCCTTTTGGTCAAGTGACAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)