| These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs : 
 consensusID : consensus_8324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence 
                              [AGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTNCNGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTNCACGATCTTCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCAAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTTACCTCTTCTCTTGTTGAACTGGTTGGTGGTGGCTCCCTTCTGGTGTTTGGTATTTATTGGAGAGTCAATCAAGATTAGTTTAGGAATCGGTGACAATCAAGATTGTCAGAGTCGGATTGTTTAGGGTGTTTTTATTTTGGAATCTACTGTCTTAGGCCGTGTTTNGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OS0011A              [AGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTNCNGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTNCACGATCTTCGGTTAATTGAGGAGCACAGGGCGGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C97853               [                                                              caATATTCCCTTCCCAATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTNCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTNTTGGTGAGGTNCCGCCGC GCTGCCGCCAGATCCGGCGGATNTAGGGTCGTCCATCGCCGTCCCGAGCGCCGTGGTGGNTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTCCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCAAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTTACCTCTTCTCTTGTTGAACTGGTTGGTGGTGGCTCCCTTCTGGTGTTTGGTATTTATTGGAGAGTCAATCAAGATTAGTTTAGGAATCGGTGACAATCAAGATTGTCAGAGTCGGATTGTTTAGGGTGTTTTTATTTTGGAATCTACTGTCTTAGGCCGTGTTTNGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence 
                              [GGAATACCTTGCGGCGTAGATCCAGCGGGCGGCGAGCTTCGCTGGTGGATAGCTTTTGTGCTGATTGCTCGAGGTCGGCGAGCGCTGGTCATCTTGACAGTGGCGAGACGGCTCGGAGAAGGGAAAGGTGGAGGCAGTGCGGTGGTTGGGTCACGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGGAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGATCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATAGTGTGTAGGGTCTTTTAATAAAGGAATCATACTGACTT]
[+] EMBL CB965641             [GGAATACCTTGCGGCGTAGATCCAGCGGGCGGCGAGCTTCGCTGGTGGATAGCTTTTGTGCTGATTGCTCGAGGTCGGCGAGCGCTGGTCATCTTGACAGTGGCGAGACGGCTCGGAGAAGGGAAAGGTGGAGGCAGTGCGGTGGTTGGGTCACGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGGAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGATCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATAGTGTGTAGGGTCTTTTAATAAAGGAATCATACTGACTT]
consensusID : consensus_8324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence 
                              [TGCCAAATCTGATGAGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTCCCGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTCCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCNAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATNTACCTCTTCTCTTGTTGAAAAAAAANACCAAAAAGAGAAAAAAGAGAAAAAAAGACAAAATAAAATAACCTCGAGGGG]
[+] EMBL CA755254             [TGCCAAATCTGATGAGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTCCCGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTCCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCNAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATNTACCTCTTCTCTTGTTGAAAAAAAANACCAAAAAGAGAAAAAAGAGAAAAAAAGACAAAATAAAATAACCTCGAGGGG]
consensusID : consensus_8324#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence 
                              [AGACAAGGGGGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGTAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCATTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGCTCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATTGTGTGTAGGGTCTTTTTGTTTTGGAATCTACTGCCTTATTGCTATTGTTGTCATATGTTAATTGGTGTCATATTACTATTGCACATGTGTCCGATCAGATCAGCACAAAGTTTTGGCTATAGGATACTCTGGAAAAGCTATTGCAAAAAAAAAAAAAAA]
[-] EMBL CA761376             [AGACAAGGGGGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGTAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCATTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGCTCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATTGTGTGTAGGGTCTTTTTGTTTTGGAATCTACTGCCTTATTGCTATTGTTGTCATATGTTAATTGGTGTCATATTACTATTGCACATGTGTCCGATCAGATCAGCACAAAGTTTTGGCTATAGGATACTCTGGAAAAGCTATTGCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8324#1      ----------------GGAATACCTTGCGGCGTAGATCCAGCGGGCGGCGAGCTTCGCTG 44
consensus_8324#3      ------------------------------------------------------------
consensus_8324#0      --------------AGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCT 46
consensus_8324#2      TGCCAAATCTGATGAGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCT 60
                                                                                  
consensus_8324#1      GTGGATAGCTTTTGTGCTGATTGCTCGAGGTCGGCGA-GCGCTGGTCATCTTGACAGT-G 102
consensus_8324#3      ------------------------------------------------------------
consensus_8324#0      CTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCG 106
consensus_8324#2      CTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCG 120
                                                                                  
consensus_8324#1      GCGAGACGGCTCGGAGAAGGGAAAGGTGGAGGCAGTGCGGTGGTTGG---GTCACGGATC 159
consensus_8324#3      ----------------------------------------AGACAAG---G--GGGGATC 15
consensus_8324#0      GTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCC 166
consensus_8324#2      GTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCC 180
                                                                    *   *    *   *
consensus_8324#1      GGCTAGGGTGGCG--AGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAA 217
consensus_8324#3      GGCTAGGGTGGCG--AGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAA 73
consensus_8324#0      GCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTNCNGAGCGCCGT 226
consensus_8324#2      GCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTCCCGAGCGCCGT 240
                      * *  ** ** **  **    ** * ***    * *   **  *  *         **  
consensus_8324#1      AAAA------ACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTT 271
consensus_8324#3      AAAA------ACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTT 127
consensus_8324#0      GGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTNCACGATCTT 286
consensus_8324#2      GGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTC 300
                                **** *** * **      **         * * ***  *     * ** 
consensus_8324#1      GGAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAA-GGCTAAATCT 330
consensus_8324#3      GTAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAA-GGCTAAATCT 186
consensus_8324#0      ----CGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCAAAATCT 342
consensus_8324#2      ----CGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCNAAATCT 356
                          * * ** **     ***    *    **         * *** *  *** ******
consensus_8324#1      GATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 390
consensus_8324#3      GATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 246
consensus_8324#0      GATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 402
consensus_8324#2      GATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 416
                      **************** ****** ************************************
consensus_8324#1      TATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCGTTGATT 450
consensus_8324#3      TATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCATTGATT 306
consensus_8324#0      TATATTTTGCTGCTGTGTTTGCCGATAGT----------------TCGGTTGCATTGCTT 446
consensus_8324#2      TATATTTTGCTGCTGTGTTTGCCGATAGT----------------TCGGTTGCATTGCTT 460
                      ********** ****** ***********                  ****** *** **
consensus_8324#1      GCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGATCCCTTCTGGT-GC-TTGATATT 508
consensus_8324#3      GCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGCTCCCTTCTGGT-GC-TTGATATT 364
consensus_8324#0      GCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGC 506
consensus_8324#2      GCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGC 520
                      ******** ********************* ***** **** ****** ** *****   
consensus_8324#1      TATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATAGTGT 568
consensus_8324#3      TATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATTGTGT 424
consensus_8324#0      TATTTACCTCTTCTCTTGTTGAACTGGTTGGTGGTGGCTCCCTTCTGGTGTTTGGTATTT 566
consensus_8324#2      TATNTACCTCTTCTCTTGTTGAA---------AAAAAANACCAAAAAGAGAA-AAAAGAG 570
                      ***     **        **                                        
consensus_8324#1      GTAGGGTCTTTTAATAAAGGAATCATACTGACTT-------------------------- 602
consensus_8324#3      GTAGGGTCTTTTTGTTTTGGAATC-TACTGCCTTATTGCTATTGTTGTCATATGTTAATT 483
consensus_8324#0      ATTGGAGAGTCAATCAAGATTAGTTTAGGAATCGGTGACAATCAAGATTGTCAGAGTCGG 626
consensus_8324#2      AAAAAAAGACAAAATAAAATAACCTCGAGGGG---------------------------- 602
                                           *                                      
consensus_8324#1      ------------------------------------------------------------
consensus_8324#3      GGTGTCATATTACTATTGCACATGTGTCCGATCAGATCAGCACAAAGTTTTGGCTATAGG 543
consensus_8324#0      ATTGTTTAGGGTGTTTTTATTTTGGAATCTACTGTCTTAGGCCGTGTTTNGATCCAAAGT 686
consensus_8324#2      ------------------------------------------------------------
                                                                                  
consensus_8324#1      ------------------------------------------------------------
consensus_8324#3      ATACTCTGGAAAAGCTATTGCAAAAAAAAAAAAAAA------------------------ 579
consensus_8324#0      TTGGATCCAAACTTCAGTCCTTTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 746
consensus_8324#2      ------------------------------------------------------------
                                                                                  
consensus_8324#1      ----
consensus_8324#3      ----
consensus_8324#0      AAAA 750
consensus_8324#2      ----
                          
 | 
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||