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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1993 fasta sequence
[CTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCTATGGAGGCGTACAGGCAGCAGCTGGAGGCGTACCAGATGGGGAGCCAGCATAGCGCCGCGGCGGCGGCGGCGGCGAGGGCGCCGCTGGTGCTCGAGGAGTTCATACCGGTGAAGAACATCGGGATCGACGTCGTGGCGGCGGATAAGGCGGCGGCGGCGGGGGGCAACAGCGTGTCGTCGGAGAAGGCGAGCTGGATGGTGTCGGCGCAGCTGTGGAACGCGCCGGCGTCGGCGTCGGCGGCGGACACGGCGGCGAAGGGGCCCCAGACGCCCAAGGAGCACTCGGAGCACCACCCGCTCGACACGAGCCCCAAGCTGATCACCGCCGCCGCGCTGCCGGAGCTCGCGCTCGCGCCCGCGGAGAAGGCGGCGGACGCGATCACCATCGCCGCCGGCGAGGTCGACAAGAAGCCGTACGCCCACGACAACGGCGTCGTGGCGAGATCGAGAGAAGCCCAGAACGGCGGGAAGCCGCCGTCGACGCCATCGGACGGGCAGGCCGTCCCGCCGCCGCCACAGCCCCACCGGAAGGCGCGCCGTTGCTGGTCGCCGGAGCTGCACCGCCGCTTCGTCAATGCTCTTCAGATCCTCGGCGGCGCCCAAGTGGCGACCCCGAAGCAGATTCGCGAGCTGATGAAGGTTGATGGATTGACCAATGATGAGGTGAAAAGCCATCTCCAGAAGTACAGGTTGCACACAAGACGGCCGATGCCGTCGCCGGCGCCGCCGACGGCAGCGACGCCGCAGCTGGTGGTGCTGGGAGGCATCTGGGTGCCGCCGGAGTACGCGACGCAGGCGGCGGGGCCGGCCATCTACGGCGCGCACCCGGCGACGCAGCCGCACTACACGGCGGCGGTGGCGGCGCAGGAGTACTACCACCACCACCACCACCACCTGCAGCACCACCCCGCCGCCGCCGCCCTGGTGCACCACCGCGCCGTAGCCCCGCCCCCGCCGCTGCCGCCTCAGCAGCAGCTGGCCCCTCCCTACAGCGCCAAGTCGTCGGCGTCGGCGAGGCTCGGGTCCCCGGACTCCGACGGCCGTGGCAGCGGCGGCGGCGGCGGCGCCGCCGCCTCCGGAGCCGGAAGGGACATGTCCGAGAGCATCGAGGAGGAAGGCGAGGGCGAGGAGCGGGAGGACGACGACGACGACGACGAGATGGCGGCGACCAACAACGCCCACGCCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAAAAAGGGAAAAGTGATTTTTTGTTGGCGCGCGCGCGCGGAGAACGGGAGCCGAGCCGAGCCGAGCCGACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATGGAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTTTTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAATCCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCTAGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAGCCACCAATAATGCATAATGCAGGGTTTGCTTCTGCAATTAATGTGATTATATGTGAATGGTTCTAATTAAAAAAAAAA]
[+] EMBL AK109808 [CTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCTATGGAGGCGTACAGGCAGCAGCTGGAGGCGTACCAGATGGGGAGCCAGCATAGCGCCGCGGCGGCGGCGGCGGCGAGGGCGCCGCTGGTGCTCGAGGAGTTCATACCGGTGAAGAACATCGGGATCGACGTCGTGGCGGCGGATAAGGCGGCGGCGGCGGGGGGCAACAGCGTGTCGTCGGAGAAGGCGAGCTGGATGGTGTCGGCGCAGCTGTGGAACGCGCCGGCGTCGGCGTCGGCGGCGGACACGGCGGCGAAGGGGCCCCAGACGCCCAAGGAGCACTCGGAGCACCACCCGCTCGACACGAGCCCCAAGCTGATCACCGCCGCCGCGCTGCCGGAGCTCGCGCTCGCGCCCGCGGAGAAGGCGGCGGACGCGATCACCATCGCCGCCGGCGAGGTCGACAAGAAGCCGTACGCCCACGACAACGGCGTCGTGGCGAGATCGAGAGAAGCCCAGAACGGCGGGAAGCCGCCGTCGACGCCATCGGACGGGCAGGCCGTCCCGCCGCCGCCACAGCCCCACCGGAAGGCGCGCCGTTGCTGGTCGCCGGAGCTGCACCGCCGCTTCGTCAATGCTCTTCAGATCCTCGGCGGCGCCCAAGTGGCGACCCCGAAGCAGATTCGCGAGCTGATGAAGGTTGATGGATTGACCAATGATGAGGTGAAAAGCCATCTCCAGAAGTACAGGTTGCACACAAGACGGCCGATGCCGTCGCCGGCGCCGCCGACGGCAGCGACGCCGCAGCTGGTGGTGCTGGGAGGCATCTGGGTGCCGCCGGAGTACGCGACGCAGGCGGCGGGGCCGGCCATCTACGGCGCGCACCCGGCGACGCAGCCGCACTACACGGCGGCGGTGGCGGCGCAGGAGTACTACCACCACCACCACCACCACCTGCAGCACCACCCCGCCGCCGCCGCCCTGGTGCACCACCGCGCCGTAGCCCCGCCCCCGCCGCTGCCGCCTCAGCAGCAGCTGGCCCCTCCCTACAGCGCCAAGTCGTCGGCGTCGGCGAGGCTCGGGTCCCCGGACTCCGACGGCCGTGGCAGCGGCGGCGGCGGCGGCGCCGCCGCCTCCGGAGCCGGAAGGGACATGTCCGAGAGCATCGAGGAGGAAGGCGAGGGCGAGGAGCGGGAGGACGACGACGACGACGACGAGATGGCGGCGACCAACAACGCCCACGCCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAAAAAGGGAAAAGTGATTTTTTGTTGGCGCGCGCGCGCGGAGAACGGGAGCCGAGCCGAGCCGAGCCGACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATGGAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTTTTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAATCCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCTAGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAGCCACCAATAATGC ]
[-] EMBL CF309596 [ ACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAAAAAGGGAAAAGTGATTTTTTGTTGGCGCGCGCGCGCGGAGAACGGGAGCCGAGCCGAGCCGAGCCGACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATGGAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTTTTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAATCCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCTAGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAGCCACCAATAATGCATAATGCAGGGTTTGCTTCTGCAATTAATGTGATTATATGTGAATGGTTCTAATTAAAAAAAAAA]
[-] EMBL CF308438 [ ACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATGGAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTTTTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAATCCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCTAGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAGCCACCAATAATGCATAATGCAGGGTTTGCTTCTGCAATTAATGTGATTATATGTGAATGGTTCTAATTAAAAAAAAAA]
consensusID : consensus_8326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence
[CCTTCTACATTCGATCTCGATCACTCACACTTACACTCGCAGTTTGCACAGCTACTTCATCTCAAGTAGTAGTAGTAATATACTAGCTAGATCGGTCGGCTATTTGCTGTAGCTAGCTAGCGTGAGCTAGCTTGGTTTGTAGAGCTTGTATACTTGGAGGGAGGAGATCGATAGCCATGGCTTCTTCGTCTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCCTAT-GGAGTCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAA]
[+] EMBL CF309595 [CCTTCTACATTCGATCTCGATCACTCACACTTACACTCGCAGTTTGCACAGCTACTTCATCTCAAGTAGTAGTAGTAATATACTAGCTAGATCGGTCGGCTATTTGCTGTAGCTAGCTAGCGTGAGCTAGCTTGGTTTGTAGAGCTTGTATACTTGGAGGGAGGAGATCGATAGCCATGGCTTCTTCGTCTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCCTAT GGAGTCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAA]
[+] EMBL CF308437 [CCTTCTACATTCGATCTCGATCACTCACACTTACACTCGCAGTTTGCACAGCTACTTCATCTCAAGTAGTAGTAGTAATATACTAGCTAGATCGGTCGGCTATTTGCTGTAGCTAGCTAGCGTGAGCTAGCTTGGTTTGTAGAGCTTGTATACTTGGAGGGAGGAGATCGATAGCCATGGCTTCTTCGTCTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATG CTATGGGAGTCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8326#0 CTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGC 60
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 AGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCG 120
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 ACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCTATGGAGGCGT 180
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 ACAGGCAGCAGCTGGAGGCGTACCAGATGGGGAGCCAGCATAGCGCCGCGGCGGCGGCGG 240
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CGGCGAGGGCGCCGCTGGTGCTCGAGGAGTTCATACCGGTGAAGAACATCGGGATCGACG 300
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 TCGTGGCGGCGGATAAGGCGGCGGCGGCGGGGGGCAACAGCGTGTCGTCGGAGAAGGCGA 360
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 GCTGGATGGTGTCGGCGCAGCTGTGGAACGCGCCGGCGTCGGCGTCGGCGGCGGACACGG 420
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CGGCGAAGGGGCCCCAGACGCCCAAGGAGCACTCGGAGCACCACCCGCTCGACACGAGCC 480
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CCAAGCTGATCACCGCCGCCGCGCTGCCGGAGCTCGCGCTCGCGCCCGCGGAGAAGGCGG 540
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CGGACGCGATCACCATCGCCGCCGGCGAGGTCGACAAGAAGCCGTACGCCCACGACAACG 600
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 GCGTCGTGGCGAGATCGAGAGAAGCCCAGAACGGCGGGAAGCCGCCGTCGACGCCATCGG 660
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 ACGGGCAGGCCGTCCCGCCGCCGCCACAGCCCCACCGGAAGGCGCGCCGTTGCTGGTCGC 720
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CGGAGCTGCACCGCCGCTTCGTCAATGCTCTTCAGATCCTCGGCGGCGCCCAAGTGGCGA 780
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CCCCGAAGCAGATTCGCGAGCTGATGAAGGTTGATGGATTGACCAATGATGAGGTGAAAA 840
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 GCCATCTCCAGAAGTACAGGTTGCACACAAGACGGCCGATGCCGTCGCCGGCGCCGCCGA 900
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CGGCAGCGACGCCGCAGCTGGTGGTGCTGGGAGGCATCTGGGTGCCGCCGGAGTACGCGA 960
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CGCAGGCGGCGGGGCCGGCCATCTACGGCGCGCACCCGGCGACGCAGCCGCACTACACGG 1020
consensus_8326#1 ------------------CCTTCTACA-TTCGATCTCGATCACTCACACTTAC-ACTCGC 40
** ***** ** * ** ** ** * ** ** **
consensus_8326#0 CGGCGGTGGCGGCGCAGGAGTACTACCACCACCACCACCACCACCTGCAGCACCACCCCG 1080
consensus_8326#1 AGTTTGCACAGCTACTTCATCTCAAGTAGTAGTAGTAATAT-ACTAGCTAGATCGGTCGG 99
* * * * * * * * * * * * ** ** * * * *
consensus_8326#0 CCGCCGCCGCCCTGGTGCACCACCGCGCCGTAGCCCCGCCCCCGCCGCTGCCGC-CTCAG 1139
consensus_8326#1 CTATT--TGCTGTAGCTAGCTAGCGTGAGCTAGCTTGGTTTGTAGAGCTTGTATACTTGG 157
* ** * * * * ** * **** * *** ** *
consensus_8326#0 CAGCAGCTGGCCCCTCCCTACAGCGCCAAGTCGTCGGCGTCGGCGAGGCTCGGGTCCCCG 1199
consensus_8326#1 AGGGAGGAGATCGATAGCCATGGCTTC--TTCGTC--TTCTGACCTAACCCTAGACGACC 213
* ** * * * * * ** * ***** * * * * * * *
consensus_8326#0 GACTCCGACGGCCGTGGCAGCGGCGGCGGCGGCGGCGCCGCCGCCTCCGGAGCCGGAAGG 1259
consensus_8326#1 ACCACCATCTGACG--GCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGA 271
* ** * * ** ** * *** ****** *** ** * ** * * * *** * *
consensus_8326#0 GA-CATGTCCGAGAGCATCGAGGAGGAAGGCGAGGGCGAGGAGCGGGAGGACGACGACGA 1318
consensus_8326#1 GTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCC 331
* * **** * ** *** * ** *** * ** ** *
consensus_8326#0 CGACGACGAGATGGCGGCGACCAACAACGCCCACG---CCGTCGACGGCGACGACGACAA 1375
consensus_8326#1 TCTCTGC---ATGCAGCTTCTCAATCATGCCTATGGAGTCGTCGACGGCGACGACGACAA 388
* * *** * *** * *** * * *********************
consensus_8326#0 CGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAA 1435
consensus_8326#1 CGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAA 448
************************************************************
consensus_8326#0 CCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTA 1495
consensus_8326#1 CCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTA 508
************************************************************
consensus_8326#0 GCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAAAAAGG 1555
consensus_8326#1 GCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAA----- 563
*******************************************************
consensus_8326#0 GAAAAGTGATTTTTTGTTGGCGCGCGCGCGCGGAGAACGGGAGCCGAGCCGAGCCGAGCC 1615
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 GACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATG 1675
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 GAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTT 1735
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 TTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAAT 1795
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCT 1855
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 AGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAG 1915
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 CCACCAATAATGCATAATGCAGGGTTTGCTTCTGCAATTAATGTGATTATATGTGAATGG 1975
consensus_8326#1 ------------------------------------------------------------
consensus_8326#0 TTCTAATTAAAAAAAAAA 1993
consensus_8326#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||