These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1993 fasta sequence [CTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCTATGGAGGCGTACAGGCAGCAGCTGGAGGCGTACCAGATGGGGAGCCAGCATAGCGCCGCGGCGGCGGCGGCGGCGAGGGCGCCGCTGGTGCTCGAGGAGTTCATACCGGTGAAGAACATCGGGATCGACGTCGTGGCGGCGGATAAGGCGGCGGCGGCGGGGGGCAACAGCGTGTCGTCGGAGAAGGCGAGCTGGATGGTGTCGGCGCAGCTGTGGAACGCGCCGGCGTCGGCGTCGGCGGCGGACACGGCGGCGAAGGGGCCCCAGACGCCCAAGGAGCACTCGGAGCACCACCCGCTCGACACGAGCCCCAAGCTGATCACCGCCGCCGCGCTGCCGGAGCTCGCGCTCGCGCCCGCGGAGAAGGCGGCGGACGCGATCACCATCGCCGCCGGCGAGGTCGACAAGAAGCCGTACGCCCACGACAACGGCGTCGTGGCGAGATCGAGAGAAGCCCAGAACGGCGGGAAGCCGCCGTCGACGCCATCGGACGGGCAGGCCGTCCCGCCGCCGCCACAGCCCCACCGGAAGGCGCGCCGTTGCTGGTCGCCGGAGCTGCACCGCCGCTTCGTCAATGCTCTTCAGATCCTCGGCGGCGCCCAAGTGGCGACCCCGAAGCAGATTCGCGAGCTGATGAAGGTTGATGGATTGACCAATGATGAGGTGAAAAGCCATCTCCAGAAGTACAGGTTGCACACAAGACGGCCGATGCCGTCGCCGGCGCCGCCGACGGCAGCGACGCCGCAGCTGGTGGTGCTGGGAGGCATCTGGGTGCCGCCGGAGTACGCGACGCAGGCGGCGGGGCCGGCCATCTACGGCGCGCACCCGGCGACGCAGCCGCACTACACGGCGGCGGTGGCGGCGCAGGAGTACTACCACCACCACCACCACCACCTGCAGCACCACCCCGCCGCCGCCGCCCTGGTGCACCACCGCGCCGTAGCCCCGCCCCCGCCGCTGCCGCCTCAGCAGCAGCTGGCCCCTCCCTACAGCGCCAAGTCGTCGGCGTCGGCGAGGCTCGGGTCCCCGGACTCCGACGGCCGTGGCAGCGGCGGCGGCGGCGGCGCCGCCGCCTCCGGAGCCGGAAGGGACATGTCCGAGAGCATCGAGGAGGAAGGCGAGGGCGAGGAGCGGGAGGACGACGACGACGACGACGAGATGGCGGCGACCAACAACGCCCACGCCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAAAAAGGGAAAAGTGATTTTTTGTTGGCGCGCGCGCGCGGAGAACGGGAGCCGAGCCGAGCCGAGCCGACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATGGAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTTTTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAATCCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCTAGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAGCCACCAATAATGCATAATGCAGGGTTTGCTTCTGCAATTAATGTGATTATATGTGAATGGTTCTAATTAAAAAAAAAA] [+] EMBL AK109808 [CTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCTATGGAGGCGTACAGGCAGCAGCTGGAGGCGTACCAGATGGGGAGCCAGCATAGCGCCGCGGCGGCGGCGGCGGCGAGGGCGCCGCTGGTGCTCGAGGAGTTCATACCGGTGAAGAACATCGGGATCGACGTCGTGGCGGCGGATAAGGCGGCGGCGGCGGGGGGCAACAGCGTGTCGTCGGAGAAGGCGAGCTGGATGGTGTCGGCGCAGCTGTGGAACGCGCCGGCGTCGGCGTCGGCGGCGGACACGGCGGCGAAGGGGCCCCAGACGCCCAAGGAGCACTCGGAGCACCACCCGCTCGACACGAGCCCCAAGCTGATCACCGCCGCCGCGCTGCCGGAGCTCGCGCTCGCGCCCGCGGAGAAGGCGGCGGACGCGATCACCATCGCCGCCGGCGAGGTCGACAAGAAGCCGTACGCCCACGACAACGGCGTCGTGGCGAGATCGAGAGAAGCCCAGAACGGCGGGAAGCCGCCGTCGACGCCATCGGACGGGCAGGCCGTCCCGCCGCCGCCACAGCCCCACCGGAAGGCGCGCCGTTGCTGGTCGCCGGAGCTGCACCGCCGCTTCGTCAATGCTCTTCAGATCCTCGGCGGCGCCCAAGTGGCGACCCCGAAGCAGATTCGCGAGCTGATGAAGGTTGATGGATTGACCAATGATGAGGTGAAAAGCCATCTCCAGAAGTACAGGTTGCACACAAGACGGCCGATGCCGTCGCCGGCGCCGCCGACGGCAGCGACGCCGCAGCTGGTGGTGCTGGGAGGCATCTGGGTGCCGCCGGAGTACGCGACGCAGGCGGCGGGGCCGGCCATCTACGGCGCGCACCCGGCGACGCAGCCGCACTACACGGCGGCGGTGGCGGCGCAGGAGTACTACCACCACCACCACCACCACCTGCAGCACCACCCCGCCGCCGCCGCCCTGGTGCACCACCGCGCCGTAGCCCCGCCCCCGCCGCTGCCGCCTCAGCAGCAGCTGGCCCCTCCCTACAGCGCCAAGTCGTCGGCGTCGGCGAGGCTCGGGTCCCCGGACTCCGACGGCCGTGGCAGCGGCGGCGGCGGCGGCGCCGCCGCCTCCGGAGCCGGAAGGGACATGTCCGAGAGCATCGAGGAGGAAGGCGAGGGCGAGGAGCGGGAGGACGACGACGACGACGACGAGATGGCGGCGACCAACAACGCCCACGCCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAAAAAGGGAAAAGTGATTTTTTGTTGGCGCGCGCGCGCGGAGAACGGGAGCCGAGCCGAGCCGAGCCGACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATGGAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTTTTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAATCCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCTAGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAGCCACCAATAATGC ] [-] EMBL CF309596 [ ACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAAAAAGGGAAAAGTGATTTTTTGTTGGCGCGCGCGCGCGGAGAACGGGAGCCGAGCCGAGCCGAGCCGACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATGGAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTTTTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAATCCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCTAGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAGCCACCAATAATGCATAATGCAGGGTTTGCTTCTGCAATTAATGTGATTATATGTGAATGGTTCTAATTAAAAAAAAAA] [-] EMBL CF308438 [ ACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATGGAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTTTTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAATCCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCTAGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAGCCACCAATAATGCATAATGCAGGGTTTGCTTCTGCAATTAATGTGATTATATGTGAATGGTTCTAATTAAAAAAAAAA] consensusID : consensus_8326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence [CCTTCTACATTCGATCTCGATCACTCACACTTACACTCGCAGTTTGCACAGCTACTTCATCTCAAGTAGTAGTAGTAATATACTAGCTAGATCGGTCGGCTATTTGCTGTAGCTAGCTAGCGTGAGCTAGCTTGGTTTGTAGAGCTTGTATACTTGGAGGGAGGAGATCGATAGCCATGGCTTCTTCGTCTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCCTAT-GGAGTCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAA] [+] EMBL CF309595 [CCTTCTACATTCGATCTCGATCACTCACACTTACACTCGCAGTTTGCACAGCTACTTCATCTCAAGTAGTAGTAGTAATATACTAGCTAGATCGGTCGGCTATTTGCTGTAGCTAGCTAGCGTGAGCTAGCTTGGTTTGTAGAGCTTGTATACTTGGAGGGAGGAGATCGATAGCCATGGCTTCTTCGTCTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCCTAT GGAGTCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAA] [+] EMBL CF308437 [CCTTCTACATTCGATCTCGATCACTCACACTTACACTCGCAGTTTGCACAGCTACTTCATCTCAAGTAGTAGTAGTAATATACTAGCTAGATCGGTCGGCTATTTGCTGTAGCTAGCTAGCGTGAGCTAGCTTGGTTTGTAGAGCTTGTATACTTGGAGGGAGGAGATCGATAGCCATGGCTTCTTCGTCTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATG CTATGGGAGTCGTCGACGGCGACGACGACAACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8326#0 CTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGC 60 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 AGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCG 120 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 ACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGCTATGGAGGCGT 180 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 ACAGGCAGCAGCTGGAGGCGTACCAGATGGGGAGCCAGCATAGCGCCGCGGCGGCGGCGG 240 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CGGCGAGGGCGCCGCTGGTGCTCGAGGAGTTCATACCGGTGAAGAACATCGGGATCGACG 300 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 TCGTGGCGGCGGATAAGGCGGCGGCGGCGGGGGGCAACAGCGTGTCGTCGGAGAAGGCGA 360 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 GCTGGATGGTGTCGGCGCAGCTGTGGAACGCGCCGGCGTCGGCGTCGGCGGCGGACACGG 420 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CGGCGAAGGGGCCCCAGACGCCCAAGGAGCACTCGGAGCACCACCCGCTCGACACGAGCC 480 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CCAAGCTGATCACCGCCGCCGCGCTGCCGGAGCTCGCGCTCGCGCCCGCGGAGAAGGCGG 540 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CGGACGCGATCACCATCGCCGCCGGCGAGGTCGACAAGAAGCCGTACGCCCACGACAACG 600 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 GCGTCGTGGCGAGATCGAGAGAAGCCCAGAACGGCGGGAAGCCGCCGTCGACGCCATCGG 660 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 ACGGGCAGGCCGTCCCGCCGCCGCCACAGCCCCACCGGAAGGCGCGCCGTTGCTGGTCGC 720 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CGGAGCTGCACCGCCGCTTCGTCAATGCTCTTCAGATCCTCGGCGGCGCCCAAGTGGCGA 780 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CCCCGAAGCAGATTCGCGAGCTGATGAAGGTTGATGGATTGACCAATGATGAGGTGAAAA 840 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 GCCATCTCCAGAAGTACAGGTTGCACACAAGACGGCCGATGCCGTCGCCGGCGCCGCCGA 900 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CGGCAGCGACGCCGCAGCTGGTGGTGCTGGGAGGCATCTGGGTGCCGCCGGAGTACGCGA 960 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CGCAGGCGGCGGGGCCGGCCATCTACGGCGCGCACCCGGCGACGCAGCCGCACTACACGG 1020 consensus_8326#1 ------------------CCTTCTACA-TTCGATCTCGATCACTCACACTTAC-ACTCGC 40 ** ***** ** * ** ** ** * ** ** ** consensus_8326#0 CGGCGGTGGCGGCGCAGGAGTACTACCACCACCACCACCACCACCTGCAGCACCACCCCG 1080 consensus_8326#1 AGTTTGCACAGCTACTTCATCTCAAGTAGTAGTAGTAATAT-ACTAGCTAGATCGGTCGG 99 * * * * * * * * * * * * ** ** * * * * consensus_8326#0 CCGCCGCCGCCCTGGTGCACCACCGCGCCGTAGCCCCGCCCCCGCCGCTGCCGC-CTCAG 1139 consensus_8326#1 CTATT--TGCTGTAGCTAGCTAGCGTGAGCTAGCTTGGTTTGTAGAGCTTGTATACTTGG 157 * ** * * * * ** * **** * *** ** * consensus_8326#0 CAGCAGCTGGCCCCTCCCTACAGCGCCAAGTCGTCGGCGTCGGCGAGGCTCGGGTCCCCG 1199 consensus_8326#1 AGGGAGGAGATCGATAGCCATGGCTTC--TTCGTC--TTCTGACCTAACCCTAGACGACC 213 * ** * * * * * ** * ***** * * * * * * * consensus_8326#0 GACTCCGACGGCCGTGGCAGCGGCGGCGGCGGCGGCGCCGCCGCCTCCGGAGCCGGAAGG 1259 consensus_8326#1 ACCACCATCTGACG--GCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGA 271 * ** * * ** ** * *** ****** *** ** * ** * * * *** * * consensus_8326#0 GA-CATGTCCGAGAGCATCGAGGAGGAAGGCGAGGGCGAGGAGCGGGAGGACGACGACGA 1318 consensus_8326#1 GTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCC 331 * * **** * ** *** * ** *** * ** ** * consensus_8326#0 CGACGACGAGATGGCGGCGACCAACAACGCCCACG---CCGTCGACGGCGACGACGACAA 1375 consensus_8326#1 TCTCTGC---ATGCAGCTTCTCAATCATGCCTATGGAGTCGTCGACGGCGACGACGACAA 388 * * *** * *** * *** * * ********************* consensus_8326#0 CGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAA 1435 consensus_8326#1 CGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAA 448 ************************************************************ consensus_8326#0 CCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTA 1495 consensus_8326#1 CCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAATAATACTA 508 ************************************************************ consensus_8326#0 GCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAAAAAGG 1555 consensus_8326#1 GCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAA----- 563 ******************************************************* consensus_8326#0 GAAAAGTGATTTTTTGTTGGCGCGCGCGCGCGGAGAACGGGAGCCGAGCCGAGCCGAGCC 1615 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 GACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATG 1675 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 GAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTT 1735 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 TTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAAT 1795 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCT 1855 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 AGATGTAATTGTTTGGGAGATTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAG 1915 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 CCACCAATAATGCATAATGCAGGGTTTGCTTCTGCAATTAATGTGATTATATGTGAATGG 1975 consensus_8326#1 ------------------------------------------------------------ consensus_8326#0 TTCTAATTAAAAAAAAAA 1993 consensus_8326#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||