cluster # 8331

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8331 cluster # 8331 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8331#0 length = 812 sequences # 4

consensus_8331#1 length = 348 sequences # 1

consensusID : consensus_8331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 812
fasta sequence

                              [CCTTCCTCCTTGGCGCTCATCCACCACCACCTCCTCCAAGAGCCACCAAACGGCAGCAGGATGGCCGCTGTGATGAAAGCTCTCGCCGTCGCCTCGCCGATCTCGGCACGAGCACAGCCCCGACGATGCCCCGCAGGTTCGTCATGCGGCCCTAGCCAAAGCCTGCATTCATCGTTCGGCGGCGTCTCCCTGCTGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCA-CCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCTCCAGTTCGTCAAGAAGTGATCGCCTTTTTTTTTCTCCTTTTTTCCCCCTCACACTGCCTTGAGCATGTACTGTGTGCTCTTTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTGTTTGGTGTGTGCATTGATTGCGTTTCTTCTATGAGTGCAATTTTGTATTCGTAAATACCCCTATAAGCATTTCAGAGATTAATATGGAGTGG]

[+] EMBL CF293210             [CCTTCCTCCTTGGCGCTCATCCACCACCACCTCCTCCAAGAGCCACCAAACGGCAGCAGGATGGCCGCTGTGATGAAAGCTCTCGCCGTCGCCTCGCCGATCTCGGCACGAGCACAGCCCCGACGATGCCCCGCAGGTTCGTCATGCGGCCCTAGCCAAAGCCTGCATTCATCGTTCGGCGGCGTCTCCCTGCTGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCA CCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATG                                                                                                                                                                                                                                                                       ]
[+] EMBL CB680541             [                                            ACCAAACCGTAGCAGGATGGCCGCTGTGATGAAAGCTCTCGCCGTCGCCTCGCCGATCTCGGCACGAGCACAGCCCCGACGATGCCCCGCAGGTTCGTCAGGCGGCCCTAGCCAAAGCCTGCATTCATCGTTCGGCGGCGTCTCCCTGCAGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCGGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGGCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCA CCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCTCCAGTTCGTCAAGAAGTGATCGCCTTTTTTTTTCTCCTTTTTTCCCCCTCACACTGCCTTGAGCATGTACTGTGTGCTCTTTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTGTTTGGTGTGTGCATTGATTGCGTTTCTTCTATGAGTGCAATTTTGTATTCGTAAATACCCCTATAAGCATTTCAGAGATTAATATGGAGTGG]
[+] EMBL AF366557             [                                                                                                                                                                                                                                                                                                                           GTGCGGCTGACAAAGTCCGGGGACGGCACAAAGGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGAAGCTGGGCGACATCA CCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGTCCTCCAGTT                                                                                                                                                                                                                              ]
[-] EMBL CF293209             [                                                                                                                                                                                                                                                                                                                                                                                        CGTCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCACCCGGCTTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCTCCAGTTCGTCAAGAAGTGATCGCCTTTTTTTTTCTCCTTTTTTCCCCCTCACACTGCCTTGAGCATGTACTGTGTGCTCTTTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTGTTTGGTGTGTGCATTGATTGCGTTTCTTCTATGAGTGCAATTTTGTATTCGTAAATACCCCTATAAGCATTTCAGAGATTAAaaaa      ]




>consensus_8331#0
CCTTCCTCCTTGGCGCTCATCCACCACCACCTCCTCCAAGAGCCACCAAACGGCAGCAGG
ATGGCCGCTGTGATGAAAGCTCTCGCCGTCGCCTCGCCGATCTCGGCACGAGCACAGCCC
CGACGATGCCCCGCAGGTTCGTCATGCGGCCCTAGCCAAAGCCTGCATTCATCGTTCGGC
GGCGTCTCCCTGCTGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCG
ATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAG
CAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATC
TTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCACCGGC
TTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTC
AACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGAC
AGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCTCCAGTTCGTCAAGAAG
TGATCGCCTTTTTTTTTCTCCTTTTTTCCCCCTCACACTGCCTTGAGCATGTACTGTGTG
CTCTTTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTG
TTTGGTGTGTGCATTGATTGCGTTTCTTCTATGAGTGCAATTTTGTATTCGTAAATACCC
CTATAAGCATTTCAGAGATTAATATGGAGTGG

consensusID : consensus_8331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [ATTCATCGTTCGGCGGCGTCTCCCTGCAGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGAGCTGGGCGACATCACCGGCTTCTACATGATCGACGACGNNNGCGTGCTCCAGTCGGTGGACGTCAGCGNNNAGTTCGTCAACNNNNNNNNNNCGCTCATNNNNNNCNNNGNNN]

[+] EMBL CF195928             [ATTCATCGTTCGGCGGCGTCTCCCTGCAGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCGATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGAGCTGGGCGACATCACCGGCTTCTACATGATCGACGACGNNNGCGTGCTCCAGTCGGTGGACGTCAGCGNNNAGTTCGTCAACNNNNNNNNNNCGCTCATNNNNNNCNNNGNNN]




>consensus_8331#1
ATTCATCGTTCGGCGGCGTCTCCCTGCAGTGCCGGCGCACGAAGCCGGCGTCCCTCCACC
GGAGTCGGCCGTCGATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCC
AGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCA
ACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGAGCTGG
GCGACATCACCGGCTTCTACATGATCGACGACGNNNGCGTGCTCCAGTCGGTGGACGTCA
GCGNNNAGTTCGTCAACNNNNNNNNNNCGCTCATNNNNNNCNNNGNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8331#0      CCTTCCTCCTTGGCGCTCATCCACCACCACCTCCTCCAAGAGCCACCAAACGGCAGCAGG 60
consensus_8331#1      ------------------------------------------------------------
                                                                                  

consensus_8331#0      ATGGCCGCTGTGATGAAAGCTCTCGCCGTCGCCTCGCCGATCTCGGCACGAGCACAGCCC 120
consensus_8331#1      ------------------------------------------------------------
                                                                                  

consensus_8331#0      CGACGATGCCCCGCAGGTTCGTCATGCGGCCCTAGCCAAAGCCTGCATTCATCGTTCGGC 180
consensus_8331#1      ----------------------------------------------ATTCATCGTTCGGC 14
                                                                    **************

consensus_8331#0      GGCGTCTCCCTGCTGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCG 240
consensus_8331#1      GGCGTCTCCCTGCAGTGCCGGCGCACGAAGCCGGCGTCCCTCCACCGGAGTCGGCCGTCG 74
                      ************* **********************************************

consensus_8331#0      ATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAG 300
consensus_8331#1      ATGCAGGTGGTGATGATGGCGGCGAGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAG 134
                      ************************************************************

consensus_8331#0      CAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATC 360
consensus_8331#1      CAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCACCAACGGCGTGGCCATC 194
                      ************************************************************

consensus_8331#0      TTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCAGAGCTCGGCGACATCACCGGC 420
consensus_8331#1      TTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGAGCTGGGCGACATCACCGGC 254
                      ************************************** ***** ***************

consensus_8331#0      TTCTACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTC 480
consensus_8331#1      TTCTACATGATCGACGACGNNNGCGTGCTCCAGTCGGTGGACGTCAGCGNNNAGTTCGTC 314
                      *******************   ***************************   ********

consensus_8331#0      AACGGCAAGCCGGCGCTCATCGAGGCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGAC 540
consensus_8331#1      AACNNNNNNNNNNCGCTCATNNNNNNCNNNGNNN-------------------------- 348
                      ***          *******      *                                 

consensus_8331#0      AGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCTCCAGTTCGTCAAGAAG 600
consensus_8331#1      ------------------------------------------------------------
                                                                                  

consensus_8331#0      TGATCGCCTTTTTTTTTCTCCTTTTTTCCCCCTCACACTGCCTTGAGCATGTACTGTGTG 660
consensus_8331#1      ------------------------------------------------------------
                                                                                  

consensus_8331#0      CTCTTTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTG 720
consensus_8331#1      ------------------------------------------------------------
                                                                                  

consensus_8331#0      TTTGGTGTGTGCATTGATTGCGTTTCTTCTATGAGTGCAATTTTGTATTCGTAAATACCC 780
consensus_8331#1      ------------------------------------------------------------
                                                                                  

consensus_8331#0      CTATAAGCATTTCAGAGATTAATATGGAGTGG 812
consensus_8331#1      --------------------------------