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Oryza sativa
cluster # 8334 cluster # 8334       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8334#0 length = 934 sequences # 4  
consensus_8334#1 length = 307 sequences # 1  

consensusID : consensus_8334#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 934
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCGTTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTCACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTGGGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGATTAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCGCGACCACCCCGAATGCAAAAACATCA-CCTTTTCAG-CAAACGACCTCTCATTGNATACTCGGGTGCCAGATAGCCAAATGTGCC-GCAATCGCTG-GCTGA-ATGAAGCTTCTTCTCAT-ATATAGCTTGGGGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGCTGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGCCTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT]

[-] EMBL CB001033             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCGTTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTCACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA752594             [                                                                                                                                                   CTAAACTTTTCAAACATTGGAACCCCCCGATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTGGGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGATTAACCTTGCTTTCCTCAAGGGAG TG CGATGTTTGACCGACCAGCAACAGTCTCGAGCGCGACCACCCCGAATGCAAAAACATCA CCTTTTCAG CAAACGACCTCTCATTGNATACTCGGGTGCCAGATAGCCAAATGTGCC GCAATCGCTG GCTGA ATGAAGCTTCTTCTCAT ATATAGCTTGGGGAGTCCAAAGTCCGAT                                                                                                                                   ]
[+] EMBL CB632092             [                                                                                                                                                      AACTTTTCAAACATTGGAA CTCTTTATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTCCCTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTGGGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGATTAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCGCGACCACCCCGAATGCAAAAACATCAGCCTTTTCAGTCAAACGACCTCTCATTGCATACTCGGGTGCCAGATAGCCAAATGTGCCGGCAATCGCTGTGCTGATATGAGTCTTCTTCTCATCATATAGCTTGGCGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGCTGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGCCTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT]
[-] EMBL C22666               [                                                                                                                                                                                               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTC TTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGNTGACTCTCAAGGNTTCATCCCTGCTGAANTCTTTGATTCTTGGGNCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGNTCCATGCCCATCCAAAGAGATTAACCTTGNTTTCCTCAAGGGAGTTGTCGATGTT                                                                                                                                                                                                                                                                                                                  ]


>consensus_8334#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCG TTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTC ACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATAC CACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTA TTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCC CACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCC TGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTC CGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGC ACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTG GGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGAT TAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCG CGACCACCCCGAATGCAAAAACATCACCTTTTCAGCAAACGACCTCTCATTGNATACTCG GGTGCCAGATAGCCAAATGTGCCGCAATCGCTGGCTGAATGAAGCTTCTTCTCATATATA GCTTGGGGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGC TGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGC CTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT



consensusID : consensus_8334#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTATNATNAACNTTGAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGGA]

[-] EMBL AU033019             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTATNATNAACNTTGAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGGA]


>consensus_8334#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTATNATNAACNTT GAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTTGTGCCCACTGAACTCGG GGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACT CCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTCCGGTGAGCATGG CCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAA CATGGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8334#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCG 60
consensus_8334#1      ------------------------------------------------------------
                                                                                  

consensus_8334#0      TTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTC 120
consensus_8334#1      ------------------------------------------------------------
                                                                                  

consensus_8334#0      ACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATAC 180
consensus_8334#1      ------------------------------------------------------------
                                                                                  

consensus_8334#0      CACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTA 240
consensus_8334#1      -----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTA 49
                                 ** ** ***** ***   *  *    ***** *  *  ***  ** ***

consensus_8334#0      TTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCC 300
consensus_8334#1      TNATNAACNTTGAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTT-GTGCC 108
                      * ** *** ***************** ***************** ********* *****

consensus_8334#0      CACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCC 360
consensus_8334#1      CACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCC 168
                      ************************************************************

consensus_8334#0      TGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTC 420
consensus_8334#1      TGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTC 228
                      ********************************************************* **

consensus_8334#0      CGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGC 480
consensus_8334#1      CGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGC 288
                      ************************************************************

consensus_8334#0      ACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTG 540
consensus_8334#1      ACATGAGTGCAACATGGGA----------------------------------------- 307
                      *****************                                           

consensus_8334#0      GGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGAT 600
consensus_8334#1      ------------------------------------------------------------
                                                                                  

consensus_8334#0      TAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCG 660
consensus_8334#1      ------------------------------------------------------------
                                                                                  

consensus_8334#0      CGACCACCCCGAATGCAAAAACATCACCTTTTCAGCAAACGACCTCTCATTGNATACTCG 720
consensus_8334#1      ------------------------------------------------------------
                                                                                  

consensus_8334#0      GGTGCCAGATAGCCAAATGTGCCGCAATCGCTGGCTGAATGAAGCTTCTTCTCATATATA 780
consensus_8334#1      ------------------------------------------------------------
                                                                                  

consensus_8334#0      GCTTGGGGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGC 840
consensus_8334#1      ------------------------------------------------------------
                                                                                  

consensus_8334#0      TGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGC 900
consensus_8334#1      ------------------------------------------------------------
                                                                                  

consensus_8334#0      CTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT 934
consensus_8334#1      ----------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)