These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 934 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCGTTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTCACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTGGGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGATTAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCGCGACCACCCCGAATGCAAAAACATCA-CCTTTTCAG-CAAACGACCTCTCATTGNATACTCGGGTGCCAGATAGCCAAATGTGCC-GCAATCGCTG-GCTGA-ATGAAGCTTCTTCTCAT-ATATAGCTTGGGGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGCTGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGCCTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT] [-] EMBL CB001033 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCGTTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTCACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCT ] [+] EMBL CA752594 [ CTAAACTTTTCAAACATTGGAACCCCCCGATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTGGGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGATTAACCTTGCTTTCCTCAAGGGAG TG CGATGTTTGACCGACCAGCAACAGTCTCGAGCGCGACCACCCCGAATGCAAAAACATCA CCTTTTCAG CAAACGACCTCTCATTGNATACTCGGGTGCCAGATAGCCAAATGTGCC GCAATCGCTG GCTGA ATGAAGCTTCTTCTCAT ATATAGCTTGGGGAGTCCAAAGTCCGAT ] [+] EMBL CB632092 [ AACTTTTCAAACATTGGAA CTCTTTATACCACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTATTATTCCCTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTGGGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGATTAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCGCGACCACCCCGAATGCAAAAACATCAGCCTTTTCAGTCAAACGACCTCTCATTGCATACTCGGGTGCCAGATAGCCAAATGTGCCGGCAATCGCTGTGCTGATATGAGTCTTCTTCTCATCATATAGCTTGGCGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGCTGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGCCTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT] [-] EMBL C22666 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATAATAAGTAATTCTATTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTC TTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGNTGACTCTCAAGGNTTCATCCCTGCTGAANTCTTTGATTCTTGGGNCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGNTCCATGCCCATCCAAAGAGATTAACCTTGNTTTCCTCAAGGGAGTTGTCGATGTT ] consensusID : consensus_8334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTATNATNAACNTTGAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGGA] [-] EMBL AU033019 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTATNATNAACNTTGAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTTGTGCCCACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCCTGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTCCGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGCACATGAGTGCAACATGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8334#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAGGAAAATCAGATGAATATACACCG 60 consensus_8334#1 ------------------------------------------------------------ consensus_8334#0 TTGGATCAAATATGCTACTAGTATATTCTAGCAGTAGAATGTACCGTAAAAGTCCTCTTC 120 consensus_8334#1 ------------------------------------------------------------ consensus_8334#0 ACACAAACACCTGCGAATGCTCCCAAACTAAACTTTTCAAACATTGGAACCCCCCGATAC 180 consensus_8334#1 ------------------------------------------------------------ consensus_8334#0 CACGGCAGGAGTTGTTATTTTTATTTCGATGATACAATTTCAGAATAATAAGTAATTCTA 240 consensus_8334#1 -----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCANANNANNAAGNNATNCTA 49 ** ** ***** *** * * ***** * * *** ** *** consensus_8334#0 TTATTAACTTTGAATATACAAGTTACTAACTGATAAACGAAAGTTCACTCTCTTTGTGCC 300 consensus_8334#1 TNATNAACNTTGAATATACAAGTTACNAACTGATAAACGAAAGTNCACTCTCTT-GTGCC 108 * ** *** ***************** ***************** ********* ***** consensus_8334#0 CACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCC 360 consensus_8334#1 CACTGAACTCGGGGGTGGCAGATCCTGCGTAGTTTGTGAAGTAGCTGCTGTCCCCTTCCC 168 ************************************************************ consensus_8334#0 TGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTCTC 420 consensus_8334#1 TGTGCAGCCACTCCGTGATGTAGCTCGGCTTCATGATCACCTCAGCCACCTCAACGTNTC 228 ********************************************************* ** consensus_8334#0 CGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGC 480 consensus_8334#1 CGGTGAGCATGGCCACGACCTTTGACATCGGGGGTCGCTGGTGCGGTGAGCCCTGGGTGC 288 ************************************************************ consensus_8334#0 ACATGAGTGCAACATGGATGACTCTCAAGGCTTCATCCCTGCTGAACTCTTTGATTCTTG 540 consensus_8334#1 ACATGAGTGCAACATGGGA----------------------------------------- 307 ***************** consensus_8334#0 GGTCAACGATTTCTAGAGCTTGCTCCTTTTCATACAGGCTCCATGCCCATCCAAAGAGAT 600 consensus_8334#1 ------------------------------------------------------------ consensus_8334#0 TAACCTTGCTTTCCTCAAGGGAGTTGTCGATGTTTGACCGACCAGCAACAGTCTCGAGCG 660 consensus_8334#1 ------------------------------------------------------------ consensus_8334#0 CGACCACCCCGAATGCAAAAACATCACCTTTTCAGCAAACGACCTCTCATTGNATACTCG 720 consensus_8334#1 ------------------------------------------------------------ consensus_8334#0 GGTGCCAGATAGCCAAATGTGCCGCAATCGCTGGCTGAATGAAGCTTCTTCTCATATATA 780 consensus_8334#1 ------------------------------------------------------------ consensus_8334#0 GCTTGGGGAGTCCAAAGTCCGATATCTTTGGGGTGAGATCAGTGTCGAGTAGTACATTGC 840 consensus_8334#1 ------------------------------------------------------------ consensus_8334#0 TGGCTTTGATGTCCCTATGCACAATGCGCACACTCGACTCCTCGTGAAGATAAGTTAGGC 900 consensus_8334#1 ------------------------------------------------------------ consensus_8334#0 CTCTTGCAATGCCTAAAATTATCTCAAAGCGTTT 934 consensus_8334#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||