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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 592 fasta sequence
[AGGCCCGCCTCCGGATGACGGTGAGGGGTGAGGACCGGGGCCCGGGGCGCTGCACGTCGCCTCCGCCGCGGGATGCT-CCGGTGTGCTCGTACCTGGTCGAGGAGCTCCAGGTGGACGTCGACGCCGCCGACGATTCAGGCGATACACCTCTGGCTTATGCAGTTCGTGGTCGTTCCATCGATGGTGTGAAGTATCTTCTTGACCATGGTTCCAATCCAGATAAGCCTGATAATAAAGGATATACACCTCTCCATGTGGCAGCTATTAAAGGTCCACTTATATG-CACATTGAATACATA-TCTA-TTATCATAT-GCATGCAGG--A-C-CTGC--TTT--AAGA-G-TTTTGTTT-CTATACCGGAGGGTTGTAGATAATGAAATTTGCAACAGATTGTGAGATATCTTGCTGGACAAGAACCAGTTGTTTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACA-TTTCATGGATAGGACAGTG-TTCATT--CAACCGTG-CAGAGCTA-CCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGT-CAGTG-TTG---TTTG-AAATT-AAAAAGGCC-ATACTTATACTATGATGCTATGTATTGTAAAAAA]
[+] EMBL BI803321 [AGGCCCGCCTCCGGATGACGGTGAGGGGTGAGGACCGGGGCCCGGGGCGCTGCACGTCGCCTCCGCCGCGGGATGCT CCGGTGTGCTCGTACCTGGTCGAGGAGCTCCAGGTGGACGTCGACGCCGCCGACGATTCAGGCGATACACCTCTGGCTTATGCAGTTCGTGGTCGTTCCATCGATGGTGTGAAGTATCTTCTTGACCATGGTTCCAATCCAGATAAGCCTGATAATAAAGGATATACACCTCTCCATGTGGCAGCTATTAAAGGTCCACTTATATG CACATTGAATACATA TCTA TTATCATAT GCATGCAGG A C CTGC TTT AAGA G TTTTGTTT CTATACCGGAGGGTTGTAGATAATGAAATTTGCAACAGATTGTGAGATATCTTGCTGGACAAGAACCAGTTG CTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACA TTTCATGGATAGGACAGTG TTCATT CAACCGTG CAGAGCTA CCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGT CAGTG TTG TTTG AAATT AAAAAGGCC ATACTTATACTATGATGCTATGTATTGTAAAAAA]
[+] EMBL BI804472 [ CGGGATGCTCCCGGTGTGCTCGTACCTGTTCGAGGAGCTCCAGGTGGACGTCGACGCCGCCGACGATTCAGGCGATACACCTCTGGCTTATCCAGTTCGTGGTCGTTCCATCGATGGTGTGAAGTATCTTCTTGACCATGGTTCC ATCCAGATAAGCCTGATAATAAAGGATATACACCTCTCCATGTGGCAGCTATTAAAGGTCCACTTATATGCCACATTGAATACATACTCTACTTATCATAT GCATGCAGGACA C CTGCCTTTTAAAAGACGTTTTTGTTTCCTATACCGGAGGGTTGTAGATAATGAAATTTGC ACAGATTGTGAGATATCTTGCTGGACAAGAA CAGTTGTTTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACACTTTCATGGATAGGACAGTGCTTCATT CAACCGTG CAGAGCTA CCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGT CAGTG TTG TTTG AAATTAAAAAAGGCCAATACTTATACTATGATGCTATGTATTGTAAAAAA]
[+] EMBL BI803071 [ CGATACACCTCTGGCTTATGCAGTTCGTGGTCGTTCCATCGATGGTGTGAAGTATCTTCTTGACCATGGTTCCAATCCAGATAAGCCTGATAATAAAGGATATACACCTCTCCATGTGGCAGCTATTAAAGGTCCACTTATATG CACATTGAATACATA TCTA TTATCATAT GCATGCAGG A CACTGC TTT AAGA G TTTTGTTT CTATACCGGAGGGTTGTAGATAATGAAATTTGCAACAGATTGTGAGATATCTTGCTGGACAAGAACAAGTTGTTTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACA TTTCATGGATAGGACAGTG TTCATTTCCAACCGTGCCAGAGCTACCCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGT CAGTG TTG TTTG AAATT AAAAA GCC CCACTTATACTATGATGCTATGTATTGTAAAAAA]
[+] EMBL BI803161 [ CAC TTGAATACATA TCTA TTATCATATGGCATGCAGG ACC CTGC TTT AAGA G TTTTGTTT CTATACCGGAGGGTTGTAGATAATGAAATTTGCCACAGATTGTGAGATATCTTGCTGGACAAGAA CAGTTGTTTAATTGTGGTCATTCAAGTCTGAAAATATGTTATCAACA TTTCATGGATAGGACAGTG TTCATT CAACCGTG CAGAGCTA CCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCCAGTGTTTGTTTTTTGAAAATT TAAAAAGCC ATCCTTATACTATGATGCTATGTATTGTAAAAAA]
consensusID : consensus_8337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence
[GGATGACCCCCTGCTGGGCCTTTATCCAAGTTCGTGTTCGTTTCCCATCGAGTGGGTGTGAAGTATCTTTCTTTGCCCATGGTTCCCAAGTCCAAGATAACGCCTGATAATAAAGGATATCACCACCCTCTGTCCCATGTGCCCAGCTATTAAAGGTCCACTTATATGGCACATGTGAATACATGATGCTGATTATGCATAATGGCATGGCCAGGACCCTGGCTTTAAGAGTTTTGTTTGCTATACCCGGAGGTTTGTAGATGAATGGAAATGTTGCCAACAGATTGGTGAGATATCTTGGCTGGACAAGAACACAGTTGGTTTAATTGTGGTCATTCCAAGTCTGAAAATATGGTTATCAACATGTTCCATGGGATAGGACCAGTGTTCATTCAACCGTGGCAGAGCTACCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCAGTGTTGTTTGAAATTAAAAAGCCATACTTATACTATGGATGCTATGTATTGTAAAAAA]
[+] EMBL BI804146 [GGATGACCCCCTGCTGGGCCTTTATCCAAGTTCGTGTTCGTTTCCCATCGAGTGGGTGTGAAGTATCTTTCTTTGCCCATGGTTCCCAAGTCCAAGATAACGCCTGATAATAAAGGATATCACCACCCTCTGTCCCATGTGCCCAGCTATTAAAGGTCCACTTATATGGCACATGTGAATACATGATGCTGATTATGCATAATGGCATGGCCAGGACCCTGGCTTTAAGAGTTTTGTTTGCTATACCCGGAGGTTTGTAGATGAATGGAAATGTTGCCAACAGATTGGTGAGATATCTTGGCTGGACAAGAACACAGTTGGTTTAATTGTGGTCATTCCAAGTCTGAAAATATGGTTATCAACATGTTCCATGGGATAGGACCAGTGTTCATTCAACCGTGGCAGAGCTACCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCAGTGTTGTTTGAAATTAAAAAGCCATACTTATACTATGGATGCTATGTATTGTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8337#0 AGGCCCGCCTCCGGATGACGGTGAGGGGTGAGGACCGGGGCCCGGGGCGCTGCACGTCGC 60
consensus_8337#1 ------------------------------------------------------------
consensus_8337#0 CTCCGCCGCGGGATGCTCCGGTGTGCTCGTACCTGGTCGAGGAGCTCCAGGTGGACGTCG 120
consensus_8337#1 ------------------------------------------------------------
consensus_8337#0 ACGCCGCCGACGATTCAGGCGATACACCTCTGG---CTTATGCA-GTTCGTGGTCGTT-- 174
consensus_8337#1 ----------------GGATGACCCCCTGCTGGGCCTTTATCCAAGTTCGTGTTCGTTTC 44
* ** * * **** **** ** ******* *****
consensus_8337#0 CCATCGAT--GGTGTGAAGTATCTTC--TTGACCATGGTTCC--AATCCA-GATAA-GCC 226
consensus_8337#1 CCATCGAGTGGGTGTGAAGTATCTTTCTTTGCCCATGGTTCCCAAGTCCAAGATAACGCC 104
******* *************** *** ********** * **** ***** ***
consensus_8337#0 TGATAATAAAGGATAT-ACACCTCTC-----CATGTGGC-AGCTATTAAAGGTCCACTTA 279
consensus_8337#1 TGATAATAAAGGATATCACCACCCTCTGTCCCATGTGCCCAGCTATTAAAGGTCCACTTA 164
**************** ** * *** ****** * ********************
consensus_8337#0 TATG-CACAT-TGAATACATATCTATTATCATAT------GCATG--CAGGACCT--GCT 327
consensus_8337#1 TATGGCACATGTGAATACATGATGCTGATTATGCATAATGGCATGGCCAGGACCCTGGCT 224
**** ***** ********* * ** ** ***** ******* ***
consensus_8337#0 TTAAGAGTTTTGTTT-CTATACC-GGAGGGTTGTAGAT-AATGAAA---TTTGCAACAGA 381
consensus_8337#1 TTAAGAGTTTTGTTTGCTATACCCGGAGGTTTGTAGATGAATGGAAATGTTGCCAACAGA 284
*************** ******* ***** ******** **** ** ** *******
consensus_8337#0 TTG-TGAGATATCTTG-CTGGACAAGAAC-CAGTTG-TTTAATTGTGGTCATTC-AAGTC 436
consensus_8337#1 TTGGTGAGATATCTTGGCTGGACAAGAACACAGTTGGTTTAATTGTGGTCATTCCAAGTC 344
*** ************ ************ ****** ***************** *****
consensus_8337#0 TGAAAATATG-TTATCAACAT--TTCATGG-ATAGGAC-AGTGTTCATTCAACCGTG-CA 490
consensus_8337#1 TGAAAATATGGTTATCAACATGTTCCATGGGATAGGACCAGTGTTCATTCAACCGTGGCA 404
********** ********** * ***** ******* ****************** **
consensus_8337#0 GAGCTACCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCAGTGTTGTTTGAAATTA 550
consensus_8337#1 GAGCTACCATATTTATTTTGTGTTAGTACTTAGTTGTTCAGTCAGTGTTGTTTGAAATTA 464
************************************************************
consensus_8337#0 AAAAGGCCATACTTATACTATG-ATGCTATGTATTGTAAAAAA 592
consensus_8337#1 AAAAG-CCATACTTATACTATGGATGCTATGTATTGTAAAAAA 506
***** **************** ********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||