These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1432 fasta sequence [AAAACTAAAGGAAAACAAATTCCTCTACATTCAGGTTACCTCATTTCTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAGCTTCACCCCCGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAAAGGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTCACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAAATCCTTTCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAAAACTGTGTATCATGTACAAGTGGATTGCTTGCTCCAACTGGTGGAGATCCCGTAAAGTATGGAGGAAAAGCCTGTAAATTGCATTTCTAGCTTAATTTGGAAGCACATTTGAGCAACAGCCAAAAAATATGGGGTAAAGAGAAAAGAGATAAGCTAACCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGAACAGCAAAATAAATCCCCGATGCTATGCAGTTAAAATCAAAATACCCGAACTTATCTGAATATGAAAAATTCCAGATGAGAAGTGAGTGTGTCAGTAGAGTCAAATTGAACATGCAGAACACAAACGGCAATGTACTCAGCCAAAGCAAGATGATTCAAGCAATCCAACGCAGCAATAGACAGTTAGACACTATGATGAGATGAATTTGATAACATGTGATCTATTAGAATATTGAGGGTGTGTTCGCTACCAGGGGATGGGAATGTGCACAGTGCGCACGGAAAACAGGACAGTTTATTAGCACGTGATTAATTAAGTACTCCCTCCGTTTTGTAATGTATGACGCTGTTGACTTTTCGACCAGCGTTTGACCATTCGTTTTATTCAAAATTTTTGTGCAAATATAAAAATATTTATATCATGCTTAAAGAATACTTGATAACGAATCAAGTCATAATAAAATAAATGATAATTACATAAATTTCTTGAATAAGACGAATGATCAAACGTTGGACAAAAAGTCAATGGCGTCATACATTAAAATATGGAGGTAGTATTTGCTTTTTTTTTCAAAAATAGATTAATTTGATTTTTTAAGCAACTTTCATATAGAAAATTTTTTTAAAAAAAACACACTGTTTAGTAGTTTGAAAAGCGTGCACGCGGAAAACGAGGGAGAGGGGTTGGGAAGAGAGGCATCCGAACACACCCTGAGGGTATTTGACAATGTTTGTTTATACCACAATTGTCTTGTGGACAAAGAAATTTAGATTTAGAATCATATTAAAA] [+] EMBL CB627263 [AAAACTAAAGGAAAACAAATTCCTCTACATTCAGGTTACCTCATTTCTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAGCTTCACCCCCGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAAAGGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTCACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAAATCCTTTCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAAAACTGTGTATCATGTACAAGTGGATTGCTTGCTCCAACTGGTGGAGATCCCGTAAAGTATGGAGGAAAAGCCTGTAAATTGCATTTCTAGCTTAATTTGGAAGCACATTTGAGCAACAGCCAAAAAATATGGGGTAAAGAGAAAAGAGATAAGCTAACCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGAACAGCAAAATAAATCCCCGATGCTATGCAGTTAAAATCAAAATACCCGAACTTATCTGAATATGAAAAATTCCAGATGAGAA ] [-] EMBL CB627262 [ GAACAGCAAAATAAATCACCGATGCTATGCAGTTAAAATCAAAATACCCGAACTTATCTGAATATGAAAAATTCCAGATGAGAAGTGAGTGTGTCAGTAGAGTCAAATTGAACATGCAGAACACAAACGGCAATGTACTCAGCCAAAGCAAGATGATTCAAGCAATCCAACGCAGCAATAGACAGTTAGACACTATGATGAGATGAATTTGATAACATGTGATCTATTAGAATATTGAGGGTGTGTTCGCTACCAGGGGATGGGAATGTGCACAGTGCGCACGGAAAACAGGACAGTTTATTAGCACGTGATTAATTAAGTACTCCCTCCGTTTTGTAATGTATGACGCTGTTGACTTTTCGACCAGCGTTTGACCATTCGTTTTATTCAAAATTTTTGTGCAAATATAAAAATATTTATATCATGCTTAAAGAATACTTGATAACGAATCAAGTCATAATAAAATAAATGATAATTACATAAATTTCTTGAATAAGACGAATGATCAAACGTTGGACAAAAAGTCAATGGCGTCATACATTAAAATATGGAGGTAGTATTTGCTTTTTTTTTCAAAAATAGATTAATTTGATTTTTTAAGCAACTTTCATATAGAAAATTTTTTTAAAAAAAACACACTGTTTAGTAGTTTGAAAAGCGTGCACGCGGAAAACGAGGGAGAGGGGTTGGGAAGAGAGGCATCCGAACACACCCTGAGGGTATTTGACAATGTTTGTTTATACCACAATTGTCTTGTGGACAAAGAAATTTAGATTTAGAATCATATTAAAA] consensusID : consensus_8342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 836 fasta sequence [TCTTTTTATTTAAAGGAAAACAAATTCTCTTTCATTCAGGTTCCCTCATTTCTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAACTTCACAGACGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAGAGGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTAACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAGATCCTTCCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCCCGTAAAGTATGGAGGAGAAGCCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGCCACTCTTGCGTGGTACTGGACATCTTATCGCTCCAGCCCTGCTTGTAGTGCTTTGGCAGGATTTCATCATTGTTTCTGTTCTCAGCTTCTCTAGCTCCCTCATTTCCTCAATAAAGCCTGATGAAGGACTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGATCAGCAAAGTCCCTGCACAATCAATAATTCCTCAAAATGTAGAATAAATCAAGAGTAAAGAAATACTTTTGAGTCTAATTGCAGCATT] [+] EMBL CB668496 [TCTTTTTATTTAAAGGAAAACAAATTCTCTTTCATTCAGGTTCCCTCATTTCTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAACTTCACAGACGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAGAGGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTAACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAGATCCTTCCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCCCGTAAAGTATGGAGGAGAAGCCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGCCACTCTTGCGTGGTACTGGACATCTTATCGCTCCAGCCCTGCTTGTAGTGCTTTGGCAGGATTTCATCATTGTTTCTGTTCTCAGCTTCTCTAGCTCCCTCATTTCCTCAATAAAGCCTGATGAAGGACTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGATCAGCAAAGTCCCTGCACAATCAATAATTCCTCAAAATGTAGAATAAATCAAGAGTAAAGAAATACTTTTGAGTCTAATTGCAGCATT] [-] EMBL AA751614 [ ACAAATTTTNTTTCATTCAGGTNACNTCATTTNTCAGCAACATAGGTTTGACAGACTTTATTTGCCAAAACTAGNTTCACAGCCGACAAAACTGAACACAAAAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGNTTNTAGAGGGTGATAANTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAACTAATGTCAAAAGCCGGAATGTTCACCAAGCATGTCCTNTGAGGTCTGGTTGCCAGCGGTCATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAGATCCTTTCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGc ] consensusID : consensus_8342#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [GCATGTCCTNTGAGGTTTGGTTGCCAGCGGTCATGAAGCTCATAAAAGTAGCTTCAAGCCTTGTAATAGATCCTTCCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCCCGTAAAGTATGGAGGAGAAGCCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGCCACTCTTGCGTGGTACTGGACATCTTATCGCTCCAGCCCTGCTTGTAGTGCTTTGGCAGGATTTCATCATTGTTTCTGTTCTCAGCTTTTCTAGCTCCCTCATTTCCTCAATAAAGCCTGATGAAGGACTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGATCAGCAAAGTCCCTGAACCGCGGGAATCGAGAGGAGGGCGGAGAAAGGGGAGGGTGGGGAGGAGGGGAGAAGAGACACCGAGGCGCACAGCCCCCCCGCCTCCGGCTCGCCGCGCTCCCCGCTCGCTCGTCCGTTCGTCCGCTCGCTCGCGAGGCGAGAGAGGGGAGGAGAGG] [-] EMBL CA756157 [GCATGTCCTNTGAGGTTTGGTTGCCAGCGGTCATGAAGCTCATAAAAGTAGCTTCAAGCCTTGTAATAGATCCTTCCCTCACACAGTAACGAACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTTCCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCCCGTAAAGTATGGAGGAGAAGCCTTGCTCATAATGAAATCAGAAAGATCCTGTGTTAAATCATACTCCTTATATGACCTGCCACTCTTGCGTGGTACTGGACATCTTATCGCTCCAGCCCTGCTTGTAGTGCTTTGGCAGGATTTCATCATTGTTTCTGTTCTCAGCTTTTCTAGCTCCCTCATTTCCTCAATAAAGCCTGATGAAGGACTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGATCAGCAAAGTCCCTGAACCGCGGGAATCGAGAGGAGGGCGGAGAAAGGGGAGGGTGGGGAGGAGGGGAGAAGAGACACCGAGGCGCACAGCCCCCCCGCCTCCGGCTCGCCGCGCTCCCCGCTCGCTCGTCCGTTCGTCCGCTCGCTCGCGAGGCGAGAGAGGGGAGGAGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8342#1 TCTTTTTATTTAAAGGAAAACAAATTCTCTTTCATTCAGGTTCCCTCATTTCTCAGCAAC 60 consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 -----AAAACTAAAGGAAAACAAATTCCTCTACATTCAGGTTACCTCATTTCTCAGCAAC 55 consensus_8342#1 ATAGGTTTGACAGACTTTATTTGCCAAAACTAACTTCACAGACGACAAAACTGAACACAA 120 consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 ATAGGTTTGACAGACTTTATTTGCCAAAACTAGCTTCACCCCCGACAAAACTGAACACAA 115 consensus_8342#1 AAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAGA 180 consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 AAGATATGTACACCACTGCCGATGACAACGGCACAAAACTTGAAAACGGCAGCTTCTAAA 175 consensus_8342#1 GGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAAC 240 consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 GGGTGATAACTCATATGTACAAATTGGCCTTGAAGAGGCAAGCAAAGTTACAACTACAAC 235 consensus_8342#1 TAATGTCAAAAGCCGGAATGTTAACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTC 300 consensus_8342#2 ----------------------------GCATGTCCTNTGAGGTTTGGTTGCCAGCGGTC 32 consensus_8342#0 TAATGTCAAAAGCCGGAATGTTCACCAAGCATGTCCTCTGAGGTCTGGTTGCCAGCGGTC 295 ********* ****** *************** consensus_8342#1 ATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAGATCCTTCCCTCACACAGTAACG 360 consensus_8342#2 ATGAAGCTCATAAAAGTAGCTTCAAGCCTT-GTAATAGATCCTTCCCTCACACAGTAACG 91 consensus_8342#0 ATGAAGCTCATAAATGTAGCTTCAAGCCTTTGTAATAAATCCTTTCCTCACACAGTAACG 355 ************** *************** ****** ****** *************** consensus_8342#1 AACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTT 420 consensus_8342#2 AACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTT 151 consensus_8342#0 AACATTGCAACCCTTTGTTGGTATAGGAATGCTAAGCGACTGATCAACGTTTTGCAGCTT 415 ************************************************************ consensus_8342#1 CCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCC 480 consensus_8342#2 CCATGCACAGAACTGTGTATCATGTACAAGTGGATTGCTTGCTCGAACTGGTGGAGATCC 211 consensus_8342#0 CCATGCACAAAACTGTGTATCATGTACAAGTGGATTGCTTGCTCCAACTGGTGGAGATCC 475 ********* ********************************** *************** consensus_8342#1 CGTAAAGTATGGAGGAGAAGCCT--------TGCTCATAATGAAATCAGAAAGATCCTGT 532 consensus_8342#2 CGTAAAGTATGGAGGAGAAGCCT--------TGCTCATAATGAAATCAGAAAGATCCTGT 263 consensus_8342#0 CGTAAAGTATGGAGGAAAAGCCTGTAAATTGCATTTCTAGCTTAATTTGGAAGCACATTT 535 **************** ****** * ** *** * *** * * * consensus_8342#1 G--------TTAAATCATACTCCTTATAT--------GACCTGCCACTCTTGCGTGGTAC 576 consensus_8342#2 G--------TTAAATCATACTCCTTATAT--------GACCTGCCACTCTTGCGTGGTAC 307 consensus_8342#0 GAGCAACAGCCAAAAAATATGGGGTAAAGAGAAAAGAGATAAGCTAACCTTGC-TCATAA 594 * *** *** ** * ** ** * ***** * ** consensus_8342#1 TGGACATCTTATCGCTCCAGCCCTGC-TTGTAGTGCTTTGGCAGGATTTCATCATTGTTT 635 consensus_8342#2 TGGACATCTTATCGCTCCAGCCCTGC-TTGTAGTGCTTTGGCAGGATTTCATCATTGTTT 366 consensus_8342#0 TGAA-ATCAGAAAGATCCTGTGTTAAATCATACTCCTT--ATATGACCTGAACAGCAAAA 651 ** * *** * * *** * * * ** * *** * ** * * ** consensus_8342#1 CTGTTCTCAGCTTCTCT--AGCTC---CCTCATTTCCTCAATAAAGCCTGAT--GAAGGA 688 consensus_8342#2 CTGTTCTCAGCTTTTCT--AGCTC---CCTCATTTCCTCAATAAAGCCTGAT--GAAGGA 419 consensus_8342#0 TAAATCCCCGATGCTATGCAGTTAAAATCAAAATACCCGAACTTATCTGAATATGAAAAA 711 ** * * * * * ** * * * * ** ** * * ** *** * consensus_8342#1 CTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGA 748 consensus_8342#2 CTCGCGGTGTTCAGCAGATGTTCCATGCCCATGACAGTCAGTCAGGAATAAGATTTAAGA 479 consensus_8342#0 TTCCAGATGAGAAGTGAGTGTGTCA-GTAGAGTCAAATTGAACATGCAGAACACAAACGG 770 ** * ** ** *** ** * * * * ** * * ** * * * consensus_8342#1 TCAGCAAAGTCCCTGCACAATCAATAATTCCTCAAAATGTAGAATAAATCAAGAGTAAAG 808 consensus_8342#2 TCAGCAAAGTCCCTGAACCG-CGGGAATCGAGAGGAGGGCGGAGAAAGGGGAGGGTGGGG 538 consensus_8342#0 CAATGTACTCAGCCAAAGCAAGATGATTCAAGCAATCCAACGCAGCAATAGACAGTTAGA 830 * * * * * * * * * ** consensus_8342#1 AAATACTTTTGAGTCTAATTGC-AGCATT------------------------------- 836 consensus_8342#2 AGGAGGGGAGAAGAGACACCGA-GGCGCACAGCCCCCCCGCCTCCGGCTCGCCGCGCTCC 597 consensus_8342#0 CACTATGATGAGATGAATTTGATAACATGTGATCTATTAGAATATTGAGGGT-GTGTTCG 889 * * consensus_8342#1 ------------------------------------------------------------ consensus_8342#2 CCGCTCGCTCGTCCGTTCGTCCGCT---CGCTCGCGAGGCGAGAGAGGGGAGGAGAGG-- 652 consensus_8342#0 CTACCAGGGGATGGGAATGTGCACAGTGCGCACGGAAAACAGGACAGTTTATTAGCACGT 949 consensus_8342#1 ------------------------------------------------------------ consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 GATTAATTAAGTACTCCCTCCGTTTTGTAATGTATGACGCTGTTGACTTTTCGACCAGCG 1009 consensus_8342#1 ------------------------------------------------------------ consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 TTTGACCATTCGTTTTATTCAAAATTTTTGTGCAAATATAAAAATATTTATATCATGCTT 1069 consensus_8342#1 ------------------------------------------------------------ consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 AAAGAATACTTGATAACGAATCAAGTCATAATAAAATAAATGATAATTACATAAATTTCT 1129 consensus_8342#1 ------------------------------------------------------------ consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 TGAATAAGACGAATGATCAAACGTTGGACAAAAAGTCAATGGCGTCATACATTAAAATAT 1189 consensus_8342#1 ------------------------------------------------------------ consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 GGAGGTAGTATTTGCTTTTTTTTTCAAAAATAGATTAATTTGATTTTTTAAGCAACTTTC 1249 consensus_8342#1 ------------------------------------------------------------ consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 ATATAGAAAATTTTTTTAAAAAAAACACACTGTTTAGTAGTTTGAAAAGCGTGCACGCGG 1309 consensus_8342#1 ------------------------------------------------------------ consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 AAAACGAGGGAGAGGGGTTGGGAAGAGAGGCATCCGAACACACCCTGAGGGTATTTGACA 1369 consensus_8342#1 ------------------------------------------------------------ consensus_8342#2 ------------------------------------------------------------ consensus_8342#0 ATGTTTGTTTATACCACAATTGTCTTGTGGACAAAGAAATTTAGATTTAGAATCATATTA 1429 consensus_8342#1 --- consensus_8342#2 --- consensus_8342#0 AAA 1432 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||