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Oryza sativa
cluster # 8345 cluster # 8345       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8345#0 length = 1886 sequences # 5  

consensusID : consensus_8345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1886
fasta sequence
                              [CTAGGGCACTACTCGCCGCCGCAGGCGGCCGCGGGGGACGGGGGAGCGCCTCCGTGTCCCGGGTGCCCGCGCCGCGCAGAGGGGGCTCACATGGCTGGAAGGAAGGAAAATCCGGTGCTTACTGCTTGCCAAGCACCCAGTGGTCGAATCACACGAGCTCAAGCTGCTGCAAATCGTGGACGGTTTGGGTTTGCTCCCTCCGTATCACTACCCGCAAGAACTGAACGAAAGCAGACAGCAAAAGGAAAGACAAAAAGGGGAGCTTTGGATGAAATCACTAGTGCAAGTACTGCAACTTCAGCTCCTCAGCCTAAACGGCGCACAGTGCTCAAGGATGTAACCAACATCGGCTGTGCCAACTCATCCAAAAATTGCACCACCACGAGCAAGCTGCAGCAAAAGTCAAAGCCCACCCAAAGGGTGAAACAAATCCCGAGCAAAAAGCAGTGTGCAATGAAGGTTCCTAAGCTACCCCCTCCGGCTGTTGCTGGAACTTCATTTGTGATTGATTCTAAAAGTTCTGAAGAAACTCAAAAGGTGGAGCTTTTGGCAAAAGCAGAGGAACCCACAAATTTGTTTGAAAACGAGGGGTTACTGTCATTGCAGAATATTGAGCGAGACAGGGACAGTAATTGCCATGAGGCATTCTTTGAGGCAAGAAACGCCATGGATAAACATGAACTCGCTGACTCCAAGCCTGGTGACTCTAGTGGTTTAGGTTTTATAGATATTGACAATGATAATGGAAATCCTCAAATGTGTGCTTCCTATGCTTCAGAGATATACACAAATCTGATGGCCTCTGAGCTTATCAGAAGACCCAGGTCAAATTACATGGAGGTTTTGCAACGTGACATCACAAAGGGCATGCGAGGCATTCTCATTGATTGGCTTGTTGAGGTTTCTGAAGAATATAAGCTTGTGCCAGACACACTCTACCTAACCATTAATCTTATTGACCGATTTCTTTCTCAACATTATATTGAAAGACAGAAACTCCAACTTCTTGGAATAACAAGCATGCTGATTGCCTCGAAATATGAAGAGATATGTGCTCCTCGTGCTGAAGAATTTTGTTTCATAACTGACAATACATACACAAAAGCTGAGGTGCTGAAAATGGAGGGCCTGGTGCTTAATGATCTGGGGTTTCATCTATCTGTTCCAACAACAAAAACATTTCTCAGGAGATTCCTTAGAGCCGCACAGGCTTCTCGTAATGTTCCTTCAATTACCTTGGGATATCTGGCCAATTATCTTGCAGAGCTGACCCTGATCGATTACAGTTTCCTCAAATTTCTTCCTTCAGTGGTGGCAGCATCTGCAGTCTTTCTTGCAAGATGGACACTTGACCAATCTGACATTCCATGGAATCATACTCTTGAGCACTACACTTCTTACAAAAGCTCTGATATTCAAATATGTGTCTGTGCTCTACGGGAACTGCAGCATAACACCAGTAATTGCCCTCTCAATGCTATACGTGAAAAGTATAGGCAACAAAAGTTTGAGTGTGTAGCCAACCTGACATCACCGGAGCTGGGGCAGTCACTCTTCAGCTGACAAAGGCAATGGTATCA-GTTTCCTGTTAATCAACAACCGTTAGCAGCAGTCATTACCATGACTGCTTTCTGATTTGTTGTGTTGTCCTGAAGTGTTGTTTCCCGACCATTTTAGAGTCGTGCAGTAAAAAAAAAAGAAAAAGAAAAGGAGAGATAGCTTGCATTTGTTTGACCTTAAGTATGCCTTTAGTTGATAATTGTAAGAAAACACTCACTGTGTGTAGGCTGCCGCCTTTGGGTTGATAATTGTAAGATGATCCTGCTTGTATAACAAATGGTTGCTTGGTTTGACCGAGATTATGTTATTCCGTTATTAGAAAAAAA]

[+] EMBL AK106653             [CTAGGGCACTACTCGCCGCCGCAGGCGGCCGCGGGGGACGGGGGAGCGCCTCCGTGTCCCGGGTGCCCGCGCCGCGCAGAGGGGGCTCACATGGCTGGAAGGAAGGAAAATCCGGTGCTTACTGCTTGCCAAGCACCCAGTGGTCGAATCACACGAGCTCAAGCTGCTGCAAATCGTGGACGGTTTGGGTTTGCTCCCTCCGTATCACTACCCGCAAGAACTGAACGAAAGCAGACAGCAAAAGGAAAGACAAAAAGGGGAGCTTTGGATGAAATCACTAGTGCAAGTACTGCAACTTCAGCTCCTCAGCCTAAACGGCGCACAGTGCTCAAGGATGTAACCAACATCGGCTGTGCCAACTCATCCAAAAATTGCACCACCACGAGCAAGCTGCAGCAAAAGTCAAAGCCCACCCAAAGGGTGAAACAAATCCCGAGCAAAAAGCAGTGTGCAATGAAGGTTCCTAAGCTACCCCCTCCGGCTGTTGCTGGAACTTCATTTGTGATTGATTCTAAAAGTTCTGAAGAAACTCAAAAGGTGGAGCTTTTGGCAAAAGCAGAGGAACCCACAAATTTGTTTGAAAACGAGGGGTTACTGTCATTGCAGAATATTGAGCGAGACAGGGACAGTAATTGCCATGAGGCATTCTTTGAGGCAAGAAACGCCATGGATAAACATGAACTCGCTGACTCCAAGCCTGGTGACTCTAGTGGTTTAGGTTTTATAGATATTGACAATGATAATGGAAATCCTCAAATGTGTGCTTCCTATGCTTCAGAGATATACACAAATCTGATGGCCTCTGAGCTTATCAGAAGACCCAGGTCAAATTACATGGAGGTTTTGCAACGTGACATCACAAAGGGCATGCGAGGCATTCTCATTGATTGGCTTGTTGAGGTTTCTGAAGAATATAAGCTTGTGCCAGACACACTCTACCTAACCATTAATCTTATTGACCGATTTCTTTCTCAACATTATATTGAAAGACAGAAACTCCAACTTCTTGGAATAACAAGCATGCTGATTGCCTCGAAATATGAAGAGATATGTGCTCCTCGTGTTGAAGAATTTTGTTTCATAACTGACAATACATACACAAAAGCTGAGGTGCTGAAAATGGAGGGCCTGGTGCTTAATGATATGGGGTTTCATCTATCTGTTCCAACAACAAAAACATTTCTCAGGAGATTCCTTAGAGCCGCACAGGCTTCTCGTAATGTTCCTTCAATTACCTTGGGATATCTGGCCAATTATCTTGCAGAGCTGACCCTGATCGATTACAGTTTCCTCAAATTTCTTCCTTCAGTGGTGGCAGCATCTGCAGTCTTTCTTGCAAGATGGACACTTGACCAATCTGACATTCCATGGAATCATACTCTTGAGCACTACACTTCTTACAAAAGCTCTGATATTCAAATATGTGTCTGTGCTCTACGGGAACTGCAGCATAACACCAGTAATTGCCCTCTCAATGCTATACGTGAAAAGTATAGGCAACAAAAGTTTGAGTGTGTAGCCAACCTGACATCACCGGAGCTGGGGCAGTCACTCTTCAGCTGACAAAGGCAATGGTATCA GTTTCCTGTTAATCAACAACCGTTAGCAGCAGTCATTACCATGACTGCTTTCTGATTTGTTGTGTTGTCCTGAAGTGTTGTTTCCCGACCATTTTAGAGTCGTGCAGTAAAAAAAAAAGAAAAAGAAAAGGAGAGATAGCTTGCATTTGTTTGACCTTAAGTATGCCTTTAGTTGATAATTGTAAGAAAACACTCACTGTGTGTAGGCTGCCGCCTTTGGGTTGATAATTGTAAGATGATCCTGCTTGTATAACAAATGGTTGCTTGGTTTGACCG                              ]
[+] EMBL CA765339             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCATTCTCATTGATTGGCTTGTTGAGGTTTCTGAAGAATATAAGCTTGTGCCAGACACACTCTACCTAACCATTAATCTTATTGACCGATTTCTTTCTCAACATTATATTGAAAGACAGAAACTCCAACTTCTTGGAATAACAAGCATGCTGATTGCCTCGAAATATGAAGAGATATGTGCTCCTCGTGCTGAAGAATTTTGTTTCATAACTGACAATACATACACAAAAGCTGAGGTGCTGAAAATGGAGGGCCTGGTGCTTAATGATCTGGGGTTTCATCTATCTGTTCCAACAACAAAAACATTTCTCAGGAGATTCCTTAGAGCCGCACAGGCTTCTCGTAATGTTCCTTCAATTACCTTGGGATATCTGGCCAATTATCTTGCAGAGCTGACCCTGATCGATTACAGTTTCCTCAAATTTCTTCCTTCAGTGGTGGCAGCATCTGCAGTCTTTCTTGCAAGATGGACACTTGACCAATCTGACATTCCATGGAATCATACTCTTGAGCACTACACTTCTTACAAAAGCTCTGATATTCAAATATGTGTCTGTGCTCTACGGGAACTGCAGCATAACACCAGTAATTGCCCTCTCAATGCTATACGTGAAAAGTATAGGCAACAAAAGNTTGAGTGTGTAGCCAACCTGACATCACCGGAGCTGGGGCAGTCACTCTTCAGCTGACAAAGGCAATGGTATCAGGTTTCCTGGTAATCAACAACCGNTAGCAGCAGTCATTACCATGAC                                                                                                                                                                                                                                                                     ]
[-] EMBL CA759858             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAACAAGCATGCTGATTGCCTCGAAATATGAAGAGATATGTGCTCCTCGTGCTGAAGAATTTTGTTTCATAACTGNCGATACATACACAAAAGNTGAGGTGCTGAAAATGGAGGGCCTGGTGTTTAATGATCTGGGGTTTCATCTATCTGTTCCAACAACAAAAACATTTCTCAGGAGATTCCTTAGAGCCGCACAGGCTTCTCGTAATGTTCCTTCAATTACCTTGGGATATCTGGCCAATTATCTTGCAGAGCTGACCCTGATCGATTACAGTTTCCTCAAATTTCTTCCTTCAGTGGTGGCAGCATCTGCAGTCTTTCTTGCAAGATGGACACTTGACCAATCTGACATTCCATGGAATCATACTCTTGAGCACTACACTTTTTACAAAAGCTCTGATATTCAAATATGTGTCTGTGCTCTACGGGAACTGCAGCATAACACCAGTAATTGCCCTCTCAATGCTATACGTGAAAAGTATAGGCAACAAAAGTTTGAGTGTGTAGCCAACCTGACATCACCGGAGCTGGGGCAGTCACTCTTCAGCTGACAAAGGCAATGGTATCA GTTTCCTGTTAATCAACAACCGTTAGCAGCAGTCATTACCATGACTGCTTTTTGATTTGTTGTGTTGTCCTGAAGTGTTGTTTCCCGACCATTTTAGAGTCGTGCAGTAAAAAAAAAAAAAAAAa                                                                                                                                                                                     ]
[+] EMBL AU085810             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCAGCAGTCATTACCATGACTGCTTTCTGATTTGTTGTGTTGTCCTGAAGTGTTGTTTCCCGACCATTTTAGAGTCGTGCAGTAAAAAAAAAAGAANAAGAAAAGGAGAGATAGCTTGCATTTGTTTGACCTTAAGTATGCCTTTAGTTGATAATTGTAAGAAAACACTCACTGTGTGTAGGCTGCCGCCTTTGGGTTGATAATTGTAAGATGATCCTGCTTGTATAACAAATGGTTGCTTGGTTTGACCGAGATTATGTTATTCCGTTATTAGAAAAAAA]
[+] EMBL C28020               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    nAGCAGCAGTCATTCACATGNNTGCTTTCTNATTTNTNGTGTTGTCCTGAAGTGTTGTTTCCCGACCATTTTAGAGTCGTGCAGTAAAAAAAAAAGAAAAAGAAAAGGAGAGATAGCTTGCATTTTTTTGACCTTAAGTATGCCTTTAGTTGATAATTGTAAGAAAACACTCACTGTGTGTAGGCTGCCGCCTTTGGGTTGATAATTGTAAGATGATCCTGCTTGTATAACAAATGGTTG                                           ]


>consensus_8345#0 CTAGGGCACTACTCGCCGCCGCAGGCGGCCGCGGGGGACGGGGGAGCGCCTCCGTGTCCC GGGTGCCCGCGCCGCGCAGAGGGGGCTCACATGGCTGGAAGGAAGGAAAATCCGGTGCTT ACTGCTTGCCAAGCACCCAGTGGTCGAATCACACGAGCTCAAGCTGCTGCAAATCGTGGA CGGTTTGGGTTTGCTCCCTCCGTATCACTACCCGCAAGAACTGAACGAAAGCAGACAGCA AAAGGAAAGACAAAAAGGGGAGCTTTGGATGAAATCACTAGTGCAAGTACTGCAACTTCA GCTCCTCAGCCTAAACGGCGCACAGTGCTCAAGGATGTAACCAACATCGGCTGTGCCAAC TCATCCAAAAATTGCACCACCACGAGCAAGCTGCAGCAAAAGTCAAAGCCCACCCAAAGG GTGAAACAAATCCCGAGCAAAAAGCAGTGTGCAATGAAGGTTCCTAAGCTACCCCCTCCG GCTGTTGCTGGAACTTCATTTGTGATTGATTCTAAAAGTTCTGAAGAAACTCAAAAGGTG GAGCTTTTGGCAAAAGCAGAGGAACCCACAAATTTGTTTGAAAACGAGGGGTTACTGTCA TTGCAGAATATTGAGCGAGACAGGGACAGTAATTGCCATGAGGCATTCTTTGAGGCAAGA AACGCCATGGATAAACATGAACTCGCTGACTCCAAGCCTGGTGACTCTAGTGGTTTAGGT TTTATAGATATTGACAATGATAATGGAAATCCTCAAATGTGTGCTTCCTATGCTTCAGAG ATATACACAAATCTGATGGCCTCTGAGCTTATCAGAAGACCCAGGTCAAATTACATGGAG GTTTTGCAACGTGACATCACAAAGGGCATGCGAGGCATTCTCATTGATTGGCTTGTTGAG GTTTCTGAAGAATATAAGCTTGTGCCAGACACACTCTACCTAACCATTAATCTTATTGAC CGATTTCTTTCTCAACATTATATTGAAAGACAGAAACTCCAACTTCTTGGAATAACAAGC ATGCTGATTGCCTCGAAATATGAAGAGATATGTGCTCCTCGTGCTGAAGAATTTTGTTTC ATAACTGACAATACATACACAAAAGCTGAGGTGCTGAAAATGGAGGGCCTGGTGCTTAAT GATCTGGGGTTTCATCTATCTGTTCCAACAACAAAAACATTTCTCAGGAGATTCCTTAGA GCCGCACAGGCTTCTCGTAATGTTCCTTCAATTACCTTGGGATATCTGGCCAATTATCTT GCAGAGCTGACCCTGATCGATTACAGTTTCCTCAAATTTCTTCCTTCAGTGGTGGCAGCA TCTGCAGTCTTTCTTGCAAGATGGACACTTGACCAATCTGACATTCCATGGAATCATACT CTTGAGCACTACACTTCTTACAAAAGCTCTGATATTCAAATATGTGTCTGTGCTCTACGG GAACTGCAGCATAACACCAGTAATTGCCCTCTCAATGCTATACGTGAAAAGTATAGGCAA CAAAAGTTTGAGTGTGTAGCCAACCTGACATCACCGGAGCTGGGGCAGTCACTCTTCAGC TGACAAAGGCAATGGTATCAGTTTCCTGTTAATCAACAACCGTTAGCAGCAGTCATTACC ATGACTGCTTTCTGATTTGTTGTGTTGTCCTGAAGTGTTGTTTCCCGACCATTTTAGAGT CGTGCAGTAAAAAAAAAAGAAAAAGAAAAGGAGAGATAGCTTGCATTTGTTTGACCTTAA GTATGCCTTTAGTTGATAATTGTAAGAAAACACTCACTGTGTGTAGGCTGCCGCCTTTGG GTTGATAATTGTAAGATGATCCTGCTTGTATAACAAATGGTTGCTTGGTTTGACCGAGAT TATGTTATTCCGTTATTAGAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)