These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1038 fasta sequence [TTTTTTTTTTTTTTTTTTTGAAGGCAAAGCCTTCTTTATTTATTCCGGCCCAGTACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAGGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGGCGGCGGCGCGGAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGTACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGAGGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGAGGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTTGGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGCGACGCCATGGTGGCTGCTCAGCTCGTACTGGATGGTTTGCTGCTGGTTGATTTAATTTGGAGGAGCTGATATTTAGTAGTGATTAGTGAAGCTTCCGTGCATGGGAAGGAAGGAAGGAAGCTTCCTCTAGTTTTTCGTTTTCGAGTAATTTGTTTACGTGATTGCCGATATTATATCTTTAAATTAATAGAAAAAAAGCCTTTAC] [-] EMBL AU071140 [TTTTTTTTTTTTTTTTTTTGAAGGCAAAGCCTTCTTTATTTATTCCGGCCCAGTACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGNGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAG TGCGCCTCGAGGAGCTTCAGGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCC ] [-] EMBL CB680229 [ aaGCAAAGCTTTCTTTATTTATTTCGGCCCAGTACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAGGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGGCGGCGGCGCGGAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGTACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGAGGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGAGGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTTGGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGGGACGC ] [-] EMBL AK107822 [ CCTTCTTTATTTATTCCGGCCCAGTACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAGGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGGCGGCGGCGC GAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGTACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGAGGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGAGGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTTGGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGCGACGCCATGGTGGCTGCTCAGCTCGTACTGGATGGTTT ] [+] EMBL AK109284 [ CAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCACGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGAAGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGTACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGGCGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGCCGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAAGTTCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGACGGCGGCGCGGAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGTACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGAGGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGAGGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTTGGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGCGACGCCATGGTGGCTGCTCAGCTCGTACTGGATGGTTTGCTGCTGGTTGATTTAATTTGGAGGAGCTGATATTTAGTAGTGATTAGTGAAGCTTCCGTGCATGGGAAGGAAGGAAGGAAGCTTCCTCTAGTTTTTCGTTTTCGAGTAATTTGTTTACGTGATTGCCGATATTATATCTTTAAATTAATAGAAAAAAAGCCTTTAC] consensusID : consensus_8352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [TATTCCCGTCCAAGACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCACGCGACAACAACATTATCCCACTCTTCATTTTGCCGCCATTGACCTCCCCGGAGCAATGAACATCTCCTTCATCGCCGTGAAAGGTTCTAGCACCTTGGCCCTGACCGGGAGGCACGCCTTGATCCTGACGACGACGGCGTACTCCTTCGCCCAACGGCAGAGGTCGGGGAACTCGTCACCGGTGACCAGGCTCACCCCGGCGACCTCCTCTACCACCTCCAGCCAGAACGCGTACCCACTGGCGGCCAGGACGAGGTAGCCGATGGCGTCACCACCAAAAAATCCCCTCCCCTTGAGCTGCGCCTCAAGGAGCTTCAGGTTCTCCTTGATGTCCGCCGCGAAGCCATCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCAAGGCAAAACGGCTT] [+] EMBL CB680230 [TATTCCCGTCCAAGACACTACACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCACGCGACAACAACATTATCCCACTCTTCATTTTGCCGCCATTGACCTCCCCGGAGCAATGAACATCTCCTTCATCGCCGTGAAAGGTTCTAGCACCTTGGCCCTGACCGGGAGGCACGCCTTGATCCTGACGACGACGGCGTACTCCTTCGCCCAACGGCAGAGGTCGGGGAACTCGTCACCGGTGACCAGGCTCACCCCGGCGACCTCCTCTACCACCTCCAGCCAGAACGCGTACCCACTGGCGGCCAGGACGAGGTAGCCGATGGCGTCACCACCAAAAAATCCCCTCCCCTTGAGCTGCGCCTCAAGGAGCTTCAGGTTCTCCTTGATGTCCGCCGCGAAGCCATCCCGCACCTCGCCGTCGTCCGTCGACCACAGCGCAAGGCAAAACGGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8352#0 TTTTTTTTTTTTTTTTTTTGAAGGCAAAGCCTTCTTTATTTATTCCGGCCCAGTACACTA 60 consensus_8352#1 ----------------------------------------TATTCCCGTCCAAGACACTA 20 ****** * *** ****** consensus_8352#0 CACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCGCGCGACAGCAACATTATCCCA 120 consensus_8352#1 CACACCATGACAAAACAAAAGTGGCCATCACTTTCTGCACGCGACAACAACATTATCCCA 80 ************************************** ******* ************* consensus_8352#0 CGCTTCATTTTGCCGCCATTGACCTCGCCGTCGCCATGAACATCTCCTTCATCGCCGTGA 180 consensus_8352#1 CTCTTCATTTTGCCGCCATTGACCTCCCCGGAGCAATGAACATCTCCTTCATCGCCGTGA 140 * ************************ *** ** ************************* consensus_8352#0 AGTGTTCGAGCAGCTTGGCCCTGTCCGGGAGGCACGCCTTGATCCTGTCGTCGGCGGCGT 240 consensus_8352#1 AAGGTTCTAGCACCTTGGCCCTGACCGGGAGGCACGCCTTGATCCTGACGACGACGGCGT 200 * **** **** ********** *********************** ** ** ****** consensus_8352#0 ACTCCTTCGCCCAGCGGCAGAGGTCGGGGAACTCGTCGCCGGTGACCAGGCTCACCCCGG 300 consensus_8352#1 ACTCCTTCGCCCAACGGCAGAGGTCGGGGAACTCGTCACCGGTGACCAGGCTCACCCCGG 260 ************* *********************** ********************** consensus_8352#0 CGACCTCCTCTAGCACCTCCAGCCAGTAGGCGTACCCACTGGCGGCCAGGTCGAGGTAGC 360 consensus_8352#1 CGACCTCCTCTACCACCTCCAGCCAGAACGCGTACCCACTGGCGGCCAGGACGAGGTAGC 320 ************ ************* * ********************* ********* consensus_8352#0 CGATGGCGTCGCCTCCGAAGAATCGCCTCCCCTTGAGCTGCGCCTCGAGGAGCTTCAGGT 420 consensus_8352#1 CGATGGCGTCACCACCAAAAAATCCCCTCCCCTTGAGCTGCGCCTCAAGGAGCTTCAGGT 380 ********** ** ** ** **** ********************* ************* consensus_8352#0 TCTCCTTGATCTCCGCCGCGAAGCCCTCCCGCACCTCGCCGTCGTCCGTCGACCACAGCG 480 consensus_8352#1 TCTCCTTGATGTCCGCCGCGAAGCCATCCCGCACCTCGCCGTCGTCCGTCGACCACAGCG 440 ********** ************** ********************************** consensus_8352#0 CCAGCCAGAACGGCTTCGTGCACTTGTCGTCGATGAATCGGGCCCAGAAGCGGGCGGCGG 540 consensus_8352#1 CAAGGCAAAACGGCTT-------------------------------------------- 456 * ** ** ******** consensus_8352#0 CGCGGAGGCCGGGGTCGGCGGGGAGGAGGAGGAGCGGGGCCGGGAACGCCTCGTCGACGT 600 consensus_8352#1 ------------------------------------------------------------ consensus_8352#0 ACTCGACGATGACAAGGGACTCGCAGACGGCGGCGCGGTGGTCGTCGTCGCCGTGGAGGA 660 consensus_8352#1 ------------------------------------------------------------ consensus_8352#0 GGACGGGGACCTTCTTGTGGATGGGGTTGTGGGTGAGCAGCAGGTCGCTCTTGTTGCGGA 720 consensus_8352#1 ------------------------------------------------------------ consensus_8352#0 GGTCCTCCAGGATGAGCTCGTATGGCACGCCCTTGAGCCGCAGGGCGGCCTCCGCGCGTT 780 consensus_8352#1 ------------------------------------------------------------ consensus_8352#0 GGCTGTACGGGCTGTCGAAGGTGCCGATCACCTTCACCGGCGCCGGCGCCGGCGACGCCA 840 consensus_8352#1 ------------------------------------------------------------ consensus_8352#0 TGGTGGCTGCTCAGCTCGTACTGGATGGTTTGCTGCTGGTTGATTTAATTTGGAGGAGCT 900 consensus_8352#1 ------------------------------------------------------------ consensus_8352#0 GATATTTAGTAGTGATTAGTGAAGCTTCCGTGCATGGGAAGGAAGGAAGGAAGCTTCCTC 960 consensus_8352#1 ------------------------------------------------------------ consensus_8352#0 TAGTTTTTCGTTTTCGAGTAATTTGTTTACGTGATTGCCGATATTATATCTTTAAATTAA 1020 consensus_8352#1 ------------------------------------------------------------ consensus_8352#0 TAGAAAAAAAGCCTTTAC 1038 consensus_8352#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||