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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 979 fasta sequence
[ATGCATGAATTACAAGTAATGTAAGTATGTGTATGAGGGCCAAAGGTAAAAGCAGCTGGCCAGTTGCTATTCTTACAATGGAGGTGCATTATCAACCAAAAACAATTTCTGATAATTCTTTAATATGTCACAAGAAGGAAATAAATCACTAGCTTTGGGCCATTTTAAACATAGCTCTTGGGACATTCTAAACATTTTTCATGATTTCCATTATGTGCAACATATGTAAAACAACTATACGAAATAAACACTAAAATATCTGTTTTTTTTAATTGAGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTCATCCTCTGTAGATGTGGCAATTTTTTGTCTGTCTTTAATGGGAACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTCGAAGGATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGTAATTGTACTAGACCTCTTCCAGGGTTCTCTTAAATTAAGTTGTTGATGTACTCTATGTTCCCTTATCTCAGGCTTATCTGTTTCCGTTACTTTCTCTTTTTGTTGTCGCGTGATTTTCTTTATGCAATTATGCGTTGGACCTCACCAGACAAAGGCCTAGTCATCTAGTGGCCTGTCGAATGAGGTATGCTCACAGGGGCAGAGTATAATTCTGAATCTGATGCATATCCTGCGTGAGCCCTTGTACCTCAAACTAAACTAGCAAGTAAGATTAGCAACTTACGAATGCACCCAATGNGCCATTTTGGTG]
[-] EMBL CB684915 [ATGCATGAATTACAAGTAATGTAAGTATGTGTATGAGGGCCAAAGGTAAAAGCAGCTGGCCAGTTGCTATTCTTACAATGGAGGTGCATTATCAACCAAAAACAATTTCTGATAATTCTTTAATATGTCACAAGAAGGAAATAAATCACTAGCTTTGGGCCATTTTAAACATAGCTCTTGGGACATTCTAAACATTTTTCATGATTTCCATTATGTGCAACATATGTAAAACAACTATACGAAATAAACACTAAAATATCTGTTTTTTTTAATTGAGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTCATCCTCTGTAGATGTGGCAATTTTTTGTCTGTCTTTAATGGGAACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTCGAAGGATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGTAATTGTACTAGACCTCTTCCAGGGTTCTCTTAAATTAAGTTGTTGATGTACTC ]
[+] EMBL CA765880 [ caaggggGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTCATCCTCTGTAGATGTGGCAATTTTTTGTCTGTCTTTAATGGGAACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTCGAAGGATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGTAATTGTACTAGACCTCTTCCAAGGTTCTCTTAAATTAAGTTGTTGATGTACTCTATGTTCCCTTATCTCAGGCTTATCTGTTTCCGTTACTTTCTCTTTTTGTTGTCGCGTGATTTTCTTTATGCAATTATGCGTTGGACCTCACCAGACAAAGGCCTAGTCATCTAGTGGCCTGTCGAATGAGGTATGCTCACAGGGGCAGAGTATAATTCTGAATCTGATGCATATCCTGCGTGAGCCCTTGTACCTCAAACTAAACTAGCAAGTAAGATTAGCAACTTACGAATGCACCCAATGNGCCATTTTGGTG]
consensusID : consensus_8356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence
[ATTATGGTCGATACTCAAATACTCAGTACACTCATGCATGAATTACAAGTAATGTAAGTATGTGTATGAGGGCCAAAGGTAAAAGCAGCTGGCCAGTTGCTATTCTTACAATGGAGGTGCATTATCAACCAAAAACAATTTCTGATAATTCTTTAATATGTCACAAGAAGGAAATAAATCACTAGCTTTGGGCCATTTTAAACATAGCTCTTGGGACATTCTAAACATTTTTCATGATTTCCATTATGTGCAACATATGTAAAACAACTATACGAAATAAACACTAAAATATCTGTTTTTTTTAATTGAGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTCATCCTCTGTAGATGTGGCAATTTTTTGTCTGTCTTTAATGGGAACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTGGAAGGATGGGAAAAACAAAATGTTCATTNCGCCGCCGCCCCCGAAGAGGACGAAGCCTGGTGCTTTCGGCGGTTCCGGCCGCCTCCTCGGCGGCGCCGCTTGCGGCCGCCGGCTGCCGCCGCCGCCGCCTCCTGCAGAGGCTCCATCGGGGAGGGAGGCGGCGCG]
[-] EMBL CB684914 [ATTATGGTCGATACTCAAATACTCAGTACACTCATGCATGAATTACAAGTAATGTAAGTATGTGTATGAGGGCCAAAGGTAAAAGCAGCTGGCCAGTTGCTATTCTTACAATGGAGGTGCATTATCAACCAAAAACAATTTCTGATAATTCTTTAATATGTCACAAGAAGGAAATAAATCACTAGCTTTGGGCCATTTTAAACATAGCTCTTGGGACATTCTAAACATTTTTCATGATTTCCATTATGTGCAACATATGTAAAACAACTATACGAAATAAACACTAAAATATCTGTTTTTTTTAATTGAGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTCATCCTCTGTAGATGTGGCAATTTTTTGTCTGTCTTTAATGGGAACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTGGAAGGATGGGAAAAACAAAATGTTCATTNCGCCGCCGCCCCCGAAGAGGACGAAGCCTGGTGCTTTCGGCGGTTCCGGCCGCCTCCTCGGCGGCGCCGCTTGCGGCCGCCGGCTGCCGCCGCCGCCGCCTCCTGCAGAGGCTCCATCGGGGAGGGAGGCGGCGCG]
consensusID : consensus_8356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[TTAGTGTGGGTTCCACAATTTATCTTTCATGATTCCAAGTCATTACATGGTCAATACTCTTTTAGCATTGAATTTTTCTGATGTTAACATGTTGTTCCTGTGTTAAAAATAGAAGCCATTATGGTCGATACTCAAATACTCAGTACACTCATGCATGAATTACAAGTAATGTAAGTATGTGTATGAGGGCCAAAGGTAAAAGCAGCTGGCCAGTTGCTATTCTTACAATGGAGGTGCATTATCAACCAAAAACAATTTCTGATAATTCTTTAATATGTCACAAGAAGGAAATAAATCACTAGCTTTGGGCCATTTTAAACATAGCTCTTGGGACATTCTAAACATTTTTCATGATTTCCATTATGTGCAACATATGTAAAACAACTATACGAAATAAACACTAAAATATCTGTTTTTTTTAATTGAGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTCATCCTCTGTAGATGTGGCAATTTTTTGTCTGTCTTTAATGGGAACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGGTTTGCCCCTAATGATTAGCTGCTACACTTCTATGACA]
[+] EMBL CF306559 [TTAGTGTGGGTTCCACAATTTATCTTTCATGATTCCAAGTCATTACATGGTCAATACTCTTTTAGCATTGAATTTTTCTGATGTTAACATGTTGTTCCTGTGTTAAAAATAGAAGCCATTATGGTCGATACTCAAATACTCAGTACACTCATGCATGAATTACAAGTAATGTAAGTATGTGTATGAGGGCCAAAGGTAAAAGCAGCTGGCCAGTTGCTATTCTTACAATGGAGGTGCATTATCAACCAAAAACAATTTCTGATAATTCTTTAATATGTCACAAGAAGGAAATAAATCACTAGCTTTGGGCCATTTTAAACATAGCTCTTGGGACATTCTAAACATTTTTCATGATTTCCATTATGTGCAACATATGTAAAACAACTATACGAAATAAACACTAAAATATCTGTTTTTTTTAATTGAGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTCATCCTCTGTAGATGTGGCAATTTTTTGTCTGTCTTTAATGGGAACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGGTTTGCCCCTAATGATTAGCTGCTACACTTCTATGACA]
consensusID : consensus_8356#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence
[GACAAGGGGGGTCATATTTTCGAACATCGCATCCTTACCATGTACTTCAGAAACTAATATGTTCTTTGTGCCCATTCTCTCTTTGTGGTGATGGTATCTGAAATGTTTCCTTTGATGTACCCACATGACGGATTCCCATTTTGTGTATCCTTTTCATGTGTGGTACTTATTTTGTGATATGAAAATTGTTCTGTATTGACACAAGACTGTACTGTGCGAAAAGAGAACAGTGTCATCATGTTTCCTAAATTGGCAATTGGTTCCTTTCTGTAGGATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGTAATTGTACTAGACCTCTTCCAAGGTTCTCTTAAATTAAGTTGTTGATGTACTCTATGTTCCCTTATCTCAGGCTTATCTGTTTCCGTTAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759853 [GACAAGGGGGGTCATATTTTCGAACATCGCATCCTTACCATGTACTTCAGAAACTAATATGTTCTTTGTGCCCATTCTCTCTTTGTGGTGATGGTATCTGAAATGTTTCCTTTGATGTACCCACATGACGGATTCCCATTTTGTGTATCCTTTTCATGTGTGGTACTTATTTTGTGATATGAAAATTGTTCTGTATTGACACAAGACTGTACTGTGCGAAAAGAGAACAGTGTCATCATGTTTCCTAAATTGGCAATTGGTTCCTTTCTGTAGGATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGTAATTGTACTAGACCTCTTCCAAGGTTCTCTTAAATTAAGTTGTTGATGTACTCTATGTTCCCTTATCTCAGGCTTATCTGTTTCCGTTAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8356#1 ------------------------------------------------------------
consensus_8356#2 TTAGTGTGGGTTCCACAATTTATCTTTCATGATTCCAAGTCATTACATGGTCAATACTCT 60
consensus_8356#0 ------------------------------------------------------------
consensus_8356#3 ------------------------------------------------------------
consensus_8356#1 ---------------------------------------------------------ATT 3
consensus_8356#2 TTTAGCATTGAATTTTTCTGATGTTAACATGTTGTTCCTGTGTTAAAAATAGAAGCCATT 120
consensus_8356#0 ------------------------------------------------------------
consensus_8356#3 --------------------------------------------GACAAGGGGGGTCAT- 15
consensus_8356#1 ATGGTCGATACTCAAATACTCAGTACACTCATGCATGAATTACAAGTAATGTAAGTATGT 63
consensus_8356#2 ATGGTCGATACTCAAATACTCAGTACACTCATGCATGAATTACAAGTAATGTAAGTATGT 180
consensus_8356#0 ------------------------------ATGCATGAATTACAAGTAATGTAAGTATGT 30
consensus_8356#3 ATTTTCGAACATCGCATCCTTACCATGTACTTCAGAAACTAATATGTTCTTTGTGCCCAT 75
* * * * * ** * * * *
consensus_8356#1 G---TATGAGGGCCAAAGGTAAAAGCAGCTGGCCAGTTGCTATTCTTACAATGGAGGTGC 120
consensus_8356#2 G---TATGAGGGCCAAAGGTAAAAGCAGCTGGCCAGTTGCTATTCTTACAATGGAGGTGC 237
consensus_8356#0 G---TATGAGGGCCAAAGGTAAAAGCAGCTGGCCAGTTGCTATTCTTACAATGGAGGTGC 87
consensus_8356#3 TCTCTCTTTGTGGTGATGGTATCTGAAATGTTTCCTTTGATGTACCCACA-TGACGGATT 134
* * * * * **** * * * *** * * * *** ** **
consensus_8356#1 ATTATCAACCAAAAACAATTTCTGATAATTCTTTAATATGTCACAAGAAGGAAATAAATC 180
consensus_8356#2 ATTATCAACCAAAAACAATTTCTGATAATTCTTTAATATGTCACAAGAAGGAAATAAATC 297
consensus_8356#0 ATTATCAACCAAAAACAATTTCTGATAATTCTTTAATATGTCACAAGAAGGAAATAAATC 147
consensus_8356#3 CCCATTTTGTGTATCCTTTTCATGTGTGGTACTTATTTTGTGATATGAAAATTGTTCTGT 194
** * * ** ** * *** * *** * * *** *
consensus_8356#1 ACTAGCTTTGGGCCATTTTAAACATAGCTCTTGGGACATTCTAAACATTTTTCATGATTT 240
consensus_8356#2 ACTAGCTTTGGGCCATTTTAAACATAGCTCTTGGGACATTCTAAACATTTTTCATGATTT 357
consensus_8356#0 ACTAGCTTTGGGCCATTTTAAACATAGCTCTTGGGACATTCTAAACATTTTTCATGATTT 207
consensus_8356#3 ATTGACACAAGACTGTACTGTGCGAAAAG---AGAACAGTGTCATCATGTTTCCTAAATT 251
* * * * * * * * * * *** * * * *** **** * * **
consensus_8356#1 CCATTATGTGCAACATATGTAAAACAACTATACGAAATAAACACTAAAATATCTGTTTTT 300
consensus_8356#2 CCATTATGTGCAACATATGTAAAACAACTATACGAAATAAACACTAAAATATCTGTTTTT 417
consensus_8356#0 CCATTATGTGCAACATATGTAAAACAACTATACGAAATAAACACTAAAATATCTGTTTTT 267
consensus_8356#3 GGCAATTGGTTCCTTTCTGTAGGA------TGCGAAAAACAAAATGTTCATTCTGTTCCA 305
** * **** * * ***** * * * * ******
consensus_8356#1 TTTAATTGAGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTC 360
consensus_8356#2 TTTAATTGAGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTC 477
consensus_8356#0 TTTAATTGAGTTGTTACTTAAACTAAAGGCTTTGTTATTTCTGTAGACTCCATTGGAGTC 327
consensus_8356#3 TTTC-CGGAAAAAGGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAAC 364
*** ** * * * * * * ** * * * ** * ** *
consensus_8356#1 ATCCTCTGTAGATGTGGCAATT-TTTTGTCTGTCTTTAATGGGAACAA-ACTATCCGAGT 418
consensus_8356#2 ATCCTCTGTAGATGTGGCAATT-TTTTGTCTGTCTTTAATGGGAACAA-ACTATCCGAGT 535
consensus_8356#0 ATCCTCTGTAGATGTGGCAATT-TTTTGTCTGTCTTTAATGGGAACAA-ACTATCCGAGT 385
consensus_8356#3 CTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGTAATTGTACTAGACCTCT 424
* **** * *** ** * * ** * *** * ** **** * *
consensus_8356#1 TATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGTGGTTGGCTTCTTATTGCTGAAGTG 478
consensus_8356#2 TATATAGAGGAAGCAAACCGAGTTCTCAAACCAAG--GTTTGCC-CCTAATGATTAGCTG 592
consensus_8356#0 TATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGTGGTTGGCTTCTTATTGCTGAAGTG 445
consensus_8356#3 TCCAAGGTTCTCTTAAATTAAGTTGTTGATGTACT--CTATGTTCCCTTATCTCAGGCTT 482
* * * *** **** * * * * * * * * *
consensus_8356#1 AGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATC 538
consensus_8356#2 CTACACTTCTATGACA-------------------------------------------- 608
consensus_8356#0 AGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATC 505
consensus_8356#3 ATCTGTTTCCGTTAAAAAAAAAAAAAAAAAAAAA-------------------------- 516
*
consensus_8356#1 AGCAAGCTTGGGTTTTCCCTTGTTTGGAAGGATGGGAAAAACAAAATGTTCATTNCGCCG 598
consensus_8356#2 ------------------------------------------------------------
consensus_8356#0 AGCAAGCTTGGGTTTTCCCTTGTTTCGAAGGATGCGAAAAACAAAATGTTCATTCTGTTC 565
consensus_8356#3 ------------------------------------------------------------
consensus_8356#1 CCGCCCCCGAAGAGGACGAAGCCTGGTGCTTTCGGCGGTTCCGGCCG-CCTCCTCGGCGG 657
consensus_8356#2 ------------------------------------------------------------
consensus_8356#0 CATTTCCGGAAAAAGGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAA 625
consensus_8356#3 ------------------------------------------------------------
consensus_8356#1 CGCCGCTTG--CGGCCGCCGGCTGCCGCCGCCGCCGCCTCCTGCAGAGGCTCCATCGGGG 715
consensus_8356#2 ------------------------------------------------------------
consensus_8356#0 CCTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGTAATTGTACTAGACCTC 685
consensus_8356#3 ------------------------------------------------------------
consensus_8356#1 AGGGAGGCGGCGCG---------------------------------------------- 729
consensus_8356#2 ------------------------------------------------------------
consensus_8356#0 TTCCAGGGTTCTCTTAAATTAAGTTGTTGATGTACTCTATGTTCCCTTATCTCAGGCTTA 745
consensus_8356#3 ------------------------------------------------------------
consensus_8356#1 ------------------------------------------------------------
consensus_8356#2 ------------------------------------------------------------
consensus_8356#0 TCTGTTTCCGTTACTTTCTCTTTTTGTTGTCGCGTGATTTTCTTTATGCAATTATGCGTT 805
consensus_8356#3 ------------------------------------------------------------
consensus_8356#1 ------------------------------------------------------------
consensus_8356#2 ------------------------------------------------------------
consensus_8356#0 GGACCTCACCAGACAAAGGCCTAGTCATCTAGTGGCCTGTCGAATGAGGTATGCTCACAG 865
consensus_8356#3 ------------------------------------------------------------
consensus_8356#1 ------------------------------------------------------------
consensus_8356#2 ------------------------------------------------------------
consensus_8356#0 GGGCAGAGTATAATTCTGAATCTGATGCATATCCTGCGTGAGCCCTTGTACCTCAAACTA 925
consensus_8356#3 ------------------------------------------------------------
consensus_8356#1 ------------------------------------------------------
consensus_8356#2 ------------------------------------------------------
consensus_8356#0 AACTAGCAAGTAAGATTAGCAACTTACGAATGCACCCAATGNGCCATTTTGGTG 979
consensus_8356#3 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||