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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1547 fasta sequence
[CAAAAGCGTAGCGACACACGAGAAGCCACCAGCCAACGTAGTACGCGCCGAGAGCTGAGGCCATCCACGACACACGAACATGAGCACACTAGTAGACGCGCTGTGCGCTCCCTGCAGCGACACCGCGCTCATCTACGACACCTTCAACGCCTCCGCCGCCGCGAGCTTCCTCTTCGACAATGCCGCCGCCTTCTGCGACGCTGACATCCTCGGCGCCACGGCGACAGGGGAGAAGGAGGCGACGTCGTCGGCCGCGGCCGCGGCCGCGGAAGCCGCCCCGCCGAGGAAGAAGCGGCGGCGGCGCGCGAAGAGCTGCAAGTCGCGGGAGGAGACGGAGACCCAGCGGATGACGCACATCGCCGTGGAGCGCAACCGCCGGCGCCAGATGAACGAGTACCTCGCCATCCTCCGGTCGCTCATGCCGGAGCCCTACGTCCAGAGGGGCGACCAGGCGTCCATTGTGGGAGGCGCAATCGAGTTCGTGAAGGAGCTCGAGCAGCAGCTGCAGTCGCTTGAGGCGCAGAAGCGAACGCTGCTCCCTCACCACAAGGCGAGATGCGACGACGCAACGCCGATGCATAACGCCAGCGGCAGCAACGTCGGGGCCGGCGGCTGCATGGAGCCCACGACGATAACGAGCAACTGCAGCAGCAGCGTCACCGAGGACGCGCCGTCCGCCGACGCGCCCCCGTTCGCGCAGTTCTTCGCGTACCCGCAGTACGTGTGGTGCCACTCGCCGCGCGACTCCACCACCACCACCACCGCGGCGTCTGCGTCGGCGTCGGCTTCGGCGTCGTCGTCGTCGCCGGCCACGGTGGCGGCGGCGCTCCAGTCGGAGCACCGCTCCGGGTTGGCCGACATCGAGGTGAGCCTGGTCGAGACGCACGCCAGCGTCCGTGTCATGTCACCGCGGCGGCCAGGGCAGCTGCTCAAGATGATCGCCGGCCTGCAGGCCCTCCGGCTCACCGTGCTGCACCTCAACGTCACCACGCTGGACTCCCTTGTGCTCTACACCCTCAGCGTCAAGGTGGAGGAAGGATGCAGCCTGACGACGGTGGACGACATCGCGGCGGCGGTGCACCACGTGCTCTGCATCGTCGACGCGGAGGCGGCCGCCTCGGAGCATCTCCTCGCGGCGGGGCAACTGGCCACGACGGCGACGGCGGTGGCGAAGAGAGAACTCGCGACGTACATGTACTGAGCCGCTCCAAGTGCCTTACATGTCGTCGTTTGTGTGGTCGCGTGTACTGTATGCCGCGCTCCCGTTTTTCTCCCCTTTTTAGGCTCGTCACGTTTTTGCTGTGTAGTGGCCCGGCAGGTTAGATCTAGTTCTAGTTGTACTAGTAGATGCAAAATGCTATGTGTCCAGTAGTCCCAGCCTCTCGACGAGGGCGTACTTGTCTGTTTCTCGTTCTGAAAACAGAATGTTGTATTGCTGTACCTGTACAGTATCCTGCCTCGCCTTTCTGTAATAAGAGCGACTAGCGAGTAGCGACATTGGAAGGAACAGTTCGAGATTCGTATTATCCGAACAGGGCCTTATGAGG]
[+] EMBL AK060695 [CAAAAGCGTAGCGACACACGAGAAGCCACCAGCCAACGTAGTACGCGCCGAGAGCTGAGGCCATCCACGACACACGAACATGAGCACACTAGTAGACGCGCTGTGCGCTCCCTGCAGCGACACCGCGCTCATCTACGACACCTTCAACGCCTCCGCCGCCGCGAGCTTCCTCTTCGACAATGCCGCCGCCTTCTGCGACGCTGACATCCTCGGCGCCACGGCGACAGGGGAGAAGGAGGCGACGTCGTCGGCCGCGGCCGCGGCCGCGGAAGCCGCCCCGCCGAGGAAGAAGCGGCGGCGGCGCGCGAAGAGCTGCAAGTCGCGGGAGGAGACGGAGACCCAGCGGATGACGCACATCGCCGTGGAGCGCAACCGCCGGCGCCAGATGAACGAGTACCTCGCCATCCTCCGGTCGCTCATGCCGGAGCCCTACGTCCAGAGGGGCGACCAGGCGTCCATTGTGGGAGGCGCAATCGAGTTCGTGAAGGAGCTCGAGCAGCAGCTGCAGTCGCTTGAGGCGCAGAAGCGAACGCTGCTCCCTCACCACAAGGCGAGATGCGACGACGCAACGCCGATGCATAACGCCAGCGGCAGCAACGTCGGGGCCGGCGGCTGCATGGAGCCCACGACGATAACGAGCAACTGCAGCAGCAGCGTCACCGAGGACGCGCCGTCCGCCGACGCGCCCCCGTTCGCGCAGTTCTTCGCGTACCCGCAGTACGTGTGGTGCCACTCGCCGCGCGACTCCACCACCACCACCACCGCGGCGTCTGCGTCGGCGTCGGCTTCGGCGTCGTCGTCGTCGCCGGCCACGGTGGCGGCGGCGCTCCAGTCGGAGCACCGCTCCGGGTTGGCCGACATCGAGGTGAGCCTGGTCGAGACGCACGCCAGCGTCCGTGTCATGTCACCGCGGCGGCCAGGGCAGCTGCTCAAGATGATCGCCGGCCTGCAGGCCCTCCGGCTCACCGTGCTGCACCTCAACGTCACCACGCTGGACTCCCTTGTGCTCTACACCCTCAGCGTCAAGGTGGAGGAAGGATGCAGCCTGACGACGGTGGACGACATCGCGGCGGCGGTGCACCACGTGCTCTGCATCGTCGACGCGGAGGCGGCCGCCTCGGAGCATCTCCTCGCGGCGGGGCAACTGGCCACGACGGCGACGGCGGTGGCGAAGAGAGAACTCGCGACGTACATGTACTGAGCCGCTCCAAGTGCCTTACATGTCGTCGTTTGTGTGGTCGCGTGTACTGTATGCCGCGCTCCCGTTTTTCTCCCCTTTTTAGGCTCGTCACGTTTTTGCTGTGTAGTGGCCCGGCAGGTTAGATCTAGTTCTAGTTGTACTAGTAGATGCAAAATGCTATGTGTCCAGTAGTCCCAGCCTCTCGACGAGGGCGTACTTGTCTGTTTCTCGTTCTGAAAACAGAATGTTGTATTGCTGTACCTGTACAGTATCCTGCCTCGCCTTTCTGTAATAAGAGCGACTAGCGAGTAGCGACATTGGAAGGAACAGTTCGAGATTCGTATTATCCGAACAGGGCCTTATGAGG]
consensusID : consensus_836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[ATTCTCCTCTGTTACCCATCGTACGTAGACCAACATCCCCGGGGGTATTTTACTATACTAGTAGAGGCTATTGCATGGGTGATCACTGATCAGAATTGCGTCTCGCTGCTGCTGCTGTTGATGCTGCTCCATATCTGCCATGGCCGATTGCTTTTGACCAGAGATTCCATGGCGGAAAGGCCATTGCTTCCCTTGGCCCCTTGGGTGGAGGAAGGGTGCGGCATGGCGACGGTGGACGACATCGCAGCGGCGGTGCACCACGTGCTCTGCATCATCGACGCCGAGGCGGCGTCGCAGATGCTGCTCGCCGGGGAGGCCTCCGGTTAGCGTGGCCACCTAGCAAGATAGGCGCGCGGCGGCGGCCGGTGTAACAAATCTGTAAAGTGTAGCGGATCTCGATCGATCTCTCCCCTCCCGTAGGCGAGTCGGGTGATTTGGGGGTCGGTGGCGTAGGGCAAAAGCCCGTGTAAGTGCAATAACATGCGGCCCGTTGTAATCCTAGCCGGTTTTTTTTTTTTTTGCCGTCGAGTGTGTGCGTTTTGCGGTTTTCTCGGCGGAAGTCGACGTGGAATCCGGGGGAGTGAGACGGTGAAGAGAGGGTTTTTTTATCCTTGCTTGTCCCTCCATGTTGGGCCGACTAGGTACACAGCCTATGGGCTTGAGATTAGCACATGGTCCGGC]
[+] EMBL AK062895 [ATTCTCCTCTGTTACCCATCGTACGTAGACCAACATCCCCGGGGGTATTTTACTATACTAGTAGAGGCTATTGCATGGGTGATCACTGATCAGAATTGCGTCTCGCTGCTGCTGCTGTTGATGCTGCTCCATATCTGCCATGGCCGATTGCTTTTGACCAGAGATTCCATGGCGGAAAGGCCATTGCTTCCCTTGGCCCCTTGGGTGGAGGAAGGGTGCGGCATGGCGACGGTGGACGACATCGCAGCGGCGGTGCACCACGTGCTCTGCATCATCGACGCCGAGGCGGCGTCGCAGATGCTGCTCGCCGGGGAGGCCTCCGGTTAGCGTGGCCACCTAGCAAGATAGGCGCGCGGCGGCGGCCGGTGTAACAAATCTGTAAAGTGTAGCGGATCTCGATCGATCTCTCCCCTCCCGTAGGCGAGTCGGGTGATTTGGGGGTCGGTGGCGTAGGGCAAAAGCCCGTGTAAGTGCAATAACATGCGGCCCGTTGTAATCCTAGCCGGTTTTTTTTTTTTTTGCCGTCGAGTGTGTGCGTTTTGCGGTTTTCTCGGCGGAAGTCGACGTGGAATCCGGGGGAGTGAGACGGTGAAGAGAGGGTTTTTTTATCCTTGCTTGTCCCTCCATGTTGGGCCGACTAGGTACACAGCCTATGGGCTTGAGATTAGCACATGGTCCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_836#0 CAAAAGCGTAGCGACACACGAGAAGCCACCAGCCAACGTAGTACGCGCCGAGAGCTGAGG 60
consensus_836#1 ------------------------------------------------------------
consensus_836#0 CCATCCACGACACACGAACATGAGCACACTAGTAGACGCGCTGTGCGCTCCCTGCAGCGA 120
consensus_836#1 ------------------------------------------------------------
consensus_836#0 CACCGCGCTCATCTACGACACCTTCAACGCCTCCGCCGCCGCGAGCTTCCTCTTCGACAA 180
consensus_836#1 ------------------------------------------------------------
consensus_836#0 TGCCGCCGCCTTCTGCGACGCTGACATCCTCGGCGCCACGGCGACAGGGGAGAAGGAGGC 240
consensus_836#1 ------------------------------------------------------------
consensus_836#0 GACGTCGTCGGCCGCGGCCGCGGCCGCGGAAGCCGCCCCGCCGAGGAAGAAGCGGCGGCG 300
consensus_836#1 ------------------------------------------------------------
consensus_836#0 GCGCGCGAAGAGCTGCAAGTCGCGGGAGGAGACGGAGACCCAGCGGATGACGCACATCGC 360
consensus_836#1 ------------------------------------------------------------
consensus_836#0 CGTGGAGCGCAACCGCCGGCGCCAGATGAACGAGTACCTCGCCATCCTCCGGTCGCTCAT 420
consensus_836#1 ------------------------------------------------------------
consensus_836#0 GCCGGAGCCCTACGTCCAGAGGGGCGACCAGGCGTCCATTGTGGGAGGCGCAATCGAGTT 480
consensus_836#1 ------------------------------------------------------------
consensus_836#0 CGTGAAGGAGCTCGAGCAGCAGCTGCAGTCGCTTGAGGCGCAGAAGCGAACGCTGCTCCC 540
consensus_836#1 ------------------------------------------------------------
consensus_836#0 TCACCACAAGGCGAGATGCGACGACGCAACGCCGATGCATAACGCCAGCGGCAGCAACGT 600
consensus_836#1 ------------------------------------------------------------
consensus_836#0 CGGGGCCGGCGGCTGCATGGAGCCCACGACGATAACGAGCAACTGCAGCAGCAGCGTCAC 660
consensus_836#1 ------------------------------------------------------------
consensus_836#0 CGAGGACGCGCCGTCCGCCGACGCGCCCCCGTTCGCGCAGTTCTTCGCGTACCCGCAGTA 720
consensus_836#1 ------------------------------------------------------------
consensus_836#0 CGTGTGGTGCCACTCGCCGCGCGACTCCACCACCACCACCACCGCGGCGTCTGCGTCGGC 780
consensus_836#1 ------------------------------------------------------------
consensus_836#0 GTCGGCTTCGGCGTCGTCGTCGTCGCCGGCCACGGTGGCGGCGGCGCTCCAGTCGGAGCA 840
consensus_836#1 -----------ATTCTCCTCTGTTACCCATCGTACGTAGACCAACATCCCCG--GGGGTA 47
** * ** ** * * * ** * ** * *
consensus_836#0 CCGCTCCGGGTTGGCCGACATCGAGGTGAGCCTGGTCGAGACGCACGCCAGCGTCCGTGT 900
consensus_836#1 TTTTACTATACTAGTAGAGGCTATTGCATGGGTGATCACTGATCAGAATTGCGTC----- 102
* * * ** * * ** ** ** *****
consensus_836#0 CATGTCACCGCGGCGGCCAGGGCAGCTGCTCAAGATGATCGCCGGCCTGCAGGCCCTCCG 960
consensus_836#1 ----TCGCTGCTGCTGCTGTTGATGCTGCTCCATAT--CTGCCA--------------TG 142
** * ** ** ** * ******* * ** *** *
consensus_836#0 GCTCACCGTGCTGCACCTCAACGTCACCACGCTGGACTCCCTTGTGCTCTACACCCTCAG 1020
consensus_836#1 GCCGATTGCTTTTGAC--CAGAGATTCCATGGCGGAAAGGCCATTGCTTC---CCTTGGC 197
** * * * ** ** * *** * *** * **** ** *
consensus_836#0 CGTCAAGGTGGAGGAAGGATGCAGCCTGACGACGGTGGACGACATCGCGGCGGCGGTGCA 1080
consensus_836#1 CCCTTGGGTGGAGGAAGGGTGCGGCATGGCGACGGTGGACGACATCGCAGCGGCGGTGCA 257
* ************ *** ** ** ******************* ***********
consensus_836#0 CCACGTGCTCTGCATCGTCGACGCGGAGGCGGCCGCCTCGGAGCATCTCCTCGC-GGCGG 1139
consensus_836#1 CCACGTGCTCTGCATCATCGACGCCGAGGCGGCG---TCGCAGATGCTGCTCGCCGGGGA 314
**************** ******* ******** *** ** ** ***** ** *
consensus_836#0 GGCAACTGGCCACGACGGCGACGGCGGTGGCGAAGAGAGAACTCGCGACGTACATGTACT 1199
consensus_836#1 GGCCTCCGGTTAGCGTGGCCACCTAGCAAGATAGGCGCGCGGCGGCGGCCGG--TGTAAC 372
*** * ** * *** ** * * * * * * *** * ****
consensus_836#0 GAGCCGCTCCAAGTGCCTTACATGTCGTCGTTTGTGTGGTCGCGTGTACTGTATGCCGCG 1259
consensus_836#1 AAATCTGTA-AAGTGTAGCGGATCTCGATCGATCTCTCCCCTCCCGTAG-GCGAGTCGGG 430
* * * ***** ** *** * * * * * *** * * ** *
consensus_836#0 CTCCCGTTTTTCTCCCCTTTTTAGGCTCGTCACGTTTTTGCTGTGTAGTGGCCCGGCAGG 1319
consensus_836#1 -TGATTTGGGGGTCGGTGGCGTAGGGCAAAAGCCCGTGTAA-GTGCAATAACATG--CGG 486
* * ** **** * * * *** * * * * **
consensus_836#0 TTAGATCTAGTTCTAGTTGTACTAGTAGATGCAAAATGCTATGTGTCCA-GTAGTCCCAG 1378
consensus_836#1 CCCGTTGTAATCCTAGCCGGTTTTTTTTTTTTTTGCCGTCGAGTGTGTGCGTTTTGCGGT 546
* * ** * **** * * * * * **** ** * *
consensus_836#0 CCTCTCGACGAGGGCGTACTTGTCTGTTTCTCGTTCTGAAAACAGAATGTTGTATTGCTG 1438
consensus_836#1 TTTCTCGGCGGAAGTCGACGTG---GAATCCGG----GGGAGTGAGACGGTGAAGAGAGG 599
***** ** * ** ** * ** * * * * * ** * * *
consensus_836#0 TACCTGTACAGTATCCTGCCTCGCCTTTCTGTAATAAGAGCGACTAGCGAGTAGCGACAT 1498
consensus_836#1 GTTTTTT----TATCCTTGCTTGTCCCTCCATGTTGGGC-CGACTAG-GTACACAGCCTA 653
* * ****** ** * * ** * * * ******* * * * *
consensus_836#0 TGGAAGGAACAGTTCGAGATT--CGTATTATCCGAACAGGGCCTTATGAGG 1547
consensus_836#1 TGG--------GCTTGAGATTAGCACATGGTCCGGC--------------- 681
*** * * ****** * ** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||