These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1153 fasta sequence [CCCTCTCCTCTCTTCTCTCCTTCGCTTCGCCACCGCGTTCGCCATGGCCTTCGTCTCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGGAACCTGTTCCGGAAAACTTCCCTTTTGAAATCCTTGACGAAGAAGGGATGAGTGTGGTTATTCTGAAAAGGGACTACAAAGATGAGAAGATTGAGGTCATTGTCAGCATGCCAAATTTAGAAGGGGGCCCTGAGTTTGACGACGAAGAAGCCGAGGGTGAGGGCAAGAATGCTAGCAAGGATGATGAAGATGAAGAGGAAGACGAGAGCGCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAATGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGC-TGAAGGACTTCGTCCGGCAATGAGAAATTGCCGAGCAA-TTTGGCAGGATTTTTGGTAGCTTAGCCTTTTAGCATACCTGCATATGTAACAAGGATTACTAGAATTATGCGAAGCAATGCAACAACCGGGGAAACTGCCTTCCCTGCAATGTGCGATTTCTGATGCCCAGTAGTCAATCTGAGGCTATTGGCACTTATGATATCAGTGCTTATTTTACTAGCCTTTTACCGTTTCTTGGTGCTGCTTATCTGAATTTTGTGTGGAATTGTGAATTGTGATGGCTGAAATGATATTCTATGTGAAAA] [+] EMBL AK066079 [CCCTCTCCTCTCTTCTCTCCTTCGCTTCGCCACCGCGTTCGCCATGGCCTTCGTCTCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGGAACCTGTTCCGGAAAACTTCCCTTTTGAAATCCTTGACGAAGAAGGGATGAGTGTGGTTATTCTGAAAAGGGACTACAAAGATGAGAAGATTGAGGTCATTGTCAGCATGCCAAATTTAGAAGGGGGCCCTGAGTTTGACGACGAAGAAGCCGAGGGTGAGGGCAAGAATGCTAGCAAGGATGATGAAGATGAAGAGGAAGACGAGAGCGCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAATGCAGCCACAGAAGGAGATGAGAAATTCACTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGC TGAAGGACTTCGTCCGGCAATGAGAAATTGCCGAGCAA TTTGGCAGGATTTTTGGTAGCTTAGCCTTTTAGCATACCTGCATATGTAACAAGGATTACTAGAATTATGCGAAGCAATGCAACAACCGGGGAAACTGCCTTCCCTGCAATGTGCGATTTCTGATGCCCAGTAGTCAATCTGAGGCTATTGGCACTTATGATATCAGTGCTTATTTTACTAGCCTTTTACCGTTTCTTGGTGCTGCTTATCTGAATTTTGTGTGGAATTGTGAATTGTGATGGCTGAAATGATATTCTATGTGAAAA] [+] EMBL AK104561 [ CCTCTCCTCTCTTCTCTCCTTCGCTTCGCCACCGCGTTCGCCATGGCCTTCGTCTCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGGAACCTGTTCCGGAAAACTTCCCTTTTGAAATCCTTGACGAAGAAGGGATGAGTGTGGTTATTCTGAAAAGGGACTACAAAGATGAGAAGATTGAGGTCATTGTCAGCATGCCAAATTTAGAAGGGGGCCCTGAGTTTGACGACGAAGAAGCCGAGGGTGAGGGCAAGAATGCTAGCAAGGATGATGAAGATGAAGAGGAAGACGAGAGCGCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAATGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGC TGAAGGACTTCGTCCGGCAATGAGAAATTGCCGAGCAA TTTGGCAGGATTTTTGGTAGCTTAGCCTTTTAGCATACCTGCATATGTAACAAGGATTACTAGAATTATGCGAAGCAATGCAACAACCGGGGAAACTGCCTTCCCTGCAATGTGCGATTTCTGATGCCCAGTAGTCAATCTGAGGCTATTGGCACTTATGATATCAGTGCTTATTTTACTAGCCTTTTACCGTTTCTT ] [+] EMBL AK104721 [ CCACCGCGTTCGCCATGGCCTTCGTCTCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGGAACCTGTTCCGGAAAACTTCCCTTTTGAAATCCTTGACGAAGAAGGGATGAGTGTGGTTATTCTGAAAAGGGACTACAAAGATGAGAAGATTGAGGTCATTGTCAGCATGCCAAATTTAGAAGGGGGCCCTGAGTTTGACGACGAAGAAGCCGAGGGTGAGGGCAAGAATGCTAGCAAGGATGATGAAGATGAAGAGGAAGACGAGAGCGCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAATGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGC TGAAGGACTTCGTCCGGCAATGAGAAATTGCCGAGCAA TTTGGCAGGATTTTTGGTAGCTTAGCCTTTTAGCATACCTGCATATGTAACAAGGATTACTAGAATTATGCGAAGCAATGCAACAACCGGGGAAACTGCCTTCCCTGCAATGTGCGATTTCTGATGCCCAGTAGTCAATCTGAGGCTATTGGCACTTATGATATCAG ] [+] EMBL AU066282 [ AAGGATGATGAAGATGAAGAGGAAGACGAGAGCNCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAATGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGCTTGAAGGACTTCGTCCGGCAATTAGNAATTTCCGAGCAATTTTGGCAGGATTTTTNGTAGCTT ] [+] EMBL AU058062 [ CGGGTGGATGACCAAGC TGAAGGACTTCGTCCGGCAATGAGAAATTGCCGAGCAA TTTGGCAGGATTTTTGGTAGCTTAGCCTTTTAGCATACCTGCATATGTAACAAGGATTACTAGAATTATGCGAAGAAGTGCAACAACCGGGGAAACTGCCTTCCCTGCAATGTGCGATTTCTGATGCCCAGTAGTCAATCTGAGGCTATTGGCACTTATGATATCAGTGCTTATTTTACTAaaaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||