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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1116 fasta sequence
[CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACCCGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAGATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAGGTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTGTTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAACTCAATTTTCACAAGGGTACTATATATATACTTTAG]
[+] EMBL AK059753 [CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACCCGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAGATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAGGTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTGTTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAACTCAATTTTCACAAGGGTACTATATATATACTTTAG]
[+] EMBL AU070505 [ GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAGATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAGGTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTANCAGTTTGTTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAANGTCTTTCAAGGAGTGAACCATGGNTTCGCTTGCAagg ]
[+] EMBL AU097004 [ TGCAGGTATAACGCCAGCACCCCTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTACAACTCAATTTTCAC ]
consensusID : consensus_8366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[GTTTACCAGTTTGNTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCNCGTTCNCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU032123 [GTTTACCAGTTTGNTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGAGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAATCATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCNCGTTCNCGATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8366#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAAGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGTTAGTNCATNCCTGCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGATATATTGTGGATTCATTTATTACTAACCATTAATTAATCTTGAATTCTTGCTGTTGCATGTNAGTGGTTGCGTGGTTGTTAATTGTGGGTCTCTACTTC]
[+] EMBL AU095540 [GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAAGCCGGCGTGGTCGTCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCATCCTCTTGGCCACCGACATCTTCGGTTAGTNCATNCCTGCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGATATATTGTGGATTCATTTATTACTAACCATTAATTAATCTTGAATTCTTGCTGTTGCATGTNAGTGGTTGCGTGGTTGTTAATTGTGGGTCTCTACTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8366#0 CCTCATATGTATCGTCAAAACTCGATAGTTGGAAAACCATGGCACCAGCGTTGCTCTACC 60
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 CGACCATCCTCTTCCTCGCAGCGGCCGCCGTCGGCGCCGCCGCTCCGCCGCACTCGCAGT 120
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 GTCTCGACAACCCGCCGGACCTGACGACGGCCGGTGGCGGCGGCGAGGCCGGCGTGGTCG 180
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 TCCACGATCTTGGAGGATTCGAGGCCTACGTCACCGGCGCCGTCCATTCCAGGCGGACCA 240
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 TCCTCTTGGCCACCGACATCTTCGGATTCGAAGCGCCATTGCTGAGGAAAATAGCTGATA 300
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 AAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACA 360
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 CATTTGACCAGAACCGTACAGAATGGCTCAGTGCTCATTCTCCGGTAAAAGCAGCTGAAG 420
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 ATGCTAAACCAATCTTTGCTGCTCTAAGCAAGGAAGGGAAATCTATTGTTGGAGTTGGAG 480
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 GTTACTGTTGGGGCGGGAAGTTCGCAGTGGAGGTAGCAAAAACTAACGAGGTTGAAGCAA 540
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 TTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCA 600
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 TTGAGATCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTG 660
consensus_8366#1 -----------------------------------------------GTTTACCAGTTTG 13
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 TTCATGCCTTGCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAG 720
consensus_8366#1 NTCATGCCTTNCGTCAAAGAACTGATCAGATTGATTATTTTGCCAAGGTCTTTCAAGGAG 73
consensus_8366#2 -----GCCGCTCCGCCGCACTCGCAGTGTCTCGACAACCC-GCCG-GACCTGACGACGGC 53
*** * * * * * ** * *** * ** * * *
consensus_8366#0 TGAACCATGGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTT-CGAGGTCAAAAAAGCT 779
consensus_8366#1 TGAACCATTGCTTCGCTTGCAGGTATAACGCCAGCAACCCTTTTCGAGGTCAAAAAAGCT 133
consensus_8366#2 CGG-TGGCGGCGGCGAA-GCCGGCGTG--GTCGTCCACGATCTTGGAGGATTCGAGGCCT 109
* ** ** ** ** * * * * ** * * **** * **
consensus_8366#0 GAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAA-ATGAAGATTGCT 838
consensus_8366#1 GAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAA-ATGAAGATTGCT 192
consensus_8366#2 ACGTCACCGGCGCCGTCCATTCCAGGCGGAC----CATCCTCTTGGCCACCGACATCTTC 165
* * * *** ** * * * * ** * **** * * **
consensus_8366#0 AATTAATC-ATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTC 897
consensus_8366#1 AATTAATC-ATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCNCGTTCNC 251
consensus_8366#2 GGTTAGTNCATNCCTGCCTGANCTGCCAGCTTATCTGTCTTTGAAATATTCTTTGATGAT 225
*** * ** * * ** * * **** * * * * * *
consensus_8366#0 GATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATT 957
consensus_8366#1 GATATAAAAGTTTGCATATCAAGCAGCCATGCATTTGATGTACACTATTTTCTTTAAATT 311
consensus_8366#2 ATATTGTGGATTCATTTATTAC-TAACCAT-TAATTAATCTTGAATTCTTGCTGTTGCAT 283
* ** *** * * **** * ** ** * * * ** ** * *
consensus_8366#0 ATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTATCTATAAATAAT 1017
consensus_8366#1 ATATGGAGTGAATTAATAGTAAAAAAAAAAAAAAAAAAAAAA------------------ 353
consensus_8366#2 GTNAGTGGTTGCGTGGTTGTTAATTGTGGGTCTCTACTTC-------------------- 323
* * ** * * **
consensus_8366#0 TATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAAATTACATGTGGATGTA 1077
consensus_8366#1 ------------------------------------------------------------
consensus_8366#2 ------------------------------------------------------------
consensus_8366#0 CAACTCAATTTTCACAAGGGTACTATATATATACTTTAG 1116
consensus_8366#1 ---------------------------------------
consensus_8366#2 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||