cluster # 8367

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8367 cluster # 8367 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8367#0 length = 978 sequences # 4

consensus_8367#1 length = 86 sequences # 1

consensusID : consensus_8367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 978
fasta sequence

                              [ACACGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGCGGCGATGGCGAGCGGCGGCGGCGACGCGAGGAGGAGGAAGGAGGAAGGGGAGGAGGACGGGTTCTCGTCGGACGGCGGGGACACCACCGACGCTGAGTCGTCGGACGAGAGGGCGGGGGCGGGGGCGGGGAGGAGGGCGGTGCCGGGCGCGAACCCCATCCTGAGCCGCCTCGCGGTGTCGCGGAACCCGAGCCCGCTCGCGGCGGCCACCGCGGCGCCCGGGGTCTGCCTCCTGCGGTTCGCGTGGGAGTCCGCCGCTGGGTCCCTCGTCGGCGCCGTCGTCGGATATGGAAAAGGTTTGGTCACCACTAAAGGGTTTAAAGGCTCGTTTGCTGATGCTGCATCTTCTGCTAAGATATTTGCTGTTCTTGCTGGTGTTCAAAGTTTGGTTGCCTGCACTTTGAGACAACTACGTGGGAAAGATGATGTTCTCAATGCTGGAATTGCAGGCTGTTGCACTGGCCTTGCCCTGAGTTTTCCAGGTGCACCACAAACAATGATTCAGAGCTGCCTGACCTTCGGAACTTTCTCATACATCATAGAGATGCTCAATAAACAGGAACCTGCACTTGCTCGTCCATCTATCACTGGCACGAAGGATCTCAAGGCTGGACACAGAGTTCTTCCTCCCTTCACGCTCCCTCTTCCGCAAGAGGCAATGGAGGGTTTTTCCTCGTTTCAAAACTTTTTGTCGAAGTTCCAAGGGAAGTGAACCAAGTGAATAACCTCAAGAGGGATGGTGGGTAGCTTCACCTCTTTCCTCCGTTGGATTTTGTCCGTGTAAATGCCTCGTCTTGAGTTTCTCTTTTGTTCCACGAGTGTAATGTTCTAGGGAGTGACGGATTATGTGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTAAAAAAAAAGTTAATTTGC]

[+] EMBL AK101966             [ACACGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGCGGCGATGGCGAGCGGCGGCGGCGACGCGAGGAGGAGGAAGGAGGAAGGGGAGGAGGACGGGTTCTCGTCGGACGGCGGGGACACCACCGACGCTGAGTCGTCGGACGAGAGGGCGGGGGCGGGGGCGGGGAGGAGGGCGGTGCCGGGCGCGAACCCCATCCTGAGCCGCCTCGCGGTGTCGCGGAACCCGAGCCCGCTCGCGGCGGCCACCGCGGCGCCCGGGGTCTGCCTCCTGCGGTTCGCGTGGGAGTCCGCCGCTGGGTCCCTCGTCGGCGCCGTCGTCGGATATGGAAAAGGTTTGGTCACCACTAAAGGGTTTAAAGGCTCGTTTGCTGATGCTGCATCTTCTGCTAAGATATTTGCTGTTCTTGCTGGTGTTCAAAGTTTGGTTGCCTGCACTTTGAGACAACTACGTGGGAAAGATGATGTTCTCAATGCTGGAATTGCAGGCTGTTGCACTGGCCTTGCCCTGAGTTTTCCAGGTGCACCACAAACAATGATTCAGAGCTGCCTGACCTTCGGAACTTTCTCATACATCATAGAGATGCTCAATAAACAGGAACCTGCACTTGCTCGTCCATCTATCACTGGCACGAAGGATCTCAAGGCTGGACACAGAGTTCTTCCTCCCTTCACGCTCCCTCTTCCGCAAGAGGCAATGGAGGGTTTTTCCTCGTTTCAAAACTTTTTGTCGAAGTTCCAAGGGAAGTGAACCAAGTGAATAACCTCAAGAGGGATGGTGGGTAGCTTCACCTCTTTCCTCCGTTGGATTTTGTCCGTGTAAATGCCTCGTCTTGAGTTTCTCTTTTGTTCCACGAGTGTAATGTTCTAGGGAGTGACGGATTATGTGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTTCAGCTAGTGTTAATTTGC]
[+] EMBL CB000245             [                                                                                                                                                                                                                                                                                                                                              CGGATATGGAAAAGGTTTGGTCACCACTAAACGGTTTAAAGGCTCGTTTGCTGATGCTGCATCTTCTGCTAAGATATTTGCTGTTCTTGCTGGTGTTCAAAGTTTGGTTGCCTGCACTTTGAGACAACTACGTGGGAAAGATGATGTTCTCAATGCTGGAATTGCAGGCTGTTGCACTGGCCTTGCCCTGAGTTTTCCAGGTGCACCACAAACAATGATTCAGAGCTGCCTGACCTTCGGAACTTTCTCATACATCATAGAGATGCTCAATAAACAGGAACCTGCACTTGCTCGTCCATCTATCACTGGCACGAAGGATCTCAAGGCTGGACACAGAGTTCTTCCTCCCTTCACGCTCCCTCTTCCGCAAGAGGCAATGGAGGGTTTTTCCTCGTTTCAAAACTTTTTGTCGAAGTTCCAAGGGAAGTGAACCAAGTGAATAACCTCAAGAGGGATGGTGGGTAGCTTCACCTCTTTCCTCCGTTGGATTTTGTCCGTGTAAATGCCTCGTCTTGAGTTTCTCTTTTGTTCCACGAGTGTAATGTTCTAGGGAGTGACGGATTATGTGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCAAAAAAAAAAaaaaa     ]
[+] EMBL CA753142             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGACAACTACGTGGGAAAGATGATGTTCTCAATGCTGGAGTTGCAGGCTGTTGCACTGGCCTTGCCCTGAGTTTTCCAGGTGCACCACAAACAATGATTCAGAGCTGCCTGACCTTCGGAACTTTCTCATACATCATAGAGATGCTCAATAAACAGGAACCTGCACTTGCTCGTCCATCTATCACTGGCACGAAGGATCTCAAGGCTGGACACAGAGTTCTTCCTCCCTTCACGCTCCCTCTTCCGCAAGAGGCAATGGAGGGTTTTTCCTCGTTTCAAAACTTTTTGTCGAAGTTCCAAGGGAAGTGAACCAAGTGAATAACCTCAAGAGGGATGGTGGGTAGCTTCACCTCTTTCCTCCGTTGGATTTTGTCCGTGTAAATGCCTCGTCTTGAGTTTCTCTTTTGTTCCACGAGTGTAATGTTCTAGGGAGTGACGGATTATGTGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTAAAAAAAAA          ]
[+] EMBL AU166258             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGAGTTCTTCCTCCCTTCACGCTCCCTCTTCCGCAAGAGGCAATGGAGGGTTTTTCCTCGTTTCAAAACTTTTTGTCGAAGTTCCAAGGGAAGTGAACCAAGTGAATAACCTCAAGAGGGATGGTGGGTAGCTTCACCTCTTTCCTCCGTTGGATTTTGTCCGTGTAAATGCCTCGTCTTGAGTTTCTCTTTTGTTCCACGAGTGTAATGTTCTAGGGAGTGACGGATTATGTGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTAAAAAAA            ]




>consensus_8367#0
ACACGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGCGGCGATGG
CGAGCGGCGGCGGCGACGCGAGGAGGAGGAAGGAGGAAGGGGAGGAGGACGGGTTCTCGT
CGGACGGCGGGGACACCACCGACGCTGAGTCGTCGGACGAGAGGGCGGGGGCGGGGGCGG
GGAGGAGGGCGGTGCCGGGCGCGAACCCCATCCTGAGCCGCCTCGCGGTGTCGCGGAACC
CGAGCCCGCTCGCGGCGGCCACCGCGGCGCCCGGGGTCTGCCTCCTGCGGTTCGCGTGGG
AGTCCGCCGCTGGGTCCCTCGTCGGCGCCGTCGTCGGATATGGAAAAGGTTTGGTCACCA
CTAAAGGGTTTAAAGGCTCGTTTGCTGATGCTGCATCTTCTGCTAAGATATTTGCTGTTC
TTGCTGGTGTTCAAAGTTTGGTTGCCTGCACTTTGAGACAACTACGTGGGAAAGATGATG
TTCTCAATGCTGGAATTGCAGGCTGTTGCACTGGCCTTGCCCTGAGTTTTCCAGGTGCAC
CACAAACAATGATTCAGAGCTGCCTGACCTTCGGAACTTTCTCATACATCATAGAGATGC
TCAATAAACAGGAACCTGCACTTGCTCGTCCATCTATCACTGGCACGAAGGATCTCAAGG
CTGGACACAGAGTTCTTCCTCCCTTCACGCTCCCTCTTCCGCAAGAGGCAATGGAGGGTT
TTTCCTCGTTTCAAAACTTTTTGTCGAAGTTCCAAGGGAAGTGAACCAAGTGAATAACCT
CAAGAGGGATGGTGGGTAGCTTCACCTCTTTCCTCCGTTGGATTTTGTCCGTGTAAATGC
CTCGTCTTGAGTTTCTCTTTTGTTCCACGAGTGTAATGTTCTAGGGAGTGACGGATTATG
TGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTA
AAAAAAAAGTTAATTTGC

consensusID : consensus_8367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 86
fasta sequence

                              [GTGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTTCAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF313207             [GTGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTTCAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8367#1
GTGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCT
TCAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8367#0      ACACGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGCGGCGATGG 60
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      CGAGCGGCGGCGGCGACGCGAGGAGGAGGAAGGAGGAAGGGGAGGAGGACGGGTTCTCGT 120
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      CGGACGGCGGGGACACCACCGACGCTGAGTCGTCGGACGAGAGGGCGGGGGCGGGGGCGG 180
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      GGAGGAGGGCGGTGCCGGGCGCGAACCCCATCCTGAGCCGCCTCGCGGTGTCGCGGAACC 240
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      CGAGCCCGCTCGCGGCGGCCACCGCGGCGCCCGGGGTCTGCCTCCTGCGGTTCGCGTGGG 300
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      AGTCCGCCGCTGGGTCCCTCGTCGGCGCCGTCGTCGGATATGGAAAAGGTTTGGTCACCA 360
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      CTAAAGGGTTTAAAGGCTCGTTTGCTGATGCTGCATCTTCTGCTAAGATATTTGCTGTTC 420
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      TTGCTGGTGTTCAAAGTTTGGTTGCCTGCACTTTGAGACAACTACGTGGGAAAGATGATG 480
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      TTCTCAATGCTGGAATTGCAGGCTGTTGCACTGGCCTTGCCCTGAGTTTTCCAGGTGCAC 540
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      CACAAACAATGATTCAGAGCTGCCTGACCTTCGGAACTTTCTCATACATCATAGAGATGC 600
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      TCAATAAACAGGAACCTGCACTTGCTCGTCCATCTATCACTGGCACGAAGGATCTCAAGG 660
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      CTGGACACAGAGTTCTTCCTCCCTTCACGCTCCCTCTTCCGCAAGAGGCAATGGAGGGTT 720
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      TTTCCTCGTTTCAAAACTTTTTGTCGAAGTTCCAAGGGAAGTGAACCAAGTGAATAACCT 780
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      CAAGAGGGATGGTGGGTAGCTTCACCTCTTTCCTCCGTTGGATTTTGTCCGTGTAAATGC 840
consensus_8367#1      ------------------------------------------------------------
                                                                                  

consensus_8367#0      CTCGTCTTGAGTTTCTCTTTTGTTCCACGAGTGTAATGTTCTAGGGAGTGACGGATTATG 900
consensus_8367#1      -----------------------------------------------------------G 1
                                                                                 *

consensus_8367#0      TGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTA 960
consensus_8367#1      TGAATGTTGATGTCATTCTTACTCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTT 61
                      *********************************************************** 

consensus_8367#0      AAAAAAAAGTTAATTTGC------- 978
consensus_8367#1      CAAAAAAAAAAAAAAAAAAAAAAAA 86
                       *******   **