|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1651 fasta sequence
[AATCCGAGGAGGCCCTCGGGCTCGGCGCGGCGAATAATTTAGGAAATTGATTATTAATAAGGCGAGCGGCGAGCGGCGATGTCGTCAGCCGCCGTGATGCCGACGCCGAGCATGAACTCCTCATCCGCCGGCGCAGCGGCCGCGGCGGCGGCGGCAGAGGGAGGTGGCGGCGAGGACGAGCGGCGGGCGCGGGCGCTGTCGTCGTCGTCGTCGTCGCTGCGGCAGCGCGCGATGAGCGCGTCGTCGAAGCTGCTCCGGACGTCGCTGAGCAGGAGCAGCAAGGGGGCGGCGGCGCGGCAGCGGAGCAGCAAGGTGATGTCGGTGTCGATCGAGGACGTGCGCGACGCGGAGGAGATGAAGTCGGTGGACGCGTTCCGGCAGACGCTGGTGCTGGAGGAGCTCCTCCCGGCGCGCCACGACGACTACCACATGATGCTCCGCTTCCTCCGCGCCCGCAAGTTCGACATCGACAAGAGCAAGCAGATGTGGAGCGACATGCTGCAATGGCGCAAGGAGTTCGGATCTGACACCATCCTCGACGACTTCCAGTTCGAGGAGATGGACCAGGTGCTCGAGCACTACCCGCAGGGCCACCATGGCGTCGACCGCGAGGGCCGCCCCGTTTACATCGAGAAGCTCGGCGCGATCGACACCGCCAAGCTCCTCCAGGTCACCAGCATGGACCGGTACGTCAAGTACCATGTCCGCGAGTTCGAGCGCGCCTTCGCCGTCAAGTTGCCCCGCCTGCTCCATCGCCGCCAAGCGCCATGTCGACCAGAGCACCACCATCCTCGACGTCTCGGGCGTTGGGTACCAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGACTCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTCTGGAACACCGTCAAGTCCTTCCTCGATCCCAAGACCACAGCCAAGATCCATGTCCTAGGCAACAAGTACCAGAGCAAGCTGCTGGAAGTGATTGATCCCAGCGAATTGCCTGAGTTCCTTGGTGGCACTTGCACCTGCGAAGGCGGCTGCATGCGCTCCGACAAAGGGCCATGGAAAGATCCTGAAATCATAAAGATGGTCCAATGTGGCATGGGAAGATGTGGATTTAATAGCTCGGGTCATACTGAGGCTGATGAGAAGATGATCACTGAGGATGACATAGTGGCAATTCCCAAGAAGCAAGAATCAATTCGCCGTGATTCCGTTGATTCACCCAAGATCCCACGCGAAAAGATTGAACATCCGCAGATGTCACCACTCCATGAGATGTCAACTTCAGAAAGCAAGGCTCCTCCTGGCCAAGAGGGAAGCTCTTCCCGATACGACGATCTGTTCCCCATGCCGGACAAGAACATGGACTTCAACTGGAACGGCGAAGTCAGCGCCGAGAAGCTCGCACTCGCACGAGACATGTACGCGTCGCTGCCGGACGCGTACAAGCACGGCGACGCCGGGGACCGGCAGGTGGTGACGGGGTTCATGGCGTTCGTGATGGGGGTGGTGGCGATGTTCCGGGTGGGGAAGATCGCGCCGAAGCGCGCCATGGACGCGGCGATGGGCATCGCGACGATGGAGGCGATGGCCAAGAACCG]
[+] EMBL AK072646 [AATCCGAGGAGGCCCTCGGGCTCGGCGCGGCGAATAATTTAGGAAATTGATTATTAATAAGGCGAGCGGCGAGCGGCGATGTCGTCAGCCGCCGTGATGCCGACGCCGAGCATGAACTCCTCATCCGCCGGCGCAGCGGCCGCGGCGGCGGCGGCAGAGGGAGGTGGCGGCGAGGACGAGCGGCGGGCGCGGGCGCTGTCGTCGTCGTCGTCGTCGCTGCGGCAGCGCGCGATGAGCGCGTCGTCGAAGCTGCTCCGGACGTCGCTGAGCAGGAGCAGCAAGGGGGCGGCGGCGCGGCAGCGGAGCAGCAAGGTGATGTCGGTGTCGATCGAGGACGTGCGCGACGCGGAGGAGATGAAGTCGGTGGACGCGTTCCGGCAGACGCTGGTGCTGGAGGAGCTCCTCCCGGCGCGCCACGACGACTACCACATGATGCTCCGCTTCCTCCGCGCCCGCAAGTTCGACATCGACAAGAGCAAGCAGATGTGGAGCGACATGCTGCAATGGCGCAAGGAGTTCGGATCTGACACCATCCTCGACGACTTCCAGTTCGAGGAGATGGACCAGGTGCTCGAGCACTACCCGCAGGGCCACCATGGCGTCGACCGCGAGGGCCGCCCCGTTTACATCGAGAAGCTCGGCGCGATCGACACCGCCAAGCTCCTCCAGGTCACCAGCATGGACCGGTACGTCAAGTACCATGTCCGCGAGTTCGAGCGCGCCTTCGCCGTCAAGTTGCCCCGCCTGCTCCATCGCCGCCAAGCGCCATGTCGACCAGAGCACCACCATCCTCGACGTCTCGGGCGTTGGGTACCAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGACTCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTCTGGAACACCGTCAAGTCCTTCCTCGATCCCAAGACCACAGCCAAGATCCATGTCCTAGGCAACAAGTACCAGAGCAAGCTGCTGGAAGTGATTGATCCCAGCGAATTGCCTGAGTTCCTTGGTGGCACTTGCACCTGCGAAGGCGGCTGCATGCGCTCCGACAAAGGGCCATGGAAAGATCCTGAAATCATAAAGATGGTCCAATGTGGCATGGGAAGATGTGGATTTAATAGCTCGGGTCATACTGAGGCTGATGAGAAGATGATCACTGAGGATGACATAGTGGCAATTCCCAAGAAGCAAGAATCAATTCGCCGTGATTCCGTTGATTCACCCAAGATCCCACGCGAAAAGATTGAACATCCGCAGATGTCACCACTCCATGAGATGTCAACTTCAGAAAGCAAGGCTCCTCCTGGCCAAGAGGGAAGCTCTTCCCGATACGACGATCTGTTCCCCATGCCGGACAAGAACATGGACTTCAACTGGAACGGCGAAGTCAGCGCCGAGAAGCTCGCACTCGCACGAGACATGTACGCGTCGCTGCCGGACGCGTACAAGCACGGCGACGCCGGGGACCGGCAGGTGGTGACGGGGTTCATGGCGTTCGTGATGGGGGTGGTGGCGATGTTCCGGGTGGGGAAGATCGCGCCGAAGCGCGCCATGGACGCGGCGATGGGCATCGCGACGATGGAGGCGATGGCCAAGAACCG]
[+] EMBL AK100898 [AATCCGAGGAGGCCCTCGGGCTCGGCGCGGCGAATAATTTAGGAAATTGATTATTAATAAGGCGAGCGGCGAGCGGCGATGTCGTCAGCCGCCGTGATGCCGACGCCGAGCATGAACTCCTCATCCGCCGGCGCAGCGGCCGCGGCGGCGGCGGCAGAGGGAGGTGGCGGCGAGGACGAGCGGCGGGCGCGGGCGCTGTCGTCGTCGTCGTCGTCGCTGCGGCAGCGCGCGATGAGCGCGTCGTCGAAGCTGCTCCGGACGTCGCTGAGCAGGAGCAGCAAGGGGGCGGCGGCGCGGCAGCGGAGCAGCAAGGTGATGTCGGTGTCGATCGAGGACGTGCGCGACGCGGAGGAGATGAAGTCGGTGGACGCGTTCCGGCAGACGCTGGTGCTGGAGGAGCTCCTCCCGGCGCGCCACGACGACTACCACATGATGCTCCGCTTCCTCCGCGCCCGCAAGTTCGACATCGACAAGAGCAAGCAGATGTGGAGCGACATGCTGCAATGGCGCAAGGAGTTCGGATCTGACACCATCCTCGACGACTTCCAGTTCGAGGAGATGGACCAGGTGCTCGAGCACTACCCGCAGGGCCACCATGGCGTCGACCGCGACGGCCGCCCCGTCTACATCGAGAAGCTCGGCGCGATCGACACCGCCAAGCTCCTCCAGGTCACCAGCATGGACCGCTACGTCAAGTACCATGTCCGCGAGTTCGAGCGCGCCTTCGCCGTCAAGTT CCCCGCCTGCTCCATCGCCGCCAAGCGCCATGTCGACCAGAGCACCACCATCCTCGACGTCTCCGGCGTTGGGTA CAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGACTCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTCTGGAACACCGTCAAGTCCTTCCTCGATCCCAAGACCACAGCCAAGATCCATGTCCTAGGCAACAAGTACCAGAGCAAGCTGCTGGAAGTGATTGATCCCAGCGAATTGCCTGAGTTCCTTGGTGGCACTTGCACCTGCGAAGGCGGCTGCATGCGCTCCGACAAAGGGCCATGGAAAGATCCTGAAATCATAAAGATGGTCCAATGTGGCATGGGAAGATGTGGATTTAATAGCTCGGGTCATACTGAGGCTGATGAGAAGATGATCACTGAGGATGACATAGTGGCAATTCCCAAGAAGCAAGAATCAATTCGCCGTGATTCCGTTGATTCACCCAAGATCCCACGCGAAAAGATTGAACATCCGCAGATGTCACCACTCCATGAGATGTCAACTTCAGAAAGCAAGGCTCCTCCTGGCCAAGAGGGAAGCTCTTCCCGATACGACGATCTGTTCCCCATGCCGGACAAGAACATGGACTTCAACTGGAACGGCGAAGTCAGCGCCGAGAAGCTCGCACTCGCACGAGACATGTACGCGTCGCTGCCGGACGCGTACAAGCACGGCGACGCCGGGGACCGGCAGGTGGTGACGGGGTTCATGGCGTTCGTGATGGGGGTGGTGGCGATGTTCCGGGTGGGGAAGATCGCGCCGAAGCGCGCCATGGACGCGGCGATGGGCATCGCGACGATGGAGGCGATGGCCAAGAACCG]
[+] EMBL BE230441 [ gcacaagCGTTGATTCACCCAAGATCCCACGCGAAAAGATTGAACATCCGCAGATGTCACCACTCCATGAGATGTCAACTTCAGAAAGCAAGGCTCCTCCTGGCCAAGAGGGAAGCTCTTCCCGATACGACGATCTGTTCCCCATGCCGGACAAGAACATGGACTTCAACTGGAACGGCGAAGTCAGCGCCGAGAAGCTCGCACTCGCACGAGACATGTACGCGTCGCTGCCGGACGCGTACAAGCACGGCGACGCCGGGGACCGGCAGGTGGTGACGGG ]
[+] EMBL C72601 [ CACCACTCCATGAGATGTCAACTTCAGAAAGCAAGGCTCCTCCTGGCCAAGAGGGAAGCTCTTCCCGATACGACGATCTGTTCCCCATGCCGGACAAGAACATGGACTTCAACTGGAACGGCGAAGTCAGCGCCGAGAAGCTCGCACTCGCACGAGACATGTACGCGTCGCTGCCGGACGCGTACAAGCACGGCGACGCGGGAGANCNNAAGGTGGTGACGGGGTTCATNGCGTTCGTGATGGGGGTGGTGGCGATGTTCCGGGTGG ]
consensusID : consensus_8371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[GGCTTTCNTGATTGGGGTTGTTGCCGATGTTCCGGGTTTGGGGAAAATCCCCGAAGCGCGCCATGGACGCGGCGATGGGCATCGCGACGATGGAGCCGATGGCCAAGAACCGGAAGCTGATGCAGCAGCAGCAGCGGCACTGGAGCAGCTCCNTGGCCCGGACACGGTGACGGTGTCGACGGCGCAGTACGAAGCGCTGATCAAGCGGCTCGGCGACCTCGAGGAGAAGGTGGCGGCGCTCACCTCCCGCCCTCCCGAGATGCCCGCCGACAAGGAGGACTTGCTCAAAGCCGCCGTCACCCGCGTCGAGGCCCTCGAGACCGAGCTCGAATCCACCAAGAAGCTTTTGGAAGATTCGTCGGGGCAGCAGGAGGAGGTGCTGGCCTACATCGAGAAGAAGAAGAAGAAGAGGGGGATGCAGAATCCATTCCGCTGGTGATGGACGGGTTTAAAGCAAGAAGCGGTGATGGAGCTCGGTCGTGCGTCTCGTGTGTTGTTTTGTGTGCGTCGTCGTCGCTGTATCTGACCCCGTTTGAAATGCGGAAAAAATTTTGCTATTTCTGCGGGAGTTGAGTTGAGTTGTTTCCTCCGGGATTTCTGTGAAATTCATGTTACATACTTCTTGTGTTTCAAAAGGGGCCTTATATGTGTATAGCAAAAGGAAAAAAAACAAACTTTTTCTTGCTTAAAAA]
[+] EMBL AU085858 [GGCTTTCNTGATTGGGGTTGTTGCCGATGTTCCGGGTTTGGGGAAAATCCCCGAAGCGCGCCATGGACGCGGCGATGGGCATCGCGACGATGGAGCCGATGGCCAAGAACCGGAAGCTGATGCAGCAGCAGCAGCGGCACTGGAGCAGCTCCNTGGCCCGGACACGGTGACGGTGTCGACGGCGCAGTACGAAGCGCTGATCAAGCGGCTCGGCGACCTCGAGGAGAAGGTGGCGGCGCTCACCTCCCGCCCTCCCGAGATGCCCGCCGACAAGGAGGACTTGCTCAAAGCCGCCGTCACCCGCGTCGAGGCCCTCGAGACCGAGCTCGAATCCACCAAGAAGCTTTTGGAAGATTCGTCGGGGCAGCAGGAGGAGGTGCTGGCCTACATCGAGAAGAAGAAGAAGAAGAGGGGGATGCAGAATCCATTCCGCTGGTGATGGACGGGTTTAAAGCAAGAAGCGGTGATGGAGCTCGGTCGTGCGTCTCGTGTGTTGTTTTGTGTGCGTCGTCGTCGCTGTATCTGACCCCGTTTGAAATGCGGAAAAAATTTTGCTATTTCTGCGGGAGTTGAGTTGAGTTGTTTCCTCCGGGATTTCTGTGAAATTCATGTTACATACTTCTTGTGTTTCAAAAGGGGCCTTATATGTGTATAGCAAAAGGAAAAAAAACAAACTTTTTCTTGCTTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8371#0 AATCCGAGGAGGCCCTCGGGCTCGGCGCGGCGAATAATTTAGGAAATTGATTATTAATAA 60
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 GGCGAGCGGCGAGCGGCGATGTCGTCAGCCGCCGTGATGCCGACGCCGAGCATGAACTCC 120
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 TCATCCGCCGGCGCAGCGGCCGCGGCGGCGGCGGCAGAGGGAGGTGGCGGCGAGGACGAG 180
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 CGGCGGGCGCGGGCGCTGTCGTCGTCGTCGTCGTCGCTGCGGCAGCGCGCGATGAGCGCG 240
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 TCGTCGAAGCTGCTCCGGACGTCGCTGAGCAGGAGCAGCAAGGGGGCGGCGGCGCGGCAG 300
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 CGGAGCAGCAAGGTGATGTCGGTGTCGATCGAGGACGTGCGCGACGCGGAGGAGATGAAG 360
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 TCGGTGGACGCGTTCCGGCAGACGCTGGTGCTGGAGGAGCTCCTCCCGGCGCGCCACGAC 420
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 GACTACCACATGATGCTCCGCTTCCTCCGCGCCCGCAAGTTCGACATCGACAAGAGCAAG 480
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 CAGATGTGGAGCGACATGCTGCAATGGCGCAAGGAGTTCGGATCTGACACCATCCTCGAC 540
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 GACTTCCAGTTCGAGGAGATGGACCAGGTGCTCGAGCACTACCCGCAGGGCCACCATGGC 600
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 GTCGACCGCGAGGGCCGCCCCGTTTACATCGAGAAGCTCGGCGCGATCGACACCGCCAAG 660
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 CTCCTCCAGGTCACCAGCATGGACCGGTACGTCAAGTACCATGTCCGCGAGTTCGAGCGC 720
consensus_8371#1 -----------------------------------------------GGCTTTCNTGATT 13
* *** *
consensus_8371#0 GCCTTCGCCGTCAAGTTGCCCCGCCTGCTCCATCGCCGCCAAGCGCCATGTCGACCAGAG 780
consensus_8371#1 GGGGTTGTTGCCGATGTTCCGGGTTTGGGGAAAATCCCCGAAGCGCGCCATGGACGCGGC 73
* * * * * * * ** * ** * ** * ****** * *** *
consensus_8371#0 CACCACCATCCTCGACGTCTCGGGCGTTGGGTACCAAGAACTTCAACAAGGCCGCCAGGG 840
consensus_8371#1 GATGGGCATCG-CGACGATGGAGCCGATGG---CCAAGAACCGGAAGCTGAT--GCAGCA 127
* **** ***** * ** *** ******** ** * ***
consensus_8371#0 ATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGACTCTGTGCCGGA 900
consensus_8371#1 GCAGCAGCGGC--ACTGGAGCAGCTCCNTGGC-----CCGGACACGGTGACGGTGTCGAC 180
** **** ** ** ** ** *** * ** * * *** **
consensus_8371#0 TGTTCATCATCAA-CGCCGGTCAAG-GATTCAGGCTTCTCTGGAACACCGTCAAGTCCTT 958
consensus_8371#1 GGCGCAGTACGAAGCGCTGATCAAGCGGCTCGGCGACCTCGAGGAGAAGGTGGCGGCGCT 240
* ** * ** *** * ***** * ** * *** * * * ** * * *
consensus_8371#0 CCTCGATCCCAAGACCACAGCCAAGATCCATGTCCTAGGCAACAAGTACCAGAGCAA-GC 1017
consensus_8371#1 C----ACCTCCCGCCCTC--CCGAGATGCCCGCC---GACAAGGAGGACTTGCTCAAAGC 291
* * * * * ** * ** **** * * * * *** ** ** * *** **
consensus_8371#0 TGCTGGAAGTGATTGATCCCAGCGAATTGCCTGAGTTCCTTGGTGGCACTTGCACCTGCG 1077
consensus_8371#1 CGCCG-------TCACCCGCGTCGAGGCCCTCGAGACC-------GAGCTCGAATCCACC 337
** * * * * *** * *** * * ** * * * *
consensus_8371#0 AAGGCGGCTGCATGCGCTCCGACAAAGGGCCATGGAAAGATCCTGAAAT-CATAAAGATG 1136
consensus_8371#1 AAGAAGCTTTTGGAAGATTCGTCGGGGCAGCAGGAGGAGGTGCTGGCCTACATCGAGAAG 397
*** * * * * ** * * ** * ** * *** * *** *** *
consensus_8371#0 GTCCAATGTGGCATGGGAAGATGTGGATTTAATAGCTCGGGTCATACTGAGGCTGATGAG 1196
consensus_8371#1 AA--GAAGAAGAAGAGGGGGATGCAGAATCCATTCCGCTGGTGATGGACGGGTTTAAAGC 455
* * * * ** **** ** * ** * * *** ** ** * *
consensus_8371#0 AAGATGATCACTGAGGATGACATAGTGGCAATTCCCAAGAAGCAAGAATCAATTCGCCGT 1256
consensus_8371#1 AAGAAG--CGGTGATGGAG-CTCGGTCGTGCGTCTCGTGT-GTTGTTTTGTGTGCGTCGT 511
**** * * *** * * * ** * ** * * * * * ** ***
consensus_8371#0 GATTCCGTTGATTCACCCAAGATCCCACGCGAAAAGATTGAACATCCGCAGATGTCACCA 1316
consensus_8371#1 -----CGTCGCTGTATCT--GACCCCGTTTGAAATGCGGAAA-------AAATTTTGCTA 557
*** * * * * ** *** **** * ** * ** * * *
consensus_8371#0 CTCCATGAGATGTCAACTTCAGAAAGCAAGGCTCCTCCTGGCCAAGAGGGAAGCTCTTCC 1376
consensus_8371#1 TTTCTGCGGGAGTTGAGTTGAGTT-----GTTTCCTCCGGGATTTCTGTGAAATTC---- 608
* * * ** * ** ** * ****** ** * *** **
consensus_8371#0 CGATACGACGATCTGTTCCCCATGCCGGACAAGAACATGGACTTCAACTGGAACGGCGAA 1436
consensus_8371#1 --ATGTTACA---TACTTCTTGTGTTTCAAAAGG----GGCCTTATATGTGTATAGCAAA 659
** ** * * * ** * *** ** *** * * * ** **
consensus_8371#0 GTCAGCGCCGAGAAGCTCGCACTCGCACGAGACATGTACGCGTCGCTGCCGGACGCGTAC 1496
consensus_8371#1 AGGAAAAAAAACAAACTTTTTCTTGCTTAAAAA--------------------------- 692
* * ** ** ** ** * *
consensus_8371#0 AAGCACGGCGACGCCGGGGACCGGCAGGTGGTGACGGGGTTCATGGCGTTCGTGATGGGG 1556
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 GTGGTGGCGATGTTCCGGGTGGGGAAGATCGCGCCGAAGCGCGCCATGGACGCGGCGATG 1616
consensus_8371#1 ------------------------------------------------------------
consensus_8371#0 GGCATCGCGACGATGGAGGCGATGGCCAAGAACCG 1651
consensus_8371#1 -----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||