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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 765 fasta sequence
[TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATACACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCC-TCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCTCATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGAAG-TTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTGTGT]
[+] EMBL CF300298 [TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATACACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCC TCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAAT ]
[-] EMBL CF292779 [ AGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCC TCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCTCATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGAAG TTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTGTGT]
[-] EMBL CF300297 [ TATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCNTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATCTCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCCCATGGCGCGGGACACCTTGTGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTCTCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCAGAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTTGAACGCTAAGTAACTTGCTAACTAGTGTGGAGCTAGACTGAAGTTTTTTTTTGGACTTCAGAAGAGATCTATCGATCTCTGCTG ]
consensusID : consensus_8372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATCACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACATAATTTAGCTGGAAGGTTTAACAACCACACACAATGCCAAAGGCAGGCTAGTTTCTGCAAAATCGACACTGATTTGCTTTACAACCTAAAGTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAACCAAGCGACCACAATCTTTTTAGGCAATAACAATATCAATATACTTCCTTGATTCCTTCAGTAACTTAGCCACAGCTAGCAGGGAATATAATTTATATGGGAATTTTTTTCCTGTTGTCGGGAACCTCAAATGCTTCCACCCCTATCAGTTCCATGCTCCCTGGGTATTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGCCCTCGAGGATCTCATAGGGGCGGCACACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTGTGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGCAAGAGCCTCCTCGAACAGCTTGTTCTCCTTTTTGCTCACTCTGAGCCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCTGTTTGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTTC]
[+] EMBL CA760148 [TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATCACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACATAATTTAGCTGGAAGGTTTAACAACCACACACAATGCCAAAGGCAGGCTAGTTTCTGCAAAATCGACACTGATTTGCTTTACAACCTAAAGTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAACCAAGCGACCACAATCTTTTTAGGCAATAACAATATCAATATACTTCCTTGATTCCTTCAGTAACTTAGCCACAGCTAGCAGGGAATATAATTTATATGGGAATTTTTTTCCTGTTGTCGGGAACCTCAAATGCTTCCACCCCTATCAGTTCCATGCTCCCTGGGTATTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGCCCTCGAGGATCTCATAGGGGCGGCACACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTGTGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGCAAGAGCCTCCTCGAACAGCTTGTTCTCCTTTTTGCTCACTCTGAGCCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCTGTTTGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTTC]
consensusID : consensus_8372#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGC]
[+] EMBL CF292780 [TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATCACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCTGGAATGTTCAAAACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACACTGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAACCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTTTCCTTCAACAACTAGCCACAGGAAGGAATATAGTTTATATTGGAGTTATTTCCTTGCTGGAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8372#0 ------------------------TTTTTTTTTTTTTCCAGTAACCACAACTTTATAATC 36
consensus_8372#2 TTTTTGAAACCAATTGGTCGATTGAGCATGTGAGATTCTAGTAACCACAACTTTATAATC 60
consensus_8372#1 ---------------TTTTTTTTTTTTTTTTTTTTTTCTAGCAGGCACAACTTTATAATC 45
* * *** ** * ***************
consensus_8372#0 ACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCT 96
consensus_8372#2 ACTAGCACGCGAGTACAGAAGTCTTACATCACTGATGTTTACTACATATATAGTATAGCT 120
consensus_8372#1 ACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACA----TAATTTAGCT 101
******** * *********************************** ** * *****
consensus_8372#0 GGAATGTTCAA-AACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACA 155
consensus_8372#2 GGAATGTTCAA-AACCACACACAATGCCAAATGCAGGCTAGTTTTTTTGCAAGATCAACA 179
consensus_8372#1 GGAAGGTTTAACAACCACACACAATGCCAAAGGCAGGCTAGTTTCT--GCAAAATCGACA 159
**** *** ** ******************* ************ * **** *** ***
consensus_8372#0 CTGATTTGCTTTACAACCTAAAAGTATACACAGACAATCCCTTTCTTCTTTTATTTATAA 215
consensus_8372#2 CTGATTTGCTTTACAACCTAAAAGTATATACAGACAATCCCTTTCTTCTTTTATTTATAA 239
consensus_8372#1 CTGATTTGCTTTACAACCTAAA-GTATGTACAAACAAGGCTTTTCTTCTTTTATTTATAA 218
********************** **** *** **** * *******************
consensus_8372#0 CCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTT------- 268
consensus_8372#2 CCAAGCAATCGACCACAATCTTCTTAACACAGTAACAATATATCAATATGCTT------- 292
consensus_8372#1 CCAAGC----GACCACAATCTTTTTAG-GCAATAACAATAT--CAATATACTTCCTTGAT 271
****** ************ *** ** ********* ****** ***
consensus_8372#0 TCCTTCAACAACT-AGCCACAGG----AAGGAATATAGTTTATATTGGAGTTATTTCCTT 323
consensus_8372#2 TCCTTCAACAACT-AGCCACAGG----AAGGAATATAGTTTATATTGGAGTTATTTCCTT 347
consensus_8372#1 TCCTTCAGTAACTTAGCCACAGCTAGCAGGGAATATAATTTATATGGGAATTTTTTTCCT 331
******* **** ******** * ******** ******* *** ** *** * *
consensus_8372#0 GCTG----GAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTA 379
consensus_8372#2 GCTG----GAACCTCAGATGCTTCCACCCCTCAGTCGGTCAGTTCCATGCTCCCTGTGTA 403
consensus_8372#1 GTTGTCGGGAACCTCAAATGCTTCCACCCCT------ATCAGTTCCATGCTCCCTGGGTA 385
* ** ******** ************** ****************** ***
consensus_8372#0 TTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGCTTGATATCGTCCACGAGGATC 439
consensus_8372#2 TTGTACTTGGGGAACGGGACTCGCCTTGCCTCAATCAGC--------------------- 442
consensus_8372#1 TTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGCCCTCGAGGATC 445
********************** ******** ******
consensus_8372#0 TCGAAGTGGAGGCGCACCTCGTCGGCTGTCTTGGTGCCCCTCATGGCGCGGGACACCTTG 499
consensus_8372#2 ------------------------------------------------------------
consensus_8372#1 TCATAGGGGCGGCACACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTG 505
consensus_8372#0 TGCCAGAGATCAGGCGCGCCCTCGCCGTAGTAGGCAATGGCCTGCTCGAACAGCTTGTTC 559
consensus_8372#2 ------------------------------------------------------------
consensus_8372#1 TGAAAGAGGTCAGGCGCACCCTCGCCGTATTAGGCAAGAGCCTCCTCGAACAGCTTGTTC 565
consensus_8372#0 TCCTCTTTGCTCCACTCTGACGCCATGTTGCTGTTGCGGGACGAGCTACGTGACCCAGCA 619
consensus_8372#2 ------------------------------------------------------------
consensus_8372#1 TCCTTTTTGCTC-ACTCTGAGCCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCT-GTT 623
consensus_8372#0 GAAGACATCCTGCAGCTTGGATTTGATTAAACTAGCTAGCTACTGTCTTCTTTGGAAGTT 679
consensus_8372#2 ------------------------------------------------------------
consensus_8372#1 TGACCTAGAAAAATCCTTGGATTGGACTACGGCTTTTC---------------------- 661
consensus_8372#0 GAACGCTAAGTAACTTGCTAACTAGTGTGCAGCTAGACTGAAGTTTTTTTTGGACTTCAG 739
consensus_8372#2 ------------------------------------------------------------
consensus_8372#1 ------------------------------------------------------------
consensus_8372#0 AAGAGATCTATCGATCTCTGCTGTGT 765
consensus_8372#2 --------------------------
consensus_8372#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||