These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 789 fasta sequence [TTTTTTTTTTTTAACATGCCAAAAGTCCAAGACAGCAATTCAAAGAAAATTTAGCTCTAATGGCAGACAAGAGTCTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGGGGACAAGTCATACATGAGTACATGAAACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAAAAAACTGCTGGCCGGTGGAGGATGGTGAGTACCCCGGTGCAGTGGGGGAGTAACTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAAATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGACCTTGGTTGAGAATATGATGGTGAGGTAGGTGAGTATGTCGGCGATGTTGGGCTGTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAAGTTGGACTGTAATTTGGTGAAGTGGGGCAACGTTCGATCGATGAAGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGC] [+] EMBL CF278136 [TTTTTTTTTTTTAACATGCCAAAAGTCCAAGACAGCAATTCAAAGAAAATTTAGCTCTAATGGCAGACAAGAGTCTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGGGGACAAGTCATACATGAGTACATGAAACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAAAAAACTGCTGGCCGGTGGAGGATGGTGAGTACCCCGGTGCAGTGGGGGAGTAACTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAAATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGACCTTGGTTGAGAAT ] [-] EMBL AK062907 [ TTAGCTCTAATGGCAGACAAGAGTCTTACAACTTCAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGTGGACAAGTCATACATGAGTACATGAGACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAGAGAACTGCTGGCCGGTGGAGGATGGTGAGTAGCCCGGTGCAGTGGGGGAGTAGCTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAGATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGA CTTGGTTGTGAATATGATGGTGAGGTAGGTGAGTATGTCGGCGATGTTGGGCTGTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAAGTTGGACTGTAATTTGGTGAAGTGGGGCAACGTTCGATCGATGAAGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGC] consensusID : consensus_8373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence [CACTTCGTGACATCAACTGGAAGTCTTATTCATGTTATTTGGGAAGAGGTTGGTCCAGATGCTGCTCGCAAGTTCTTAGGTCATACACAGTGGCTAGTCAACTACTGGCTTCTGCAAAATGGTTTCAGTATTGGAATTGGGGATACAATTGCAGATGCTGCCACCATGGTGAAGATTAATGAGACAATCTCAAAAGCTAAAGATGATGTGAAGGAGCTTATTATGCAAGCTCATGATAAACAATTGGAAGCTGAGCCAGGACGCACCATGATGGAATCATTCGAAAATAGAGTAAATCAGGTTCTTAACAAGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTGTCTGAAAGCAACAACCTGAAGGCTATGGTTACTGCAGGCTCAAAAGGAAGTTTCATCAATATTTCTCAAATGACTGCTTGTGTCGGACAGCAGAATGTTGAGGGCAAGCGGATCCCATTTGGCTTCATTGATCGAACGTTGCCCCACTTCACAAAAGATGATTATGGTCCTGAAAGTCGTGGGTTTGTGGAGAACTCTTACCTTAGAGGTCTGACACCACAAGAATTTTTCTTTCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAGACCTCTGAGACTGGATATATCCAGCGACGACTTGTGAAGGCTATGGAAGATATCATAGTGAAATATGATGGTACGGTAAGAAATTCCTTGGGAGACGTCATTCAGTTCTTATATGGAGAAGATGGCATGGATGCTGTTTGGATTGAGTCACAGAAGT] [+] EMBL CB628989 [CACTTCGTGACATCAACTGGAAGTCTTATTCATGTTATTTGGGAAGAGGTTGGTCCAGATGCTGCTCGCAAGTTCTTAGGTCATACACAGTGGCTAGTCAACTACTGGCTTCTGCAAAATGGTTTCAGTATTGGAATTGGGGATACAATTGCAGATGCTGCCACCATGGTGAAGATTAATGAGACAATCTCAAAAGCTAAAGATGATGTGAAGGAGCTTATTATGCAAGCTCATGATAAACAATTGGAAGCTGAGCCAGGACGCACCATGATGGAATCATTCGAAAATAGAGTAAATCAGGTTCTTAACAAGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTGTCTGAAAGCAACAACCTGAAGGCTATGGTTACTGCAGGCTCAAAAGGAAGTTTCATCAATATTTCTCAAATGACTGCTTGTGTCGGACAGCAGAATGTTGAGGGCAAGCGGATCCCATTTGGCTTCATTGATCGAACGTTGCCCCACTTCACAAAAGATGATTATGGTCCTGAAAGTCGTGGGTTTGTGGAGAACTCTTACCTTAGAGGTCTGACACCACAAGAATTTTTCTTTCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAGACCTCTGAGACTGGATATATCCAGCGACGACTTGTGAAGGCTATGGAAGATATCATAGTGAAATATGATGGTACGGTAAGAAATTCCTTGGGAGACGTCATTCAGTTCTTATATGGAGAAGATGGCATGGATGCTGTTTGGATTGAGTCACAGAAGT] [+] EMBL CB629015 [CACTT GGGACATCAACTGGAAGTCTTATTCATGTTATTTGGGAAGAGGTTGGTCCAGATGCTGCTCGCAAGTTCTTAGGTCATACACAGTGGCTAGTCAACTACTGGCTTCTGCAAAATGGTTTCAGTATTGGAATTGGGGATACAATTGCAGATGCTGCCACCATGGTGAAGATTAATGAGACAATCTCAAAAGCTAAAGATGATGTGAAGGAGCTTATTATGCAAGCTCATGATAAACAATTGGAAGCTGAGCCAGGACGCACCATGATGGAATCATTCGAAAATAGAGTAAATCAGGTTCTTAACAAGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTGTCTGAAAGCAACAACCTGAAGGCTATGGTTACTGCAGGCTCAAAAGGAAGTTTCATCAATATTTCTCAAATGACTGCTTGTGTCGGACAGCAGAATGTTGAGGGCAAGCGGATCCCATTTGGCTTCATTGATCGAACGTTGCCCCACTTCACAAAAGATGATTATGGTCCTGAAAGTCGTGGGTTTGTGGAGAACTCTTACCTTAGAGGTCTGACACCACAAGAATTTTTCTTTCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAGACCTCTGAGACTGGATATATCCAGCGACGACTTGTGAAGGCTATGGAAGATATCATAGTGAAATATGATGGTACGGTAAGAAATTCCTTGAGAGACGTCATTCAGTTCTTATATGGAGAAGATGGCATGGATGCTGTTTGGATTGAGTCACAG ] consensusID : consensus_8373#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [TTTTCCACAAGTATAACATGCCAAAAGTCCAAGACAGCAATTCAGAGAAGATTTAGCTCTAATGGCAGACAAGAGTCTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGTGGACAAGTCATACATGAGTACATGAGACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAGAGAACTGCTGGCCGGTGGAGGATGGTGAGTAGCCCGGTGCAGTGGGGGAGTAGCTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAGATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGACTTGGTTGTGAATATGATGGTGATTTCTACTCCTTC] [-] EMBL CF317581 [TTTTCCACAAGTATAACATGCCAAAAGTCCAAGACAGCAATTCAGAGAAGATTTAGCTCTAATGGCAGACAAGAGTCTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGTGGACAAGTCATACATGAGTACATGAGACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAGAGAACTGCTGGCCGGTGGAGGATGGTGAGTAGCCCGGTGCAGTGGGGGAGTAGCTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAGATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGACTTGGTTGTGAATATGATGGTGATTTCTACTCCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8373#0 --TTTTTTTTTTTTAACATGCCAAAAGTCCAAGACA-GCAATTCAAAGAAAATTTAGCTC 57 consensus_8373#2 TTTTCCACAAGTATAACATGCCAAAAGTCCAAGACA-GCAATTCAGAGAAGATTTAGCTC 59 consensus_8373#1 ----CACTTCGTGACATCAACTGGAAGTCTTATTCATGTTATTTGGGAAGAGGTTGGTCC 56 * * * ***** * ** * *** * ** * * consensus_8373#0 TAATGGCAGACAAGAGT-CTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGAT 116 consensus_8373#2 TAATGGCAGACAAGAGT-CTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGAT 118 consensus_8373#1 AGATGCTGCTCGCAAGTTCTTAGGTCATACACAGTGGCTAGTCAACTACTGGCTTCTGCA 116 *** * *** **** * * ** ** * **** * consensus_8373#0 GGATA---TTGGCATTGAGTCCTATGATAAAA--AGAGCAGCTTCAAAGCATGCGTAAAA 171 consensus_8373#2 GGATA---TTGGCATTGAGTCCTATGATAAAA--AGAGCAGCTTCAAAGCATGCGTAAAA 173 consensus_8373#1 AAATGGTTTCAGTATTGGAATTGGGGATACAATTGCAGATGCTGCCAC-CATG-GTGAAG 174 ** * * **** **** ** ** *** * * **** ** ** consensus_8373#0 GTTAAGGTCCTTTCTTTGGGGGACAAGTCATACATGAGTACATGAAACCCTCGCTGCTAT 231 consensus_8373#2 GTTAAGGTCCTTTCTTTGGTGGACAAGTCATACATGAGTACATGAGACCCTCGCTGCTAT 233 consensus_8373#1 ATTAATGAGACAATCTCAAAAGCTAAAGATGATGTGAAGGAGCTTATTATGCAAGCTCAT 234 **** * * * ** * *** * ** consensus_8373#0 TAGCAGCACAAGGAAACTTACTATTGAGATAATTCATC--AACCAAACAAAAACTGGAAA 289 consensus_8373#2 TAGCAGCACAAGGAAACTTACTATTGAGATAATTCATC--AACCAAACAAAAACTGGAAA 291 consensus_8373#1 GATAAACAATTGGAAGCTGAGCCAGGACGCACCATGATGGAATCATTCGAAAATAGAGTA 294 * * ** **** ** * ** * ** ** * **** * * consensus_8373#0 AGTCGG---TGCAGCGCGCAGCGGATTCATCCCCAGCA-AATCACCACCCATCCTTCTTC 345 consensus_8373#2 AGTCGG---TGCAGCGCGCAGCGGATTCATCCCCAGCA-AATCACCACCCATCCTTCTTC 347 consensus_8373#1 AATCAGGTTCTTAACAAGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTGTCT 354 * ** * * * * ** * ** * * * *** ** * consensus_8373#0 AGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAA-------AAAAC 398 consensus_8373#2 AGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAG-------AGAAC 400 consensus_8373#1 GAAAGCAACAACCTGAAGGCTA-TGGTTACTGCAGGCTCAAAAGGAAGTTTCATCAATAT 413 ** ** ** ** * ** ** *** ** * * * consensus_8373#0 TGCT-GGCCGGTGGAGGATGGTGAGTACCCCGGTGCAGTGGGGGAGTAACTTCCGCTAGG 457 consensus_8373#2 TGCT-GGCCGGTGGAGGATGGTGAGTAGCCCGGTGCAGTGGGGGAGTAGCTTCCGCTAGG 459 consensus_8373#1 TTCTCAAATGACTGCTTGTGTCGGACAGCAGAATGTTGAGGGCAAGCGGATCCCATTTGG 473 * ** * * ** * * * ** * *** ** * ** * ** consensus_8373#0 GCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTG-GGCCCTCCAAATGTGGTGTATG 516 consensus_8373#2 GCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTG-GGCCCTCCAGATGTGGTGTATG 518 consensus_8373#1 -CTTCATTGATCGAACGTTGCCCCACTTCACAAAAGATGATTATGGTCCTGAAAGTCGTG 532 ** * * * **** * * * * ** ** consensus_8373#0 GGCTTGTTGGGCTGTATGACGGACCTTGGTTGAGAATATGATGGTGAGGTAGGTGAGTAT 576 consensus_8373#2 GGCTTGTTGGGCTGTATGACGGAC-TTGGTTGTGAATATGATGGTGATTTCTACTCCTTC 577 consensus_8373#1 GGTTTGTGGAGAACTCTTACCTTAGAGGTCTGACACCACAA----GAATTTTTCTTTCAT 588 ** **** * * * * ** * ** * * * ** * consensus_8373#0 GTCGGCGATGTTGGGCTGTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTG 636 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 GCTATGGGTGGTAGAGAA-GGTCTGATTGATACTGCTGTGAAGACCTCTGAGACTGGATA 647 consensus_8373#0 CTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAA 696 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 TATCCAGCG-ACGACTTGTGAAGGCTATGGAAGATATCATAGTGAA-ATATGATGGTACG 705 consensus_8373#0 GTTGGACTGTAATTTGGTGAAGTGGGGCAACGTTCGATCGATGAAGCCAAATGGGATCCG 756 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 GTAAGAAATTCCTTGGGAGACGTCATTCAGTTCTTATATGGAGAAGATGGCATGGATGCT 765 consensus_8373#0 CTTGCCCTCAACATTCTGCTGTCCGACACAAGC 789 consensus_8373#2 --------------------------------- consensus_8373#1 GTTTGGATTGAGTCACAGAAGT----------- 787 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||