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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1234 fasta sequence
[GCATTAGGCTTCCATCGTTATGAAAATATAGATGTATCATTACTCAAGAGAGAATACAAGAAAAAGGCTATGTTAGTCCACCCTGATAAGAACATGGGCAATGATAAAGCTGCTGATGCATTTAAAAAACTTCAAAATGCATACGAGGTTCTTCTTGATTCTTTGAAACGGAAGACATATGATGATGAGCTAAGGAGGGAGGAGCTTTTGAACTACTTCAGACGGTTTCAGAGTGCTTCTCAAAAGAAAGGAGGAAGTGGTATTTTTCGACAAGGGTTTAGCCCTTCTGAAGGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGAAGAAGGGCAAGAAGCAATGGTAACTGAAGAAGGTCCGATAATGGCGATTCTTCTTTGTGAGCAGAAAGAAGTAAAACATATGGTGTTTGTTCGGTATAGTTATGCAGGAAAACACCCCAATAATAGGGGTCCTAGATGCTCAACCATCCTGACTCGCTTTAAGGCGATGCCATTCAAAATCATGATTCATCTTGCTGTGATTTTTCATATGGAGAATTAGAAATCAGAAGAGAAGAAAGGGCCATGTATGTGGCAAAGATTGTTGGAATGTAAAGCGCAAAATATGTTGAGCCTACATGATTGAATTGTTTGGACAGGTAGCGCAAGCTACAATTTCCATACACTTGTCATGAGATATATTACATTGTTGCTGATGTCTCGTTGATAAAA]
[+] EMBL AK060945 [GCATTAGGCTTCCATCGTTATGAAAATATAGATGTATCATTACTCAAGAGAGAATACAAGAAAAAGGCTATGTTAGTCCACCCTGATAAGAACATGGGCAATGATAAAGCTGCTGATGCATTTAAAAAACTTCAAAATGCATACGAGGTTCTTCTTGATTCTTTGAAACGGAAGACATATGATGATGAGCTAAGGAGGGAGGAGCTTTTGAACTACTTCAGACGGTTTCAGAGTGCTTCTCAAAAGAAAGGAGGAAGTGGTATTTTTCGACAAGGGTTTAGCCCTTCTGAAGGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGAAGAAGGGCAAGAAGCAATGGTAACTGAAGAAGGTCCGATAATGGCGATTCTTCTTTGTGAGCAGAAAGAAGTAAAACATATGGTGTTTGTTCGGTATAGTTATGCAGGAAAACACCCCAATAATAGGGGTCCTAGATGCTCAACCATCCTGACTCGCTTTAAGGCGATGCCATTCAAAATCATGATTCATCTTGCTGTGATTTTTCATATGGAGAATTAGAAATCAGAAGAGAAGAAAGGGCCATGTATGTGGCAAAGATTGTTGGAATGTAAAGCGCAAAATATGTTGAGCCTACATGATTGAATTGTTTGGACAGGTAGCGCAAG ]
[+] EMBL AY224585 [ GATTCTTTGAAACGGAAGACATATGATGATGAGCTAAGGAGGGAGGAGCTTTTGAACTACTTCAGACGGTTTCAGAGTGCTTCTCAAAAGAAAGGAGGAAGTGGTATTTTTCGACAAGGGTTTAGCCCTTCTGAAGGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAA ]
[-] EMBL CA760224 [ GAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTG TAAAGCAGAATAGTGGCAATGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGAAGAAGGGCGAGAAGCAATGGTAACTGAAGAAGGTCCGATAATGGCGATTCTTCTTTGTGAGCAGAAAGAAGTAGAACATATGGTGTTTGTTCGGTATAGTTATGCAGGAAAACACCCCAATAATAGGGGTCCTAGATGCTCAACCATCCTGACTCGCTTTAAGGCGATGCCATTCAAAATCATGATTCATCTTGCTGTGATTTTTCATATGGAGAATTAGAAATCAGAAGAGAAGAAAGGGCCATGTATGTGGCAAAGATTGCTGGAATGTAAAGCGCAAAATATGTTGAGCCTACATGATTGAATTGTTTGGACAGGTAGCGCAAGCTACAATTTCCATACACTTGTCATGAGATATATTACATTGTTGCTGATGTCTCGTTGATAAAA]
consensusID : consensus_8377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[AGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGNNGNNNNGCAAGANGCAATGGTAACTGAANNNNNTCCGNTNATGGCGNNNCTTCTTTGTGANNNNNNNNNNN]
[+] EMBL CF197144 [AGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAGAGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAAAAGNNGNNNNGCAAGANGCAATGGTAACTGAANNNNNTCCGNTNATGGCGNNNCTTCTTTGTGANNNNNNNNNNN]
consensusID : consensus_8377#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[GGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCNNNNNGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGNNNNNNNNNTCTTCGNNNNNNNGCNNNNTGCACTGCNNTCTGGCATGTTTGNNNNNT]
[+] EMBL CF197081 [GGTGTTGATGAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTGTGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTTCACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGGTTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGATGTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGCTTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCNNNNNGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGNNNNNNNNNTCTTCGNNNNNNNGCNNNNTGCACTGCNNTCTGGCATGTTTGNNNNNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8377#0 GCATTAGGCTTCCATCGTTATGAAAATATAGATGTATCATTACTCAAGAGAGAATACAAG 60
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 AAAAAGGCTATGTTAGTCCACCCTGATAAGAACATGGGCAATGATAAAGCTGCTGATGCA 120
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 TTTAAAAAACTTCAAAATGCATACGAGGTTCTTCTTGATTCTTTGAAACGGAAGACATAT 180
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 GATGATGAGCTAAGGAGGGAGGAGCTTTTGAACTACTTCAGACGGTTTCAGAGTGCTTCT 240
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 CAAAAGAAAGGAGGAAGTGGTATTTTTCGACAAGGGTTTAGCCCTTCTGAAGGTGTTGAT 300
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 ---------------------------------------------------GGTGTTGAT 9
consensus_8377#0 GAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTG 360
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 GAAGGACCTTATGGTTTATCAAGAAGAATAGCCTGCAAGAAATGTGGTGACTTCCACCTG 69
consensus_8377#0 TGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTT 420
consensus_8377#1 -----------------------------AGCTAGATGGTGTCAGGACTGCAATGATTTT 31
consensus_8377#2 TGGATTTATACAGGAAGAGCTAAATCGCAAGCTAGATGGTGTCAGGACTGCAATGATTTT 129
*******************************
consensus_8377#0 CACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGG 480
consensus_8377#1 CACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGG 91
consensus_8377#2 CACCAAGCTAAAGATGGGGATGGATGGGTTGAGCAGTCTTTTCAACCAGTTCTATTTGGG 189
************************************************************
consensus_8377#0 TTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGAT 540
consensus_8377#1 TTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGAT 151
consensus_8377#2 TTGCTGCACAAGCCTGAATTGCCTCATGCATATGTTTGTGCTGAAAGCATCATTTTCGAT 249
************************************************************
consensus_8377#0 GTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGC 600
consensus_8377#1 GTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGC 211
consensus_8377#2 GTCACCGAGTGGTTCACCTGTCAGGGAATGAGATGCCCCGCGAACACTCACAAGCCGAGC 309
************************************************************
consensus_8377#0 TTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAG 660
consensus_8377#1 TTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCAG 271
consensus_8377#2 TTCCATGTCAATGCCAGCTTGTTAAAGCAGAATAGTGGCAAGGGGAGCACCTCGGCGCNN 369
**********************************************************
consensus_8377#0 AGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTC 720
consensus_8377#1 AGGGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTC 331
consensus_8377#2 NNNGGTGGAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGNNNNNNNNNTC 429
********************************************** **
consensus_8377#0 TTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAAC 780
consensus_8377#1 TTCGAGTGGTTGCAGAATGCACTGCAGTCTGGCATGTTTGAATCGTTTGGCGCGCAAAAC 391
consensus_8377#2 TTCGNNNNNNNGCNNNNTGCACTGCNNTCTGGCATGTTTGNNNNNT-------------- 475
**** ** ******** ************* *
consensus_8377#0 GAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAA 840
consensus_8377#1 GAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAGCAGTAGTAAGAAA 451
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 AAGAAGAAGGGCAAGAAGCAATGGTAACTGAAGAAGGTCCGATAATGGCGATTCTTCTTT 900
consensus_8377#1 AAGNNGNNNNGCAAGANGCAATGGTAACTGAANNNNNTCCGNTNATGGCGNNNCTTCTTT 511
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 GTGAGCAGAAAGAAGTAAAACATATGGTGTTTGTTCGGTATAGTTATGCAGGAAAACACC 960
consensus_8377#1 GTGANNNNNNNNNNN--------------------------------------------- 526
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 CCAATAATAGGGGTCCTAGATGCTCAACCATCCTGACTCGCTTTAAGGCGATGCCATTCA 1020
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 AAATCATGATTCATCTTGCTGTGATTTTTCATATGGAGAATTAGAAATCAGAAGAGAAGA 1080
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 AAGGGCCATGTATGTGGCAAAGATTGTTGGAATGTAAAGCGCAAAATATGTTGAGCCTAC 1140
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 ATGATTGAATTGTTTGGACAGGTAGCGCAAGCTACAATTTCCATACACTTGTCATGAGAT 1200
consensus_8377#1 ------------------------------------------------------------
consensus_8377#2 ------------------------------------------------------------
consensus_8377#0 ATATTACATTGTTGCTGATGTCTCGTTGATAAAA 1234
consensus_8377#1 ----------------------------------
consensus_8377#2 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||