Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8390 cluster # 8390       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8390#0 length = 1703 sequences # 3  
consensus_8390#1 length = 785 sequences # 1  
consensus_8390#2 length = 728 sequences # 1  

consensusID : consensus_8390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1703
fasta sequence
                              [ACGGCCGCGTCCCGCTCGGTCGCCGGAGACACCATGGCCTCGCCGCTCGCCGGCGTCGTCCGGCTCGCCGCCGCCTCCCGCGCGCTGCTCCTCGCCCTCTCCCTCCTCTCCCGCCTCCTCTTCCGCCCCTACGACACCTCCGCCTCTCTCCACCCACCCTGCCTCCTCCCCTCCCCCTCCCCCAACTCCACCACCACCGCCGCCAACTCCATCGCCTCCCTCGCCGTGTGGGACGGCGTCCACTTCCTCCGCGCCGCCGAGTGCGGCTACGAGTACGAGCAGTCCTTCGCCTTCCTCCCGCTCCTCCCGGCCTCGCTCAACCTCCTCGCCCGATCCGTGCTCGCGCCGCTGGTGCCCGTGCTGGGGTACAGGGCCGTGCTCGTGGTCTCCGGCTACGTTCTCAACAACGTCGCGTTCGTCGCCGCCGCGGCCTACTTCTACAGATTGTCCGTGCTGATCTTGAAGAGCCCGAGTGCTGCTTACCGAGCATCTGTTCTCTTTTGCTTCAACCCTGCTTCTGTGTTCTACTCATCACTGTACTCAGAGAGTCTATATGCTCTGTTTTCACTTGGGGGAGTATTCTACGTGTTTACCGGTGCTAATACCATTGCAATGATAATGCTCGCTCTCTCCGGTTCAGCTAGATCAAATGGAGCACTTAATGCTGGTTATTTCTGTTTTCAGGCTTTGCTACATGCATATGATGCTGCTTTCCAGAAGAAACAGCCCATGCTGGCAGTACAGGTTCTTGTCACTGGATTTTTGCGGTCTGTTTTTGTATTTATTCCGTTCTTTGCTTTCCAAGCATACGGATATCTGAACATATGCCTACACGGGAATATGGAGGAACTGAGACCATGGTGCAAATCTAAAGTGCCTCTTTTGTATGGTTTCATTCAAAGTCACTACTGGGGGGTTGGTTTCTTGAGGTACTTTCAAGTGAAGCAGCTTCCAAACTTTCTTTTGGCTTCACCAGTTTTGAGTCTTGCAGTTTATTCTATTGTTCATTACACAAAAATGCTTCGCCAACTCTTTGAATCAAATAGCATACATGAACTGATTGTTGCTACGGTCGAGGGGAGATCAATTGAAGCATACAAAAGCTCAGATGTTGACACAGTATTAAAGAGTAAAGTTTCTACTAATGTAACTAACAAAGCACAAGGAAATGCAGTTGCTAAGAGGAGAAAATCAGTTGCTACCGAAACCGACTCAAATGACCAAATTATTGAAGTTAATAAGGATGTGTGCCCCATAGTAGTTCTTCCTTTCATTTTACATCTGGCATTCATGACATTCACTGCATTCTTTGTGATGCACGTCCAGGTCTCGACACGATTTTTATCTGCTAGTCCTCCAATTTACTGGGCAGCATCGCACATTTTGGTTTCTCCAAGCAGTTCTAAGAGATGGGGCAACATAATATGTGCTTATTTCATAGCTTATATTCTCCTTGGTAGCTTGCTTTTCTCCAATTTCTACCCGTTCACATGAAAATAGTTATGTCAATTATATGACCCGACGATCCACGCTGTAATGGATTGGTTTGCGCAATTTTTATTTATCATTGCGTGGATGATGGTAACTAGTTTTTGAAGATTTTCCTAGGTAAAGCTGTAAAATCAAAGATGTTTTGATTATTATTCTGTGATGAACAATTGGCATTGGAGATTATTGGTTTTGTTAAAAAAAAAAAAAAAAAA]

[+] EMBL AK073582             [ACGGCCGCGTCCCGCTCGGTCGCCGGAGACACCATGGCCTCGCCGCTCGCCGGCGTCGTCCGGCTCGCCGCCGCCTCCCGCGCGCTGCTCCTCGCCCTCTCCCTCCTCTCCCGCCTCCTCTTCCGCCCCTACGACACCTCCGCCTCTCTCCACCCACCCTGCCTCCTCCCCTCCCCCTCCCCCAACTCCACCACCACCGCCGCCAACTCCATCGCCTCCCTCGCCGTGTGGGACGGCGTCCACTTCCTCCGCGCCGCCGAGTGCGGCTACGAGTACGAGCAGTCCTTCGCCTTCCTCCCGCTCCTCCCGGCCTCGCTCAACCTCCTCGCCCGATCCGTGCTCGCGCCGCTGGTGCCCGTGCTGGGGTACAGGGCCGTGCTCGTGGTCTCCGGCTACGTTCTCAACAACGTCGCGTTCGTCGCCGCCGCGGCCTACTTCTACAGATTGTCCGTGCTGATCTTGAAGAGCCCGAGTGCTGCTTACCGAGCATCTGTTCTCTTTTGCTTCAACCCTGCTTCTGTGTTCTACTCATCACTGTACTCAGAGAGTCTATATGCTCTGTTTTCACTTGGGGGAGTATTCTACGTGTTTACCGGTGCTAATACCATTGCAATGATAATGCTCGCTCTCTCCGGTTCAGCTAGATCAAATGGAGCACTTAATGCTGGTTATTTCTGTTTTCAGGCTTTGCTACATGCATATGATGCTGCTTTCCAGAAGAAACAGCCCATGCTGGCAGTACAGGTTCTTGTCACTGGATTTTTGCGGTCTGTTTTTGTATTTATTCCGTTCTTTGCTTTCCAAGCATACGGATATCTGAACATATGCCTACACGGGAATATGGAGGAACTGAGACCATGGTGCAAATCTAAAGTGCCTCTTTTGTATGGTTTCATTCAAAGTCACTACTGGGGGGTTGGTTTCTTGAGGTACTTTCAAGTGAAGCAGCTTCCAAACTTTCTTTTGGCTTCACCAGTTTTGAGTCTTGCAGTTTATTCTATTGTTCATTACACAAAAATGCTTCGCCAACTCTTTGAATCAAATAGCATACATGAACTGATTGTTGCTACGGTCGAGGGGAGATCAATTGAAGCATACAAAAGCTCAGATGTTGACACAGTATTAAAGAGTAAAGTTTCTACTAATGTAACTAACAAAGCACAAGGAAATGCAGTTGCTAAGAGGAGAAAATCAGTTGCTACCGAAACCGACTCAAATGACCAAATTATTGAAGTTAATAAGGATGTGTGCCCCATAGTAGTTCTTCCTTTCATTTTACATCTGGCATTCATGACATTCACTGCATTCTTTGTGATGCACGTCCAGGTCTCGACACGATTTTTATCTGCTAGTCCTCCAATTTACTGGGCAGCATCGCACATTTTGGTTTCTCCAAGCAGTTCTAAGAGATGGGGCAACATAATATGTGCTTATTTCATAGCTTATATTCTCCTTGGTAGCTTGCTTTTCTCCAATTTCTACCCGTTCACATGAAAATAGTTATGTCAATTATATGATCCGACGATCCACGCTGTAATGGATTGGTTTGCGCAATTTTTATTTAT                                                                                                                                          ]
[-] EMBL CA762025             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              agacaAGGGGAGATCAATTGAAGCATACAAAAGCTCAGATGTTGACACAGTATTAAAGAGTAAAGTTTCTACTAATGTAACTAACAAAGCACAAGGAAATGCAGTTGCTAAGAGGAGAAAATCAGTTGCTACCGAAACCGACTCAAATGACCAAATTATTGAAGTTAATAAGGATGTGTGCCCCATAGTAGTTCTTCCTTTCATTTTACATCTGGCATTCATGACATTCACTGCATTCTTTGTGGTGCACGTCCAGGTCTCGACACGATTTTTATTTGCTAGTCCTCCAATTTACTGGGCAGCATCGCACATTTTGGTTTCTCCAAGCAGTTTTAAGAGATGGGGCAACATAATATGTGCTTATTTCATAGCTTATATTCTCCTTGGTAGCTTGCTTTTCTCCAATTTCTACCCGTTCACATGAAAATAGTTATGTCAATTATATGACCCGACGATCCACGCTGTAATGGATTGGTTTGCGCAATTTTTATTTATCATTGCGTGGATGATGGTAACTAGTTTTTGAAGATTTTCCTAGGTAAAGCTGTAAAATCAAAGATGTTTTGATTATTATTCTGTGATGAACAATTGGCATTGGAGATTATTGGTTTTGTTAAAAAAAAAAAAAAAAAA]
[+] EMBL CA767349             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGAAGCATACAAAAGCTCAGATGTTGACACAGTATTAAAGAGTAAAGTTTCTACTAATGTAACTAACAAAGCACAAGGAAATGCAGTTGCTAAGAGGAGAAAATCAGTTGCTACCGAAACCGACTCAAATGACCAAATTATTGAAGTTAATAAGGATGTGTGCCCCATAGTAGTTCTTCCTTTCATTTTACATCTGGCATTCATGACATTCACTGCATTCTTTGTGATGCACGTCCAGGTCTCGACACGATTTTTATCTGCTAGTCCTCCAATTTACTGGGCAGCATCGCACATTTTGGTTTCTCCAAGCAGTTCTAAGAGATGGGGCAACATAATATGTGCTTATTTCATAGCTTATATTCTCCTTGGTAGCTTGCTTTTCTCCAATTTCTACCCGTTCACATGAAAATAGTTATGTAAATTATATGACCCGACGATCCACGCTGTAATGGATTGGTTTGCGCAATTTTTATTTATCATTGCGTGGATGATGGTAACTAGTTTTTGAAGATTCTCCTAGGTAAAGCTGTAAAATCAAAGATGTTTTGATTATTATTCTGTGATGAACAATTGGCATTGG                                   ]


>consensus_8390#0 ACGGCCGCGTCCCGCTCGGTCGCCGGAGACACCATGGCCTCGCCGCTCGCCGGCGTCGTC CGGCTCGCCGCCGCCTCCCGCGCGCTGCTCCTCGCCCTCTCCCTCCTCTCCCGCCTCCTC TTCCGCCCCTACGACACCTCCGCCTCTCTCCACCCACCCTGCCTCCTCCCCTCCCCCTCC CCCAACTCCACCACCACCGCCGCCAACTCCATCGCCTCCCTCGCCGTGTGGGACGGCGTC CACTTCCTCCGCGCCGCCGAGTGCGGCTACGAGTACGAGCAGTCCTTCGCCTTCCTCCCG CTCCTCCCGGCCTCGCTCAACCTCCTCGCCCGATCCGTGCTCGCGCCGCTGGTGCCCGTG CTGGGGTACAGGGCCGTGCTCGTGGTCTCCGGCTACGTTCTCAACAACGTCGCGTTCGTC GCCGCCGCGGCCTACTTCTACAGATTGTCCGTGCTGATCTTGAAGAGCCCGAGTGCTGCT TACCGAGCATCTGTTCTCTTTTGCTTCAACCCTGCTTCTGTGTTCTACTCATCACTGTAC TCAGAGAGTCTATATGCTCTGTTTTCACTTGGGGGAGTATTCTACGTGTTTACCGGTGCT AATACCATTGCAATGATAATGCTCGCTCTCTCCGGTTCAGCTAGATCAAATGGAGCACTT AATGCTGGTTATTTCTGTTTTCAGGCTTTGCTACATGCATATGATGCTGCTTTCCAGAAG AAACAGCCCATGCTGGCAGTACAGGTTCTTGTCACTGGATTTTTGCGGTCTGTTTTTGTA TTTATTCCGTTCTTTGCTTTCCAAGCATACGGATATCTGAACATATGCCTACACGGGAAT ATGGAGGAACTGAGACCATGGTGCAAATCTAAAGTGCCTCTTTTGTATGGTTTCATTCAA AGTCACTACTGGGGGGTTGGTTTCTTGAGGTACTTTCAAGTGAAGCAGCTTCCAAACTTT CTTTTGGCTTCACCAGTTTTGAGTCTTGCAGTTTATTCTATTGTTCATTACACAAAAATG CTTCGCCAACTCTTTGAATCAAATAGCATACATGAACTGATTGTTGCTACGGTCGAGGGG AGATCAATTGAAGCATACAAAAGCTCAGATGTTGACACAGTATTAAAGAGTAAAGTTTCT ACTAATGTAACTAACAAAGCACAAGGAAATGCAGTTGCTAAGAGGAGAAAATCAGTTGCT ACCGAAACCGACTCAAATGACCAAATTATTGAAGTTAATAAGGATGTGTGCCCCATAGTA GTTCTTCCTTTCATTTTACATCTGGCATTCATGACATTCACTGCATTCTTTGTGATGCAC GTCCAGGTCTCGACACGATTTTTATCTGCTAGTCCTCCAATTTACTGGGCAGCATCGCAC ATTTTGGTTTCTCCAAGCAGTTCTAAGAGATGGGGCAACATAATATGTGCTTATTTCATA GCTTATATTCTCCTTGGTAGCTTGCTTTTCTCCAATTTCTACCCGTTCACATGAAAATAG TTATGTCAATTATATGACCCGACGATCCACGCTGTAATGGATTGGTTTGCGCAATTTTTA TTTATCATTGCGTGGATGATGGTAACTAGTTTTTGAAGATTTTCCTAGGTAAAGCTGTAA AATCAAAGATGTTTTGATTATTATTCTGTGATGAACAATTGGCATTGGAGATTATTGGTT TTGTTAAAAAAAAAAAAAAAAAA



consensusID : consensus_8390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 785
fasta sequence
                              [TCTGTCTTTTCAGGGGGGTTGGTTTCTTGAGGTACTTTCAAGTGAAGCAGCTTCCAAACTTTCTTTTGGCTTCACCAGTTTTGAGTCTTGCAGTTTATTCTATTGTTCATTACACAAAAATGCTTCGCCAACTCTTTGAATCAAATAGCATACATGAACTGATTGTTGCTACGGTCGAGGGGAGATCAATTGAAGCATACAAAAGCTCAGATGTTGACACAGTATTAAAGAGTAAAGTTTCTACTAATGTAACTAACAAAGCACAAGGAAATGCAGTTGCTAAGAGGAGAAAATCAGTTGCTACCGAAACCGACTCAAATGACCAAATTATTGAAGTTAATAAGGATGTGTGCCCCATAGTAGTTCTTCCTTTCATTTTACATCTGGCATTCATGACATTCACTGCATTCTTTGTGATGCACGTCCAGGTCTCGACACGATTTTTATCTGCTAGTCCTCCAATTTACTGGGCAGCATCGCACATTTTGGTTTCTCCAAGCAGTTCTAAGAGATGGGGCAACATAATATGTGCTTATTTCATAGCTTATATTCTCCTTGGTAGCTTGCTTTTCTCCAATTTCTACCCGTTCACATGAAAATAGTTATGTCAATTATATGATCCGACGATCCACGCTGTAATGGATTGGTTTGCGCAATTTTTATTTATCATTGCGTGGATGATGGTAACTAGTTTTTGAAGATTCTCCTAGGTAAAGCTGTAAAATCAAAGATGTTTTGAAGAGGATTCTGTGATGAACAATTGGCATTGGAGATTCCTAAAAGGG]

[-] EMBL CB654822             [TCTGTCTTTTCAGGGGGGTTGGTTTCTTGAGGTACTTTCAAGTGAAGCAGCTTCCAAACTTTCTTTTGGCTTCACCAGTTTTGAGTCTTGCAGTTTATTCTATTGTTCATTACACAAAAATGCTTCGCCAACTCTTTGAATCAAATAGCATACATGAACTGATTGTTGCTACGGTCGAGGGGAGATCAATTGAAGCATACAAAAGCTCAGATGTTGACACAGTATTAAAGAGTAAAGTTTCTACTAATGTAACTAACAAAGCACAAGGAAATGCAGTTGCTAAGAGGAGAAAATCAGTTGCTACCGAAACCGACTCAAATGACCAAATTATTGAAGTTAATAAGGATGTGTGCCCCATAGTAGTTCTTCCTTTCATTTTACATCTGGCATTCATGACATTCACTGCATTCTTTGTGATGCACGTCCAGGTCTCGACACGATTTTTATCTGCTAGTCCTCCAATTTACTGGGCAGCATCGCACATTTTGGTTTCTCCAAGCAGTTCTAAGAGATGGGGCAACATAATATGTGCTTATTTCATAGCTTATATTCTCCTTGGTAGCTTGCTTTTCTCCAATTTCTACCCGTTCACATGAAAATAGTTATGTCAATTATATGATCCGACGATCCACGCTGTAATGGATTGGTTTGCGCAATTTTTATTTATCATTGCGTGGATGATGGTAACTAGTTTTTGAAGATTCTCCTAGGTAAAGCTGTAAAATCAAAGATGTTTTGAAGAGGATTCTGTGATGAACAATTGGCATTGGAGATTCCTAAAAGGG]


>consensus_8390#1 TCTGTCTTTTCAGGGGGGTTGGTTTCTTGAGGTACTTTCAAGTGAAGCAGCTTCCAAACT TTCTTTTGGCTTCACCAGTTTTGAGTCTTGCAGTTTATTCTATTGTTCATTACACAAAAA TGCTTCGCCAACTCTTTGAATCAAATAGCATACATGAACTGATTGTTGCTACGGTCGAGG GGAGATCAATTGAAGCATACAAAAGCTCAGATGTTGACACAGTATTAAAGAGTAAAGTTT CTACTAATGTAACTAACAAAGCACAAGGAAATGCAGTTGCTAAGAGGAGAAAATCAGTTG CTACCGAAACCGACTCAAATGACCAAATTATTGAAGTTAATAAGGATGTGTGCCCCATAG TAGTTCTTCCTTTCATTTTACATCTGGCATTCATGACATTCACTGCATTCTTTGTGATGC ACGTCCAGGTCTCGACACGATTTTTATCTGCTAGTCCTCCAATTTACTGGGCAGCATCGC ACATTTTGGTTTCTCCAAGCAGTTCTAAGAGATGGGGCAACATAATATGTGCTTATTTCA TAGCTTATATTCTCCTTGGTAGCTTGCTTTTCTCCAATTTCTACCCGTTCACATGAAAAT AGTTATGTCAATTATATGATCCGACGATCCACGCTGTAATGGATTGGTTTGCGCAATTTT TATTTATCATTGCGTGGATGATGGTAACTAGTTTTTGAAGATTCTCCTAGGTAAAGCTGT AAAATCAAAGATGTTTTGAAGAGGATTCTGTGATGAACAATTGGCATTGGAGATTCCTAA AAGGG



consensusID : consensus_8390#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence
                              [GGCCGCCTCTCGCTCGGTCGCCGGAGACACCATGGCCTCGCCGCTCGCCGGCGTCGTCCGGCTCGCCGCCGCCTCCCGCGCGCTGCTCCTCGCCCTCTCCCTCCTCTCCCGCCTCCTCTTCCGCCCCTACGACACCTCCGCCTCTCTCCACCCACCCTGCCTCCTCCCCTCCCCCTCCCCCAACTCCACCACCACCGCCGCCAACTCCATCGCCTCCCTCGCCGTGTGGGACGGCGTCCACTTCCTCCGCGCCGCCGAGTGCGGCTACGAGTACGAGCAGTCCTTCGCCTTCCTCCCGCTCCTCCCGGCCTCGCTCAACCTCCTCGCCCGATCCGTGCTCGCGCCGCTGGTGCCCGTGCTGGGGTACAGGGCCGTGCTCGTGGTCTCCGGCTACGTTCTCAACAACGTCGCGTTCGTCGCCGCCGCGGCCTACTTCTACAGATTGTCCGTGCTGATCTTGAAGAGCCCGAGTGCTGCTTACCGAGCATCTGTTCTCTTTTGCTTCAACCCTGCTTCTGTGTTCTACTCATCACTGTACTCAGAGAGTCTATATGCTCTGTTTTCACTTGGGGGAGTATTCTACGTGTTTACCGGCTTTGCTACATGCATATGATGCTGCTTTCCAGAAGAAACAGCCCATGCTGGCAGTACAGGTTCTTGTCACTGGATTTTTGCGGACTGTTTTTGTATTTATTCCGTTCTTTGCTTTCCAAGCATACGGATATCTG]

[+] EMBL CB654821             [GGCCGCCTCTCGCTCGGTCGCCGGAGACACCATGGCCTCGCCGCTCGCCGGCGTCGTCCGGCTCGCCGCCGCCTCCCGCGCGCTGCTCCTCGCCCTCTCCCTCCTCTCCCGCCTCCTCTTCCGCCCCTACGACACCTCCGCCTCTCTCCACCCACCCTGCCTCCTCCCCTCCCCCTCCCCCAACTCCACCACCACCGCCGCCAACTCCATCGCCTCCCTCGCCGTGTGGGACGGCGTCCACTTCCTCCGCGCCGCCGAGTGCGGCTACGAGTACGAGCAGTCCTTCGCCTTCCTCCCGCTCCTCCCGGCCTCGCTCAACCTCCTCGCCCGATCCGTGCTCGCGCCGCTGGTGCCCGTGCTGGGGTACAGGGCCGTGCTCGTGGTCTCCGGCTACGTTCTCAACAACGTCGCGTTCGTCGCCGCCGCGGCCTACTTCTACAGATTGTCCGTGCTGATCTTGAAGAGCCCGAGTGCTGCTTACCGAGCATCTGTTCTCTTTTGCTTCAACCCTGCTTCTGTGTTCTACTCATCACTGTACTCAGAGAGTCTATATGCTCTGTTTTCACTTGGGGGAGTATTCTACGTGTTTACCGGCTTTGCTACATGCATATGATGCTGCTTTCCAGAAGAAACAGCCCATGCTGGCAGTACAGGTTCTTGTCACTGGATTTTTGCGGACTGTTTTTGTATTTATTCCGTTCTTTGCTTTCCAAGCATACGGATATCTG]


>consensus_8390#2 GGCCGCCTCTCGCTCGGTCGCCGGAGACACCATGGCCTCGCCGCTCGCCGGCGTCGTCCG GCTCGCCGCCGCCTCCCGCGCGCTGCTCCTCGCCCTCTCCCTCCTCTCCCGCCTCCTCTT CCGCCCCTACGACACCTCCGCCTCTCTCCACCCACCCTGCCTCCTCCCCTCCCCCTCCCC CAACTCCACCACCACCGCCGCCAACTCCATCGCCTCCCTCGCCGTGTGGGACGGCGTCCA CTTCCTCCGCGCCGCCGAGTGCGGCTACGAGTACGAGCAGTCCTTCGCCTTCCTCCCGCT CCTCCCGGCCTCGCTCAACCTCCTCGCCCGATCCGTGCTCGCGCCGCTGGTGCCCGTGCT GGGGTACAGGGCCGTGCTCGTGGTCTCCGGCTACGTTCTCAACAACGTCGCGTTCGTCGC CGCCGCGGCCTACTTCTACAGATTGTCCGTGCTGATCTTGAAGAGCCCGAGTGCTGCTTA CCGAGCATCTGTTCTCTTTTGCTTCAACCCTGCTTCTGTGTTCTACTCATCACTGTACTC AGAGAGTCTATATGCTCTGTTTTCACTTGGGGGAGTATTCTACGTGTTTACCGGCTTTGC TACATGCATATGATGCTGCTTTCCAGAAGAAACAGCCCATGCTGGCAGTACAGGTTCTTG TCACTGGATTTTTGCGGACTGTTTTTGTATTTATTCCGTTCTTTGCTTTCCAAGCATACG GATATCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8390#0      ACGGCCGCGTCCCGCTCGGTCGCCGGAGACACCATGGCCTCGCCGCTCGCCGGCGTCGTC 60
consensus_8390#2      --GGCCGCCTCTCGCTCGGTCGCCGGAGACACCATGGCCTCGCCGCTCGCCGGCGTCGTC 58
consensus_8390#1      ---------------TCTGTCTTTTCAGGGGGGTTGGTTTCTTGA------GGTACTTTC 39
                                     ** ***     **      ***  **          **     **

consensus_8390#0      CGGCTC-GCCGCCGCCTCCCGCGCGCTGCTCCTCGCCCTCTCCCTCCTCTCCCGCCTCCT 119
consensus_8390#2      CGGCTC-GCCGCCGCCTCCCGCGCGCTGCTCCTCGCCCTCTCCCTCCTCTCCCGCCTCCT 117
consensus_8390#1      AAGTGAAGCAGCTTCCAAACTTTCTTTTGGCTTCACCAGTTTTGAGTCTTGCAGTTTATT 99
                        *    ** **  **   *   *  *   * ** **   *        * * *  *  *

consensus_8390#0      CTTCCGCCCCTACGACACCTCCGCCTCTCTCCACCCACCCTGCCTCCTCCCCTCCCCCTC 179
consensus_8390#2      CTTCCGCCCCTACGACACCTCCGCCTCTCTCCACCCACCCTGCCTCCTCCCCTCCCCCTC 177
consensus_8390#1      CTATTGTTC--ATTACACAAAAATGCTTCGCCAACT-CTTTGAATCAAATAGCATACATG 156
                      **   *  *  *  ****         ** *** *  *  **  **          * * 

consensus_8390#0      CCCCAACT-CCACCACCACCGCCGCCAACTCCATCGCCTCCCTCGCCGTGTGGGACGGCG 238
consensus_8390#2      CCCCAACT-CCACCACCACCGCCGCCAACTCCATCGCCTCCCTCGCCGTGTGGGACGGCG 236
consensus_8390#1      AACTGATTGTTGCTACGGTCGAGGGGAGATCAATTGAAGCATACAAAAGCTCAGATGTTG 216
                        *  * *    * **   **  *  *  ** ** *   *   *      *  ** *  *

consensus_8390#0      TCCACTTCCTCCGCGCCGCCGAGTGCGGCTACGAGTACGAGCAGTCCTTCGCCTTCCTCC 298
consensus_8390#2      TCCACTTCCTCCGCGCCGCCGAGTGCGGCTACGAGTACGAGCAGTCCTTCGCCTTCCTCC 296
consensus_8390#1      AC-ACAGTATTAAAGAGTAAAGTTTCTACTAATGTAACTAACAAAGCACAAGGAAATGCA 275
                       * **    *    *        * *  ***     ** * **   *           * 

consensus_8390#0      CGCTCCTCCCGGCCTCGCTCAACCTCCTC---GCCCGATCCG--TGCTCGCGCCGCTGGT 353
consensus_8390#2      CGCTCCTCCCGGCCTCGCTCAACCTCCTC---GCCCGATCCG--TGCTCGCGCCGCTGGT 351
consensus_8390#1      GTTGCTAAGAGGAGAAAATCAGTTGCTACCGAAACCGACTCAAATGACCAAATTATTGAA 335
                          *     **      ***    *  *     ****  *   **  *       **  

consensus_8390#0      GCCCGTGCTGGGGTACAGGGCCGTGCTCGTGGTCTCCGGCTACGTTCTCAACAACGTCGC 413
consensus_8390#2      GCCCGTGCTGGGGTACAGGGCCGTGCTCGTGGTCTCCGGCTACGTTCTCAACAACGTCGC 411
consensus_8390#1      GTTAATAAGGATGT---GTGCCCCA-TAGTAGTTCTTCCTTTCATTTT--ACATC-TGGC 388
                      *    *   *  **   * ***    * ** **       * * ** *  *** * * **

consensus_8390#0      GTTCGTCGCCGCCGCGGCCTACTTCTACAGATTGTCCGTGCTGATCTTGAAGAGCCCGAG 473
consensus_8390#2      GTTCGTCGCCGCCGCGGCCTACTTCTACAGATTGTCCGTGCTGATCTTGAAGAGCCCGAG 471
consensus_8390#1      ATTCATGACATTCACTGCATTCTTT---GTGATGCACGTCCAGGTCTCGA----CACGAT 441
                       *** *  *   * * ** * ***        **  *** * * *** **    * *** 

consensus_8390#0      TGCTGCTTACCGAGCATCTGTTCTCTTTTGCTTCAACCCTGCTTCTGTGTTCTACTCATC 533
consensus_8390#2      TGCTGCTTACCGAGCATCTGTTCTCTTTTGCTTCAACCCTGCTTCTGTGTTCTACTCATC 531
consensus_8390#1      TTTTATCTGCTAGTCCTCCAATTTACTGGGCAGCATCGCACATTTTGGTTTCTCCAAGCA 501
                      *  *   * *    * **   * *  *  **  ** * *   ** **  **** *     

consensus_8390#0      ACTGTACTCAGAGAGTCTATATGCTCTGTTTTCACTTGGGGGA--GTATTCTACGTGTTT 591
consensus_8390#2      ACTGTACTCAGAGAGTCTATATGCTCTGTTTTCACTTGGGGGA--GTATTCTACGTGTTT 589
consensus_8390#1      GTTCTAAGAGATGGGGCAACATAATATGTGCTTATTTCATAGCTTATATTCTCCTTGGTA 561
                        * **      * * * * **  * ***  * * **    *    ****** * ** * 

consensus_8390#0      ACCGGTGCTAATACCATTGCAATGATAATGCTCGCTCTCTCCGGTTCAGCTAGATCAAAT 651
consensus_8390#2      ACCGG------------------------------------------------------- 594
consensus_8390#1      GCTTGCTTTTCTCCAATTTCTACCCGTTCACATGAAAATAGTTATGTCAATTATATGATC 621
                       *  *                                                       

consensus_8390#0      GGAGCACTTAATGCTGGTTATTTCTGTTTTCAGGCTTTGCTACATGCATATGATGCTGCT 711
consensus_8390#2      ----------------------------------CTTTGCTACATGCATATGATGCTGCT 620
consensus_8390#1      CGACGATCCACGCTGTAATGGATTGG-------TTTGCGCAATTTTTATTTATCATTGCG 674
                                                         *  ** *  *  ** *     *** 

consensus_8390#0      TTCCAGAAGAAACAGCCCATGCTGGCAGTACAGGTTCTTGTCACTGGATTTTTGCGGTCT 771
consensus_8390#2      TTCCAGAAGAAACAGCCCATGCTGGCAGTACAGGTTCTTGTCACTGGATTTTTGCGGACT 680
consensus_8390#1      TGGATGATGGTA-ACTAGTTTTTGAAGATTCTCCTAGGTAAAGCTGTAAAATCAAAGA-T 732
                      *    ** *  * *     *  **    * *   *   *    *** *   *    *  *

consensus_8390#0      GTTTTTGTATTTATTCCGTTCTTTGCTTTCCAAGCATACGGATATCTGAACATATGCCTA 831
consensus_8390#2      GTTTTTGTATTTATTCCGTTCTTTGCTTTCCAAGCATACGGATATCTG------------ 728
consensus_8390#1      GTTTTGAAGAGGATTCTGTGATGAACAATTGGCAT-TGGAGATTCCTAAAAGGG------ 785
                      *****       **** **  *   *  *       *   ***  **             

consensus_8390#0      CACGGGAATATGGAGGAACTGAGACCATGGTGCAAATCTAAAGTGCCTCTTTTGTATGGT 891
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      TTCATTCAAAGTCACTACTGGGGGGTTGGTTTCTTGAGGTACTTTCAAGTGAAGCAGCTT 951
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      CCAAACTTTCTTTTGGCTTCACCAGTTTTGAGTCTTGCAGTTTATTCTATTGTTCATTAC 1011
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      ACAAAAATGCTTCGCCAACTCTTTGAATCAAATAGCATACATGAACTGATTGTTGCTACG 1071
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      GTCGAGGGGAGATCAATTGAAGCATACAAAAGCTCAGATGTTGACACAGTATTAAAGAGT 1131
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      AAAGTTTCTACTAATGTAACTAACAAAGCACAAGGAAATGCAGTTGCTAAGAGGAGAAAA 1191
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      TCAGTTGCTACCGAAACCGACTCAAATGACCAAATTATTGAAGTTAATAAGGATGTGTGC 1251
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      CCCATAGTAGTTCTTCCTTTCATTTTACATCTGGCATTCATGACATTCACTGCATTCTTT 1311
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      GTGATGCACGTCCAGGTCTCGACACGATTTTTATCTGCTAGTCCTCCAATTTACTGGGCA 1371
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      GCATCGCACATTTTGGTTTCTCCAAGCAGTTCTAAGAGATGGGGCAACATAATATGTGCT 1431
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      TATTTCATAGCTTATATTCTCCTTGGTAGCTTGCTTTTCTCCAATTTCTACCCGTTCACA 1491
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      TGAAAATAGTTATGTCAATTATATGACCCGACGATCCACGCTGTAATGGATTGGTTTGCG 1551
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      CAATTTTTATTTATCATTGCGTGGATGATGGTAACTAGTTTTTGAAGATTTTCCTAGGTA 1611
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      AAGCTGTAAAATCAAAGATGTTTTGATTATTATTCTGTGATGAACAATTGGCATTGGAGA 1671
consensus_8390#2      ------------------------------------------------------------
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      TTATTGGTTTTGTTAAAAAAAAAAAAAAAAAA 1703
consensus_8390#2      --------------------------------
consensus_8390#1      --------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)