These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1607 fasta sequence [GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCATCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACACTGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTATGAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTGGATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCACGAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGATGCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAAACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGACATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGCTGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGATGGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCGCCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGGAAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGGTAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTTCTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGAGATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTGGAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTACAGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCACAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTCTTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA] [+] EMBL AK111453 [GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCATCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACACTGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTATGAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTGGATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCACGAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGATGCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAAACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGACATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGCTGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGATGGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCGCCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGGAAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGGTAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTTCTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGAGATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTGGAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTACAGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCACAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTCTTTTGTTAATATCATCATTAGAAGC ] [+] EMBL C99190 [ GANCACATGGTGTTANAGGTGTTTGGGCANCGCTTCCTCGCTGGAANTTGGTCGAACCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGAACGTGCCNCGTGCGCTTTGCTTGCTTAANTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAANAGGGTGTGCCCTTTTCACAGTACACACCACGCAGATGAAGGGCTNACAAAGTAGCAATTGCTTTTGTGTAAATANTCTTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 323 fasta sequence [CGCCCACGCGTCCGCGACTTCACTTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTC-GGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAAGNGGGACGACA] [+] EMBL C22698 [CGCCCACGCGTCCGCGACTTCACTTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTC GGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCAC ] [+] EMBL C22695 [ TTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGGNATTCAAaaag ] [+] EMBL AU033307 [ TTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTNANAAAGTTGATGTNNTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGANCCAAAACTCTC GGAATTCAACAGCGAGGNGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGNTTCCCTCACAAAGNGGGACGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8394#0 GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCA 60 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 TCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACAC 120 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 TGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTAT 180 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 GAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTG 240 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 GATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCAC 300 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 GAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGAT 360 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 GCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAA 420 consensus_8394#1 -----------------------------------------------------------C 1 consensus_8394#0 ACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATG 480 consensus_8394#1 GCCCACGCGTCCGCGACTTCACTTTGCCCAGT-GGCTACCTTGCACCTGAGTATGCCATG 60 * **** * * * * ** ** * *************************** consensus_8394#0 AGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACT 540 consensus_8394#1 AGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACT 120 ************************************************************ consensus_8394#0 GTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAA 600 consensus_8394#1 GTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAA 180 ************************************************************ consensus_8394#0 AGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCG 660 consensus_8394#1 AGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCG 240 ************************************************************ consensus_8394#0 GAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGC 720 consensus_8394#1 GAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGC 300 ************************************************************ consensus_8394#0 TCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGAC 780 consensus_8394#1 TCCCCTCACAAA-GNGGGACGACA------------------------------------ 323 *********** * * * * consensus_8394#0 ATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGC 840 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 TGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGAT 900 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 GGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCG 960 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 CCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGG 1020 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 AAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGG 1080 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 TAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTT 1140 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 CTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGA 1200 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 GATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTG 1260 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 GAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTAC 1320 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 AGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCT 1380 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 AGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTT 1440 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 GGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCA 1500 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 CAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTC 1560 consensus_8394#1 ------------------------------------------------------------ consensus_8394#0 TTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA 1607 consensus_8394#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||