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Oryza sativa
cluster # 8394 cluster # 8394       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8394#0 length = 1607 sequences # 2  
consensus_8394#1 length = 323 sequences # 3  

consensusID : consensus_8394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1607
fasta sequence
                              [GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCATCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACACTGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTATGAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTGGATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCACGAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGATGCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAAACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGACATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGCTGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGATGGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCGCCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGGAAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGGTAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTTCTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGAGATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTGGAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTACAGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCACAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTCTTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK111453             [GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCATCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACACTGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTATGAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTGGATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCACGAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGATGCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAAACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGACATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGCTGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGATGGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCGCCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGGAAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGGTAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTTCTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGAGATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTGGAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTACAGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCACAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTCTTTTGTTAATATCATCATTAGAAGC                      ]
[+] EMBL C99190               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GANCACATGGTGTTANAGGTGTTTGGGCANCGCTTCCTCGCTGGAANTTGGTCGAACCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGAACGTGCCNCGTGCGCTTTGCTTGCTTAANTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAANAGGGTGTGCCCTTTTCACAGTACACACCACGCAGATGAAGGGCTNACAAAGTAGCAATTGCTTTTGTGTAAATANTCTTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA]


>consensus_8394#0 GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCA TCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACAC TGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTAT GAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTG GATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCAC GAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGAT GCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAA ACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATG AGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACT GTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAA AGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCG GAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGC TCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGAC ATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGC TGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGAT GGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCG CCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGG AAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGG TAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTT CTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGA GATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTG GAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTAC AGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCT AGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTT GGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCA CAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTC TTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA



consensusID : consensus_8394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 323
fasta sequence
                              [CGCCCACGCGTCCGCGACTTCACTTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTC-GGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAAGNGGGACGACA]

[+] EMBL C22698               [CGCCCACGCGTCCGCGACTTCACTTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTC GGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCAC              ]
[+] EMBL C22695               [                       TTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGGNATTCAAaaag                                                                       ]
[+] EMBL AU033307             [                        TTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTNANAAAGTTGATGTNNTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGANCCAAAACTCTC GGAATTCAACAGCGAGGNGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGNTTCCCTCACAAAGNGGGACGACA]


>consensus_8394#1 CGCCCACGCGTCCGCGACTTCACTTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATG AGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACT GTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAA AGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCG GAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGC TCCCCTCACAAAGNGGGACGACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8394#0      GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCA 60
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      TCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACAC 120
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      TGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTAT 180
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      GAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTG 240
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      GATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCAC 300
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      GAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGAT 360
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      GCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAA 420
consensus_8394#1      -----------------------------------------------------------C 1
                                                                                  

consensus_8394#0      ACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATG 480
consensus_8394#1      GCCCACGCGTCCGCGACTTCACTTTGCCCAGT-GGCTACCTTGCACCTGAGTATGCCATG 60
                       * ****    * * *       * ** ** * ***************************

consensus_8394#0      AGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACT 540
consensus_8394#1      AGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACT 120
                      ************************************************************

consensus_8394#0      GTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAA 600
consensus_8394#1      GTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAA 180
                      ************************************************************

consensus_8394#0      AGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCG 660
consensus_8394#1      AGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCG 240
                      ************************************************************

consensus_8394#0      GAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGC 720
consensus_8394#1      GAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGC 300
                      ************************************************************

consensus_8394#0      TCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGAC 780
consensus_8394#1      TCCCCTCACAAA-GNGGGACGACA------------------------------------ 323
                      ***********  *   * * *                                      

consensus_8394#0      ATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGC 840
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      TGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGAT 900
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      GGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCG 960
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      CCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGG 1020
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      AAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGG 1080
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      TAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTT 1140
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      CTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGA 1200
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      GATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTG 1260
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      GAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTAC 1320
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      AGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCT 1380
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      AGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTT 1440
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      GGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCA 1500
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      CAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTC 1560
consensus_8394#1      ------------------------------------------------------------
                                                                                  

consensus_8394#0      TTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA 1607
consensus_8394#1      -----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)