Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8398 cluster # 8398       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8398#0 length = 1748 sequences # 4  
consensus_8398#1 length = 1615 sequences # 1  

consensusID : consensus_8398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1748
fasta sequence
                              [TCGCCGCCGCTTCTAGGTCTTCTTCTCGGTGACCGGCGAGGCAGCCGGCGCGGCTTTGCCGGCGAGGGCTATAGGTTGCCGGCACGTGCGACCTGCTCCGTAGCGAGCGCACGGGGGGCTGCCGTGACTGAGCAGCCGCACCGCGCGGCAATTAATGCTTCGTGCCTCCCAGTGAGCTGCCTTGATCGGCTGACACCCTCTCCGCAGCTTCACCCGAGATGGAGGATCTCCCCATGGGGCGGCGGAACCCGGCGGCCAGCCTCACCGACGACCTCGTCGTCGAGATCCTCCGCCGCCTCCCCGTCCGCTCCGTGTGCCGCTTCAAGCGCGTCTGCCGGTCCTGGCGCAACCTCATCGCCGACCGTGAGCACCGCAAGAAGCTGCCGCAGACGCTGTCCGGCTTCTTCTACAAAAGCATCAGCGGCGAGCGCTGCCCTTGCTCGGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGCCTCTCATCTACCCGTCATTCTCCTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACTGCTGCAATGGCCTCCTCCTCTGCCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATGAGATTGAGCCGTTCCATTATGCCGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGCCGGATGCCGACTGGGCTAATGGCGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAATCTCCTCGCATTTCCATGTTCTTGAGTATGTGGAGGCTGAATATGAAGATGTCACGGGGG-TTGAGATCTACTCTTCCGAAACTGGG-TTGTGGACTCTTCATGTGAGTGGATGGGGCGATGATGTGTTTCTAAGGCATTGGGCCAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATTCTGCTACGTGTGCTGCTGAGATTGCGGTGGTTGACATGGAGGGGAAGAAATGGAGGACCATTGCTATGCCGGAGCCTGAAGGTGATACTGGCATAATTCATCAAACTCAGGGTCGCCTATGTGCTTTTAATGTTGATCCAGATGACATCTTCAAACTGTCAATTTGGATTCTTGAAGATTATGATACAGATAATTGGATATTAAAGCACACCGTTAGCTCCTTGAGGCTGTTTGGAGGGAAGAAATATCAGTTTGGATTTGACTACCAAATAATTGTGGTTCATCCAGAATGTAATTTGATATTCTTTGTTTATGGATGGGACAAAACGTTGATGGCATATGAAATGGATCGCAAGGAAGTGCGTGTTATACGCAATCTTGGACATGACTCCTCGGATCCATATCTACCGTATGTTCCACTCTTTTATGAGTCATTTGCAGATGGGCGCTAACATGCAGAGCGTCGGCTCCACTTTTACTACTGCGAAAACATCCTTTTGCACTAGGAGAACCAAGCTTAGAGTGGGCAGAAAGCCATTCTCTAGTACAAGGATTTAGCAAGGTCTGTTTTATTGTACTTGAATTAAGAAGTCAGATGGTAGTACTAGTACTATGTAGATTGTCTTTTGGAAGGTTTGTCCTGTTACTCTGAAGGTTGTCTTGTTTTATTCTACTGGTGTTTACCCTATTATAGTGAAGCTTTGATGTAATATGCTAACACTGAAAGGTCTTTTGACTGTATCAGCACAATCTGTTTAGGGTACTGTGACAGTGTGACTAATGTTTTGAATGTTGGAGCACACCCACATATGTACTTCCTGTTTTAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK101804             [TCGCCGCCGCTTCTAGGTCTTCTTCTCGGTGACCGGCGAGGCAGCCGGCGCGGCTTTGCCGGCGAGGGCTATAGGTTGCCGGCACGTGCGACCTGCTCCGTAGCGAGCGCACGGGGGGCTGCCGTGACTGAGCAGCCGCACCGCGCGGCAATTAATGCTTCGTGCCTCCCAGTGAGCTGCCTTGATCGGCTGACACCCTCTCCGCAGCTTCACCCGAGATGGAGGATCTCCCCATGGGGCGGCGGAACCCGGCGGCCAGCCTCACCGACGACCTCGTCGTCGAGATCCTCCGCCGCCTCCCCGTCCGCTCCGTGTGCCGCTTCAAGCGCGTCTGCCGGTCCTGGCGCAACCTCATCGCCGACCGTGAGCACCGCAAGAAGCTGCCGCAGACGCTGTCCGGCTTCTTCTACAAAAGCATCAGCGGCGAGCGCTGCCCTTGCTCGGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGCCTCTCATCTACCCGTCATTCTCCTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACTGCTGCAATGGCCTCCTCCTCTGCCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATGAGATTGAGCCGTTCCATTATGCCGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGCCGGATGCCGACTGGGCTAATGGCGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAATCTCCTCGCATTTCCATGTTCTTGAGTATGTGGAGGCTGAATATGAAGATGTCACGGGGG TTGAGATCTACTCTTCCGAAACTGGG TTGTGGACTCTTCATGTGAGTGGATGGGGCGATGATGTGTTTCTAAGGCATTGGGCCAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATTCTGCTACGTGTGCTGCTGAGATTGCGGTGGTTGACATGGAGGGGAAGAAATGGAGGACCATTGCTATGCCGGAGCCTGAAGGTGATACTGGCATAATTCATCAAACTCAGGGTCGCCTATGTGCTTTTAATGTTGATCCAGATGACATCTTCAAACTGTCAATTTGGATTCTTGAAGATTATGATACAGATAATTGGATATTAAAGCACACCGTTAGCTCCTTGAGGCTGTTTGGAGGGAAGAAATATCAGTTTGGATTTGACTACCAAATAATTGTGGTTCATCCAGAATGTAATTTGATATTCTTTGTTTATGGATGGGACAAAACGTTGATGGCATATGAAATGGATCGCAAGGAAGTGCGTGTTATACGCAATCTTGGACATGACTCCTCGGATCCATATCTACCGTATGTTCCACTCTTTTATGAGTCATTTGCAGATGGGCGCTAACATGCAGAGCGTCGGCTCCACTTTTACTACTGCGAAAACATCCTTTTGCACTAGGAGAACCAAGCTTAGAGTGGGCAGAAAGCCATTCTCTAGTACAAGGATTTAGCAAGGTCTGTTTTATTGTACTTGAATTAAGAAGTCAGATGGTAGTACTAGTACTATGTAGATTGTCTTTTGGAAGGTTTGTCCTGTTACTCTGAAGGTTGTCTTGTTTTATTCTACTGGTGTTTACCCTATTATAGTGAAGCTTTGATGTGATATGCTAACACTGAAAGGTCTTTTGACTGTATCAGCACAATCTGTTTAGGGTACTGTGACAGTGTGACTAATGTTTTGA                                                           ]
[+] EMBL AK063926             [                      TTCTCGGTGACCGGCGAGGCAGCCGGCGCGGCTTTGCCGGCGAGGGCTATAGGTTGCCGGCACGTGCGACCTGCTCCGTAGCGAGCGCACGGGGGGCTGCCGTGACTGAGCAGCCGCACCGCGCGGCAATTAATGCTTCGTGCCTCCCAGTGAGCTGCCTTGATCGGCTGACACCCTCTCCGCAGCTTCACCCGAGATGGAGGATCTCCCCATGGGGCGGCGGAACCCGGCGGCCAGCCTCACCGACGACCTCGTCGTCGAGATCCTCCGCCGCCTCCCCGTCCGCTCCGTGTGCCGCTTCAAGCGCGTCTGCCGGTCCTGGCGCAACCTCATCGCCGACCGTGAGCACCGCAAGAAGCTGCCGCAGACGCTGTCCGGCTTCTTCTACAAAAGCATCAGCGGCGAGCGCTGCCCTTGCTCGGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGCCTCTCATCTACCCGTCATTCTCCTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACTGCTGCAATGGCCTCCTCCTCTGCCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATGAGATTGAGCCGTTCCATTATGCCGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGCCGGATGCCGACTGGGCTAATGGCGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAATCTCCTCGCATTTCCATGTTCTTGAGTATGTGGAGGCTGAATATGAAGATGTCACGGGGG TTGAGATCTACTCTTCCGAAACTGGG TTGTGGACTCTTCATGTGAGTGGATGGGGCGATGATGTGTTTCTAAGGCATTGGGCCAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATTCTGCTACGTGTGCTGCTGAGATTGCGGTGGTTGACATGGAGGGGAAGAAATGGAGGACCATTGCTATGCCGGAGCCTGAAGGTGATACTGGCATAATTCATCAAACTCAGGGTCGCCTATGTGCTTTTAATGTTGATCCAGATGACATCTTCAAACTGTCAATTTGGATTCTTGAAGATTATGATACAGATAATTGGATATTAAAGCACACCGTTAGCTCCTTGAGGCTGTTTGGAGGGAAGAAATATCAGTTTGGATTTGACTACCAAATAATTGTGGTTCATCCAGAATGTAATTTGATATTCTTTGTTTATGGATGGGACAAAACGTTGATGGCATATGAAATGGATCGCAAGGAAGTGCGTGTTATACGCAATCTTGGACATGACTCCTCGGATCCATATCTACCGTATGTTCCACTCTTTTATGAGTCATTTGCAGATGGGCGCTAACATGCAGAGCGTCGGCTCCACTTTTACTACTGCGAAAACATCCTTTTGCACTAGGAGAACCAAGCTTAGAGTGGGCAGAAAGCCATTCTCTAGTACAAGGATTTAGCAAGGTCTGTTTTATTGTACTTGAATTAAGAAGTCAGATGGTAGTACTAGTACTATGTAGATTGTCTTTTGGAAGGTTTGTTCTGTTACTCTGAAGGTTGTCTTGTTTTATTCTACTGGTGTTTACCCTATTATAGTGAAGCTTTGATGTAATATGCTAACACTGAAAGGTCTTTTGACTGTATCAGCACAATCTGTTTAGGGTACTGTGACAGTGTGACTAATGTTTTGAATGTTGGAGCACA                                              ]
[+] EMBL CF277292             [                                                                                                                                                                                                                                                                                                                                                                                                                              GCATCAGCGGCGAGCGCTGCCCTTGCTCGGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGCCTCTCATCTACCCGTCATTCTCCTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACTGCTGCAATGGCCTCCTCCTCTGCCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATGAGATTGAGCCGTTCCATTATGCCGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGCCGGATGCCGACTGGGCTAATGGCGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAATCTCCTCGCATTTCCATGTTCTTGAGTATGTGGAGGCTGAATATGAAGATGT NCGGGGGTTTGAGATCTACTCTTCCG AACTGGGTTTGTGGACTCTTCATGTGAGTGGATGGGGCGATGATGTGTTTCTAAGGCATTGGGCCAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATTCTGCTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CF277293             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACTCTTTTATGAGTCATTTGCAGATGGGCGCTAACATGCGGAGCGTCGGCTCCACTTTTACTACTGCGAAAACATCCTTTTGCACTAGGAGAACCAAGCTTAGAGTGGGCAGAAAGCCATTTTTTAGTACAAGGATTTGGCAAGGTCTGTTTTATTGTACTTGAATTAAGAAGTCAGATGGTAGTACTAGTACTATGTAGATTGTCTTTTGGAAGGTTTGTCCTGTTACTCTGAAGGTTGTCTTGTTTTATTCTACTGGTGTTTACCCTATTATAGTGAAGCTTTGATGTAATATGCTAACCCTGAAAGGTCTTTTGACTGTATCAGCCCAATCTGTTTAGGGTACTGTGACAGTGTGACTAATGTTTTGAATGTTGGAGCCCCCCCACATATGTACTTCCTGTTTTAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8398#0 TCGCCGCCGCTTCTAGGTCTTCTTCTCGGTGACCGGCGAGGCAGCCGGCGCGGCTTTGCC GGCGAGGGCTATAGGTTGCCGGCACGTGCGACCTGCTCCGTAGCGAGCGCACGGGGGGCT GCCGTGACTGAGCAGCCGCACCGCGCGGCAATTAATGCTTCGTGCCTCCCAGTGAGCTGC CTTGATCGGCTGACACCCTCTCCGCAGCTTCACCCGAGATGGAGGATCTCCCCATGGGGC GGCGGAACCCGGCGGCCAGCCTCACCGACGACCTCGTCGTCGAGATCCTCCGCCGCCTCC CCGTCCGCTCCGTGTGCCGCTTCAAGCGCGTCTGCCGGTCCTGGCGCAACCTCATCGCCG ACCGTGAGCACCGCAAGAAGCTGCCGCAGACGCTGTCCGGCTTCTTCTACAAAAGCATCA GCGGCGAGCGCTGCCCTTGCTCGGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGC CTCTCATCTACCCGTCATTCTCCTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACT GCTGCAATGGCCTCCTCCTCTGCCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATG AGATTGAGCCGTTCCATTATGCCGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGC CGGATGCCGACTGGGCTAATGGCGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAA TCTCCTCGCATTTCCATGTTCTTGAGTATGTGGAGGCTGAATATGAAGATGTCACGGGGG TTGAGATCTACTCTTCCGAAACTGGGTTGTGGACTCTTCATGTGAGTGGATGGGGCGATG ATGTGTTTCTAAGGCATTGGGCCAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATT CTGCTACGTGTGCTGCTGAGATTGCGGTGGTTGACATGGAGGGGAAGAAATGGAGGACCA TTGCTATGCCGGAGCCTGAAGGTGATACTGGCATAATTCATCAAACTCAGGGTCGCCTAT GTGCTTTTAATGTTGATCCAGATGACATCTTCAAACTGTCAATTTGGATTCTTGAAGATT ATGATACAGATAATTGGATATTAAAGCACACCGTTAGCTCCTTGAGGCTGTTTGGAGGGA AGAAATATCAGTTTGGATTTGACTACCAAATAATTGTGGTTCATCCAGAATGTAATTTGA TATTCTTTGTTTATGGATGGGACAAAACGTTGATGGCATATGAAATGGATCGCAAGGAAG TGCGTGTTATACGCAATCTTGGACATGACTCCTCGGATCCATATCTACCGTATGTTCCAC TCTTTTATGAGTCATTTGCAGATGGGCGCTAACATGCAGAGCGTCGGCTCCACTTTTACT ACTGCGAAAACATCCTTTTGCACTAGGAGAACCAAGCTTAGAGTGGGCAGAAAGCCATTC TCTAGTACAAGGATTTAGCAAGGTCTGTTTTATTGTACTTGAATTAAGAAGTCAGATGGT AGTACTAGTACTATGTAGATTGTCTTTTGGAAGGTTTGTCCTGTTACTCTGAAGGTTGTC TTGTTTTATTCTACTGGTGTTTACCCTATTATAGTGAAGCTTTGATGTAATATGCTAACA CTGAAAGGTCTTTTGACTGTATCAGCACAATCTGTTTAGGGTACTGTGACAGTGTGACTA ATGTTTTGAATGTTGGAGCACACCCACATATGTACTTCCTGTTTTAAAAAAAAAAAAAAA AAAAAAAA



consensusID : consensus_8398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1615
fasta sequence
                              [GCAACGGCATTCCCACATCGGGGATGCGTCGCCGCCGCTTCTAGGTCTTCTTCTTCTCGGTGACCGGCGAGGCAGCCGGCGGCCCGGCGCGGCTTTGCCGGCGAGGGCTGTAGGTTGCCGGCGCGTGCGACGTGCTCCGCGGTGAGCGCACGGGGGCTGCCGTGACCTAGCGGCCGCACCACGCGGCAATTAATGCTTCGTGCCTCCCAGTGAGCTGCCTTGATCGGCTGACACCCTCTCCGCAGCTTCACCCGAGATGGAGGATCTCCCCATGGGGCGGCGGAACCCGGCGGCCAGCCTCACCGACGACCTCGTCGTCGAGATCCTCCGCCGCCTCCCCGTCCGCTCCGTGTGCCGCTTCAAGCGCGTCTGCCGGTCCTGGCGCAACCTCATCGCCGACCGTGAGCACCGCAAGAAGCTGCCGCAGACGCTGTCCGGCTTCTTCTACAAAAGCAGCAGCGGCGAGCGCTGCCCTTGCTCGGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGCCTCTCATCTACCCGTCATTCTCCTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACTGCTGCAATGGCCTCCTCCTCTGCCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATGAGATTGAGCCGTTCCATTATGCCGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGCCGGATGCCGACTGGGCTAATGGCGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAATCTCCTCGCATTTCCATGTTCTTGAGTATGTGGAGGCTGAATATGAAGATGTCACGGGGGTTGAGATCTACTCTTCCGAAACTGGGTTGTGGACTCTTCATGTGAGTGGATGGGGCGATGATGTGTTTCTAAGGCATTGGGCCAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATTCTGCTACGTGTGCTGCTGAGATTGCGGTGGTTGACATGGAGGGGAAGAAATGGAGGACCATTGCTATGCCGGAGCCTGAAGGTGATACTGGCATAATTCATCAAACTCAGGGTCGCCTATGTGCTTTTAATGTTGATCCAGATGACATCTTCAAACTGTCAATTTGGATTCTTGAAGATTATGATACAGATAATTGGATATTAAAGCACACCGTTAGCTCCTTGAGGCTGTTTGGAGGGATGAAATATCGGTTTGGATTTGACTACCAAATAATTGCAGTTCATCCGGAATGTAATTTGATCTTCTTTGTTTATGGATGGGACAAAACGTTGATGGCATATGAAATGGATCGCAAGGAAGTTCGTGCTATACGCAATCTCGGACATGACTCCTTTGAGCCATATCTACCATATGTTCCACTCTTTAATGAGTCATTAGCAGATGGGTGCTAACGTGCAGAGTGTCGCTTCACTTCTATCACTGCAAAAACATCCTTTTGCACCAAGGATAACCAAGCTAAGAGTGAGAAAAGCCAATCTCTGATATTTAATTAGGAAGTTCAGTTTGTACTAGAATGATGTCTTTTCCTTTGTGTTGTTTTGAGAATGCTGCTAAGTCTGATGGTACGTAGTAAGTAAATTGGCTTTTGGAAAGTTTGTCATTGTTCTGAAGTGTAT]

[+] EMBL AK100978             [GCAACGGCATTCCCACATCGGGGATGCGTCGCCGCCGCTTCTAGGTCTTCTTCTTCTCGGTGACCGGCGAGGCAGCCGGCGGCCCGGCGCGGCTTTGCCGGCGAGGGCTGTAGGTTGCCGGCGCGTGCGACGTGCTCCGCGGTGAGCGCACGGGGGCTGCCGTGACCTAGCGGCCGCACCACGCGGCAATTAATGCTTCGTGCCTCCCAGTGAGCTGCCTTGATCGGCTGACACCCTCTCCGCAGCTTCACCCGAGATGGAGGATCTCCCCATGGGGCGGCGGAACCCGGCGGCCAGCCTCACCGACGACCTCGTCGTCGAGATCCTCCGCCGCCTCCCCGTCCGCTCCGTGTGCCGCTTCAAGCGCGTCTGCCGGTCCTGGCGCAACCTCATCGCCGACCGTGAGCACCGCAAGAAGCTGCCGCAGACGCTGTCCGGCTTCTTCTACAAAAGCAGCAGCGGCGAGCGCTGCCCTTGCTCGGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGCCTCTCATCTACCCGTCATTCTCCTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACTGCTGCAATGGCCTCCTCCTCTGCCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATGAGATTGAGCCGTTCCATTATGCCGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGCCGGATGCCGACTGGGCTAATGGCGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAATCTCCTCGCATTTCCATGTTCTTGAGTATGTGGAGGCTGAATATGAAGATGTCACGGGGGTTGAGATCTACTCTTCCGAAACTGGGTTGTGGACTCTTCATGTGAGTGGATGGGGCGATGATGTGTTTCTAAGGCATTGGGCCAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATTCTGCTACGTGTGCTGCTGAGATTGCGGTGGTTGACATGGAGGGGAAGAAATGGAGGACCATTGCTATGCCGGAGCCTGAAGGTGATACTGGCATAATTCATCAAACTCAGGGTCGCCTATGTGCTTTTAATGTTGATCCAGATGACATCTTCAAACTGTCAATTTGGATTCTTGAAGATTATGATACAGATAATTGGATATTAAAGCACACCGTTAGCTCCTTGAGGCTGTTTGGAGGGATGAAATATCGGTTTGGATTTGACTACCAAATAATTGCAGTTCATCCGGAATGTAATTTGATCTTCTTTGTTTATGGATGGGACAAAACGTTGATGGCATATGAAATGGATCGCAAGGAAGTTCGTGCTATACGCAATCTCGGACATGACTCCTTTGAGCCATATCTACCATATGTTCCACTCTTTAATGAGTCATTAGCAGATGGGTGCTAACGTGCAGAGTGTCGCTTCACTTCTATCACTGCAAAAACATCCTTTTGCACCAAGGATAACCAAGCTAAGAGTGAGAAAAGCCAATCTCTGATATTTAATTAGGAAGTTCAGTTTGTACTAGAATGATGTCTTTTCCTTTGTGTTGTTTTGAGAATGCTGCTAAGTCTGATGGTACGTAGTAAGTAAATTGGCTTTTGGAAAGTTTGTCATTGTTCTGAAGTGTAT]


>consensus_8398#1 GCAACGGCATTCCCACATCGGGGATGCGTCGCCGCCGCTTCTAGGTCTTCTTCTTCTCGG TGACCGGCGAGGCAGCCGGCGGCCCGGCGCGGCTTTGCCGGCGAGGGCTGTAGGTTGCCG GCGCGTGCGACGTGCTCCGCGGTGAGCGCACGGGGGCTGCCGTGACCTAGCGGCCGCACC ACGCGGCAATTAATGCTTCGTGCCTCCCAGTGAGCTGCCTTGATCGGCTGACACCCTCTC CGCAGCTTCACCCGAGATGGAGGATCTCCCCATGGGGCGGCGGAACCCGGCGGCCAGCCT CACCGACGACCTCGTCGTCGAGATCCTCCGCCGCCTCCCCGTCCGCTCCGTGTGCCGCTT CAAGCGCGTCTGCCGGTCCTGGCGCAACCTCATCGCCGACCGTGAGCACCGCAAGAAGCT GCCGCAGACGCTGTCCGGCTTCTTCTACAAAAGCAGCAGCGGCGAGCGCTGCCCTTGCTC GGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGCCTCTCATCTACCCGTCATTCTC CTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACTGCTGCAATGGCCTCCTCCTCTG CCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATGAGATTGAGCCGTTCCATTATGC CGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGCCGGATGCCGACTGGGCTAATGG CGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAATCTCCTCGCATTTCCATGTTCT TGAGTATGTGGAGGCTGAATATGAAGATGTCACGGGGGTTGAGATCTACTCTTCCGAAAC TGGGTTGTGGACTCTTCATGTGAGTGGATGGGGCGATGATGTGTTTCTAAGGCATTGGGC CAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATTCTGCTACGTGTGCTGCTGAGAT TGCGGTGGTTGACATGGAGGGGAAGAAATGGAGGACCATTGCTATGCCGGAGCCTGAAGG TGATACTGGCATAATTCATCAAACTCAGGGTCGCCTATGTGCTTTTAATGTTGATCCAGA TGACATCTTCAAACTGTCAATTTGGATTCTTGAAGATTATGATACAGATAATTGGATATT AAAGCACACCGTTAGCTCCTTGAGGCTGTTTGGAGGGATGAAATATCGGTTTGGATTTGA CTACCAAATAATTGCAGTTCATCCGGAATGTAATTTGATCTTCTTTGTTTATGGATGGGA CAAAACGTTGATGGCATATGAAATGGATCGCAAGGAAGTTCGTGCTATACGCAATCTCGG ACATGACTCCTTTGAGCCATATCTACCATATGTTCCACTCTTTAATGAGTCATTAGCAGA TGGGTGCTAACGTGCAGAGTGTCGCTTCACTTCTATCACTGCAAAAACATCCTTTTGCAC CAAGGATAACCAAGCTAAGAGTGAGAAAAGCCAATCTCTGATATTTAATTAGGAAGTTCA GTTTGTACTAGAATGATGTCTTTTCCTTTGTGTTGTTTTGAGAATGCTGCTAAGTCTGAT GGTACGTAGTAAGTAAATTGGCTTTTGGAAAGTTTGTCATTGTTCTGAAGTGTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8398#0      ----------------------------TCGCCGCCGCTTCTAGGTCTTCTTCT---CGG 29
consensus_8398#1      GCAACGGCATTCCCACATCGGGGATGCGTCGCCGCCGCTTCTAGGTCTTCTTCTTCTCGG 60
                                                  **************************   ***

consensus_8398#0      TGACCGGCGAGGCAGCCGGCG--------CGGCTTTGCCGGCGAGGGCTATAGGTTGCCG 81
consensus_8398#1      TGACCGGCGAGGCAGCCGGCGGCCCGGCGCGGCTTTGCCGGCGAGGGCTGTAGGTTGCCG 120
                      *********************        ******************** **********

consensus_8398#0      GCACGTGCGACCTGCTCCGTAGCGAGCGCACGGGGGGCTGCCGTGACTGAGCAGCCGCAC 141
consensus_8398#1      GCGCGTGCGACGTGCTCCGCGGTGAGCGCACGGGGG-CTGCCGTGACCTAGCGGCCGCAC 179
                      ** ******** *******  * ************* **********  *** *******

consensus_8398#0      CGCGCGGCAATTAATGCTTCGTGCCTCCCAGTGAGCTGCCTTGATCGGCTGACACCCTCT 201
consensus_8398#1      CACGCGGCAATTAATGCTTCGTGCCTCCCAGTGAGCTGCCTTGATCGGCTGACACCCTCT 239
                      * **********************************************************

consensus_8398#0      CCGCAGCTTCACCCGAGATGGAGGATCTCCCCATGGGGCGGCGGAACCCGGCGGCCAGCC 261
consensus_8398#1      CCGCAGCTTCACCCGAGATGGAGGATCTCCCCATGGGGCGGCGGAACCCGGCGGCCAGCC 299
                      ************************************************************

consensus_8398#0      TCACCGACGACCTCGTCGTCGAGATCCTCCGCCGCCTCCCCGTCCGCTCCGTGTGCCGCT 321
consensus_8398#1      TCACCGACGACCTCGTCGTCGAGATCCTCCGCCGCCTCCCCGTCCGCTCCGTGTGCCGCT 359
                      ************************************************************

consensus_8398#0      TCAAGCGCGTCTGCCGGTCCTGGCGCAACCTCATCGCCGACCGTGAGCACCGCAAGAAGC 381
consensus_8398#1      TCAAGCGCGTCTGCCGGTCCTGGCGCAACCTCATCGCCGACCGTGAGCACCGCAAGAAGC 419
                      ************************************************************

consensus_8398#0      TGCCGCAGACGCTGTCCGGCTTCTTCTACAAAAGCATCAGCGGCGAGCGCTGCCCTTGCT 441
consensus_8398#1      TGCCGCAGACGCTGTCCGGCTTCTTCTACAAAAGCAGCAGCGGCGAGCGCTGCCCTTGCT 479
                      ************************************ ***********************

consensus_8398#0      CGGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGCCTCTCATCTACCCGTCATTCT 501
consensus_8398#1      CGGCGCACCACTTCACCAACGTCTCCGGGAAAGGGGTGCCTCTCATCTACCCGTCATTCT 539
                      ************************************************************

consensus_8398#0      CCTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACTGCTGCAATGGCCTCCTCCTCT 561
consensus_8398#1      CCTTCCTGCCCCAGTGCGACACGGTCGTCCCCTTGGACTGCTGCAATGGCCTCCTCCTCT 599
                      ************************************************************

consensus_8398#0      GCCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATGAGATTGAGCCGTTCCATTATG 621
consensus_8398#1      GCCGCTGCTTCCAGCCCGGGCCTAACAACAGCGATGATGAGATTGAGCCGTTCCATTATG 659
                      ************************************************************

consensus_8398#0      CCGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGCCGGATGCCGACTGGGCTAATG 681
consensus_8398#1      CCGTGTGCAATCCTGCGACCAAGGAATGGGTGATGTTGCCGGATGCCGACTGGGCTAATG 719
                      ************************************************************

consensus_8398#0      GCGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAATCTCCTCGCATTTCCATGTTC 741
consensus_8398#1      GCGAGACCCGCATTGCCTGCCTGTGTTTCGACCCAGCAATCTCCTCGCATTTCCATGTTC 779
                      ************************************************************

consensus_8398#0      TTGAGTATGTGGAGGCTGAATATGAAGATGTCACGGGGGTTGAGATCTACTCTTCCGAAA 801
consensus_8398#1      TTGAGTATGTGGAGGCTGAATATGAAGATGTCACGGGGGTTGAGATCTACTCTTCCGAAA 839
                      ************************************************************

consensus_8398#0      CTGGGTTGTGGACTCTTCATGTGAGTGGATGGGGCGATGATGTGTTTCTAAGGCATTGGG 861
consensus_8398#1      CTGGGTTGTGGACTCTTCATGTGAGTGGATGGGGCGATGATGTGTTTCTAAGGCATTGGG 899
                      ************************************************************

consensus_8398#0      CCAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATTCTGCTACGTGTGCTGCTGAGA 921
consensus_8398#1      CCAATCCGAGAAGTGTTTTCCTTAATGGTTTTCTGCATTCTGCTACGTGTGCTGCTGAGA 959
                      ************************************************************

consensus_8398#0      TTGCGGTGGTTGACATGGAGGGGAAGAAATGGAGGACCATTGCTATGCCGGAGCCTGAAG 981
consensus_8398#1      TTGCGGTGGTTGACATGGAGGGGAAGAAATGGAGGACCATTGCTATGCCGGAGCCTGAAG 1019
                      ************************************************************

consensus_8398#0      GTGATACTGGCATAATTCATCAAACTCAGGGTCGCCTATGTGCTTTTAATGTTGATCCAG 1041
consensus_8398#1      GTGATACTGGCATAATTCATCAAACTCAGGGTCGCCTATGTGCTTTTAATGTTGATCCAG 1079
                      ************************************************************

consensus_8398#0      ATGACATCTTCAAACTGTCAATTTGGATTCTTGAAGATTATGATACAGATAATTGGATAT 1101
consensus_8398#1      ATGACATCTTCAAACTGTCAATTTGGATTCTTGAAGATTATGATACAGATAATTGGATAT 1139
                      ************************************************************

consensus_8398#0      TAAAGCACACCGTTAGCTCCTTGAGGCTGTTTGGAGGGAAGAAATATCAGTTTGGATTTG 1161
consensus_8398#1      TAAAGCACACCGTTAGCTCCTTGAGGCTGTTTGGAGGGATGAAATATCGGTTTGGATTTG 1199
                      *************************************** ******** ***********

consensus_8398#0      ACTACCAAATAATTGTGGTTCATCCAGAATGTAATTTGATATTCTTTGTTTATGGATGGG 1221
consensus_8398#1      ACTACCAAATAATTGCAGTTCATCCGGAATGTAATTTGATCTTCTTTGTTTATGGATGGG 1259
                      ***************  ******** ************** *******************

consensus_8398#0      ACAAAACGTTGATGGCATATGAAATGGATCGCAAGGAAGTGCGTGTTATACGCAATCTTG 1281
consensus_8398#1      ACAAAACGTTGATGGCATATGAAATGGATCGCAAGGAAGTTCGTGCTATACGCAATCTCG 1319
                      **************************************** **** ************ *

consensus_8398#0      GACATGACTCCTCGGATCCATATCTACCGTATGTTCCACTCTTTTATGAGTCATTTGCAG 1341
consensus_8398#1      GACATGACTCCTTTGAGCCATATCTACCATATGTTCCACTCTTTAATGAGTCATTAGCAG 1379
                      ************  ** *********** *************** ********** ****

consensus_8398#0      ATGGGCGCTAACATGCAGAGCGTCGGCTCCACTTTTACTACTGCGAAAACATCCTTTTGC 1401
consensus_8398#1      ATGGGTGCTAACGTGCAGAGTGTCG-CTTCACTTCTATCACTGCAAAAACATCCTTTTGC 1438
                      ***** ****** ******* **** ** ***** **  ***** ***************

consensus_8398#0      ACTA-GGAGAACCAAGCTTAGAGTGGGCAGAAAGCCATTCTCTAGTACAAGGATTTAGCA 1460
consensus_8398#1      ACCAAGGATAACCAAGCTAAGAGTGAG--AAAAGCCAATCTCTGATATTT--AATTAGGA 1494
                      ** * *** ********* ****** *   ******* *****  **     * **** *

consensus_8398#0      AGGTCTGTTTTATTGTACTTGAATTAAGAAGTCAGATGGTAGTACTAGTACTATGTAGAT 1520
consensus_8398#1      AGTTCAGTTT----GTACTAGAAT---GATGTCT-----TTTCCTTTGTGTTGTTTTGA- 1541
                      ** ** ****    ***** ****   ** ***      *     * **  * * * ** 

consensus_8398#0      TGTCTTTTGGAAGGTTTGTCCTGTTACTCTGAAGGTTGTCTTGTTTTATTCTACTGGTGT 1580
consensus_8398#1      -GAATGCTGCTAAGTCTG--ATGGTACGTAGTAAGTAAATTGGCTTT--TGGAAAGTTTG 1596
                       *  *  **  * ** **   ** ***   * * **    * * ***  *  *  * *  

consensus_8398#0      TTACCCTATTATAGTGAAGCTTTGATGTAATATGCTAACACTGAAAGGTCTTTTGACTGT 1640
consensus_8398#1      TCATTGTTCTGAAGTGTAT----------------------------------------- 1615
                      * *   *  *  **** *                                          

consensus_8398#0      ATCAGCACAATCTGTTTAGGGTACTGTGACAGTGTGACTAATGTTTTGAATGTTGGAGCA 1700
consensus_8398#1      ------------------------------------------------------------
                                                                                  

consensus_8398#0      CACCCACATATGTACTTCCTGTTTTAAAAAAAAAAAAAAAAAAAAAAA 1748
consensus_8398#1      ------------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)