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Oryza sativa
cluster # 8404 cluster # 8404       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8404#0 length = 673 sequences # 5  

consensusID : consensus_8404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 673
fasta sequence
                              [AGACAAGGGGGAACCAACAGTGCAGTCACACTCTCGCACACTATCTGCATAAGAAGGGGATAAGCTACCTGATTCATGCCATCAGTTTCAGTTGCATCCAGCATGAGCAAGCTCAAGTTCTTGGTCACTGTCGTCCTCGTGATCCTGCTACTGTTCGATTCATCGTCTTCAGGGCAAGCTGAGACAGCATATACCAATTATGAAGTGACTTCTAAAGTGAAAGAGAGAATTCAGAAACATAGCAGGAGGGTTCTGACAGATGTTCAGGACTATGACTATGGAGGACCCAACCCTAGACATGAACCACGTAAGAAGCCTGGAAATGGACACTAATCGCCTCTTCTCCACACTGAAACCTTGACAAAGATAAGTCAGATACTCAGATGATCCCAAATGCTACAATCACCAGACCACTATCTTACTGTAATGTACTAGAATTAAGCAGAACTGTTAGGTACTATTGTGTCGTTAATTACCTTGTAATATGTTGGTCAGGTGCATGGAGTTCAGGTCATTTTAGACAGTACCTGCGTGTATTCAGGTGTGTGCTTATATAACTAGCAACTGGTAAAATACAACTACTGAGGACATTTTGTAAGTTGAGACTTCAGATATGTGAGCTATCTTGTTTGCAAATCTTCGGTTGNGGTTTGAATAAAACGAGCATTTTGGC]

[-] EMBL CA760587             [AGACAAGGGGGAACCAACAGTGCAGTCGCACTCTCGCACACTATNTGCATAAGAAGGGGATAAGCTACCTGATTCATGCCATCAGTNTCAGTGNCATCCAGCATGAGCAAGCTCAAGTTCTTGGTCACTGTCGTCCTCGTGATCCTGCTACTGTTCGATTCATCGTCTTCAGGGCAAGCTGAGACAGCATATACCAATTATGAAGTGACTTCTAAAGTGAAAGAGAGAATTCAGAAACATAGCAGGAGGGTTCTGACAGATGTTCAGGACTATGACTATGGAGGACCCAACCCTAGACATGAACCACGTAAGAAGCCTGGAAATGGACACTAATCGCCTCTTCTCCACACTGAAACCTTGACAAAGATAAGTCAGATACTCAGATGATCCCAAATGCTACAATCACCAGACCACTATCTTACTGTAATGTACTAGAATTAAGCAGAACTGTTGGGTACTATTGTGTCGTTAATTACCTTGTAATATGTTGGTCAGGTGCATGGAGTTCAGGTCATTTTAGACAGTACCTGCGTGTATTCAGGTGTGTGCTTATATAACTAGCAACTGGTAAAATACAACTACTGAGGACATTTTGTAAGTTGAGACTTTAGATATGTGAGCTATCTTGTTTGCAAAaaaa                                 ]
[+] EMBL CA763889             [                  AGTGCAGTCACACTCTCGCACACTATCTGCATAAGAAGGGGATAAGCTACCTGATTCATGCCATCAGTTTCAGTTGCATCCAGCATGAGCAGGCTCAAGTTCTTGGTCACTGTCGTCCTCGTGATCCTGCTACTGTTCGATTCATCGTCTTCAGGGCAAGCTGAGACAGCATATACCAATTATGAAGTGACTTCTAAAGTGAAAGAGAGAATTCAGAAACATAGCAGGAGGGTTCTGACAGATGTTCAGGACTATGACTATGGAGGACCCAACCCTAGACATGAACCACGTAAGAAGCCTGGAAATGGACACTAATCGCCTCTTCTCCACACTGAAACCTTGACAAAGATAAGTCAGATACTCAGATGATCCCAAATGCTACAATCACCAGACCACTATCTTACTGTAATGTACTAGAATTAAGCAGAACTGTTAGGTACTATTGTGTCGTTAATTACCTTGTAATATGTTGGTCAGGTGCATGGAGTTCAGGTCATTTTAGACAGTACCTGCGTGTATTCAGGTGTGTGCTTATATAACTAGCAACTGGTAAAATACAACTACTGAGGACATTTTGTAAGNTGAGACTTCAGATATGTGAGCTATCTTGGTTGCAAATCTTCGGTTGNGGTTTGAATAAAACGAGCATTTTGGC]
[+] EMBL CB097215             [                  AGTGCAGTCACACTCTCGCACACTATCTGCATAAGAAGGGGATAAGCTACCTGATTCATGCCATCAGTTTCAGTTGCAT CAGCATGAGCAAGCTCAAGTTCTTGGTCACTGTCGTCCTCGTGATCCTGCTACTGTTCGATTCATCGTCTTCAGGGCAAGCTGAGACAGCATATACCAATTATGAAGTGACTTCTAAAGTGAAAGAGAGAATTCAGAAACATAGCAGGAGGGTTCTGACAGATGTTCAGGACTATGACTATGGAGGACCCAACCCTAGGCATGAACCACGTAAGAAGCCTGGAAATGGACACTAATCGCCTCTTCTCCACACTGAAACCTTGACAAAGATAAGTCAGATACTCAGATGATCCCAAATGCTACAATCACCAGACCACTATCTTACTGTAATGTACTAGAATTAAGCAGAACTGTTAGGTACTATTGTGTCGTTAATTACCTTGTAATATGTTGGTCAGGTGCATGGAGTTCAGGTCATTTTAGACAGTACCTGCGTGTATTCAGGTGTGTGCTTATATAACTAGCAACTGGTAAAATACAACTACTGAGGACATTT                                                                                ]
[+] EMBL AK062488             [                    TGCAGTCACACTCTCGCACACTATCTGCATAAGAAGGGGATAAGCTACCTGATTCATGCCATCAGTTTCAGTTGCATCCAGCATGAGCAAGCTCAAGTTCTTGGTCACTGTCGTCCTCGTGATCCTGCTACTGTTCGATTCATCGTCTTCAGGGCAAGCTGAGACAGCATATACCAATTATGAAGTGACTTCTAAAGTGAAAGAGAGAATTCAGAAACATAGCAGGAGGGTTCTGACAGATGTTCAGGACTATGACTATGGAGGACCCAACCCTAGACATGAACCACGTAAGAAGCCTGGAAATGGACACTAATCGCCTCTTCTCCACACTGAAACCTTGACAAAGATAAGTCAGATACTCAGATGATCCCAAATGCTACAATCACCAGACCACTATCTTACTGTAATGTACTAGAATTAAGCAGAACTGTTAGGTACTATTGTGTCGTTAATTACCTTGTAATATGTTGGTCAGGTGCATGGAGTTCAGGTCATTTTAGACAGTACCTGCGTGTATTCAGGTGTGTGCTTATATAACTAGCAACTGGTAAAATACAACTACTGAG                                                                                       ]
[-] EMBL CB967047             [                                                                                                                                                                                                                                                  CAGGAGGGTTCTGACAGATGTTCAGGACTATGACTATGGAGGACCCAACCCTAGACATGAACCACGTAAGAAGCCTGGAAATGGACACTAATCGCCTCTTCTCCACACTGAAACCTTGACAAAGATAAGTCAGATACTCAGATGATCCCAAATGCTACAATCACCAGACCACTATCTTACTGTAATGTACTAGAATTAAGCAGAACTGTTAGGTACTATTGTGTCGTTAATTACCTTGTAATATGTTGGTCAGGTGCATGGAGTTCAGGTCATTTTAGACAGTACCTGCGTGTATTCAGGTGTGTGCTTATATAACTAGCAACTGGTAAAATACAACTACTGAGGACATTTTGTAAGTTGAGACTTCAGATATGTGAGCTATCTTGTTTGCAAATCTTCGGTTGTGTTTTGAATAAAACGAGCATTTT   ]


>consensus_8404#0 AGACAAGGGGGAACCAACAGTGCAGTCACACTCTCGCACACTATCTGCATAAGAAGGGGA TAAGCTACCTGATTCATGCCATCAGTTTCAGTTGCATCCAGCATGAGCAAGCTCAAGTTC TTGGTCACTGTCGTCCTCGTGATCCTGCTACTGTTCGATTCATCGTCTTCAGGGCAAGCT GAGACAGCATATACCAATTATGAAGTGACTTCTAAAGTGAAAGAGAGAATTCAGAAACAT AGCAGGAGGGTTCTGACAGATGTTCAGGACTATGACTATGGAGGACCCAACCCTAGACAT GAACCACGTAAGAAGCCTGGAAATGGACACTAATCGCCTCTTCTCCACACTGAAACCTTG ACAAAGATAAGTCAGATACTCAGATGATCCCAAATGCTACAATCACCAGACCACTATCTT ACTGTAATGTACTAGAATTAAGCAGAACTGTTAGGTACTATTGTGTCGTTAATTACCTTG TAATATGTTGGTCAGGTGCATGGAGTTCAGGTCATTTTAGACAGTACCTGCGTGTATTCA GGTGTGTGCTTATATAACTAGCAACTGGTAAAATACAACTACTGAGGACATTTTGTAAGT TGAGACTTCAGATATGTGAGCTATCTTGTTTGCAAATCTTCGGTTGNGGTTTGAATAAAA CGAGCATTTTGGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)