These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1254 fasta sequence [TTCCGAGCCGGCCGCCAATTCGTGGTTCCTCCTCCTCACGGGCGGCGGCGACGGCGGCGACTACGGCGATGCGGCTGCTCTCCGGCGCCTCTGCTTCCCGAATCCCCTGCCCCCTCCTCTCACTCGCCCGCGCGAGGGCAAGATGCTTGCCGGTCCCCGCCTCTGCCACCGCGTGCCGAGCGGCCTCCTCGTCAGCCGCGGCGGCCGCGGGCGACGGCGGCGCGCTGAAGCCGTGGTTGTTCGTCGGGCTCGGGAACCCCGGGAAAGTGTACCAAGGGACTCTCCACAACGTTGGATTCGAGATGATTGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCAAGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGGTGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTATTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTGCACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGATTATTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTTAAATACA-GGGAAGTTAGAGACGTCACACTACATGCGTACTTCTGTTCCTTACATTTGTAGCCTTGTATTGATTTCAAAAAACAATTGTAGCACTGTAATTTGGTGACCTGGTAGGGGGAGAGAGAGAGAGAAGCCTTTTTGTCTTGGTAATCTATACTTTGGAAATCGTCAGCATACTGTTAAACAGGATTTCAGTGTTCCACAGTACCTTGTCTCACTTTCTATATGTATATACAAGTGTTGATTAAGTAAT] [+] EMBL AK066034 [TTCCGAGCCGGCCGCCAATTCGTGGTTCCTCCTCCTCACGGGCGGCGGCGACGGCGGCGACTACGGCGATGCGGCTGCTCTCCGGCGCCTCTGCTTCCCGAATCCCCTGCCCCCTCCTCTCACTCGCCCGCGCGAGGGCAAGATGCTTGCCGGTCCCCGCCTCTGCCACCGCGTGCCGAGCGGCCTCCTCGTCAGCCGCGGCGGCCGCGGGCGACGGCGGCGCGCTGAAGCCGTGGTTGTTCGTCGGGCTCGGGAACCCCGGGAAAGTGTACCAAGGGACTCTCCACAACGTTGGATTCGAGATGATTGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCAAGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGGTGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGTGGGATTCAACAAGAGCGCAACTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTATTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTGCACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGATTATTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTTAAATACA GGGAAGTTAGAGACGTCACACTACATGCGTACTTCTGTTCCTTACATTTGTAGCCTTGTATTGATTTCAAAAAACAATTGTAGCACTGTAATTTGGTGACCTGGTAGGGGGAGAGAGAGAGAGAAGCCTTTTTGTCTTGGTAATCTATACTTTGGAAATCGTCAGCATACTGTTAAACAGGATT ] [+] EMBL AK099894 [ GTTCCTCCTCCTCACGGGCGGCGGCGACGGCGGCGACTACGGCGATGCGGCTGCTCTCCGGCGCCTCTGCTTCCCGAATCCCCTGCCCCCTCCTCTCACTCGCCCGCGCGAGGGCAAGATGCTTGCCGGTCCCCGCCTCTGCCACCGCGTGCCGAGCGGCCTCCTCGTCAGCCGCGGCGGCCGCGGGCGACGGCGGCGCGCTGAAGCCGTGGTTGTTCGTCGGGCTCGGGAACCCCGGGAAAGTGTACCAAGGGACTCGCCACAACGTTGGATTCGAGATGATTGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCAAGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGGTGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTATTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTGCACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGATTATTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTTAAATACA GGGAAGTTAGAGACGTCACACTACATGCGTACTTCTGTTCCTTACATTTGTAGCCTTGTATTGATTTCAAAAAACAATTGTAGCACTGTAATTTGGTGACCTGGTAGGGGGAGAGAGAGAGAGAAGCCTTTTTGTCTTGGTAATCTATACTTTGGAAATCGTCAGCATACTGTTAAACAGGATTTCAGTGTTCCACAGTACCTTGTCTCACTTTCTATATGTATATACAAGTGTTGATTAAGTAAT] [+] EMBL CA766005 [ CGTTGGATTCGAGATGATTGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCAAGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTATTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTGCACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGGNTATTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTT AATACAGGGGAAGTTAGAGACGTCACACTACATGCGTACTTCTGGTCCTTACATTTGGAGCCCTGGATTGATTTC AAAAACAATTGGAGCACTGGAANTTGGTGACCT ] consensusID : consensus_8427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 788 fasta sequence [TAATATTGACAATTAATATAATTCTTTTAACTGATACATCTTGTGTTGAAAGAAGCCATGCTATCTGGATTCCCAGAGCTGTACTTTGTTCCTCAAGTCTTGCACATTACCTTTTCAACTCTAACAATATTTATGCGGTTTTCATAAATATTACCTATAAACAAATGCTATTTGTTTAAGATACTCTATGCTTGAATATTAAACATGAGCGGGTGCATATACTTATTTGAAATTCTGAAGGTAGTGCTATCAAACATTCATAACAGAAAATAATATTTAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTAAGTATACTGATTCCAAAACAACCTTCACTACTAGTTGTTCCTTCTTTTTTTTACCTTTTTCGTTTGACAAATCGAGTTATACAGGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGTATAGCGCTTCTCTCCTTTTTCAACTCAGNTACCATGTCTGAAAATATTCNTTGCGGNGATATCTTGCAGGCATTGGACGACCACCTGGGAAGANGGGATCCTGNCAANTTTGGTCTCCGACCATTTAACAGAAAAGACAGGGAAGAGGGTTTAATTANAATGCTTTC] [+] EMBL CB096659 [TAATATTGACAATTAATATAATTCTTTTAACTGATACATCTTGTGTTGAAAGAAGCCATGCTATCTGGATTCCCAGAGCTGTACTTTGTTCCTCAAGTCTTGCACATTACCTTTTCAACTCTAACAATATTTATGCGGTTTTCATAAATATTACCTATAAACAAATGCTATTTGTTTAAGATACTCTATGCTTGAATATTAAACATGAGCGGGTGCATATACTTATTTGAAATTCTGAAGGTAGTGCTATCAAACATTCATAACAGAAAATAATATTTAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTAAGTATACTGATTCCAAAACAACCTTCACTACTAGTTGTTCCTTCTTTTTTTTACCTTTTTCGTTTGACAAATCGAGTTATACAGGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGTATAGCGCTTCTCTCCTTTTTCAACTCAGNTACCATGTCTGAAAATATTCNTTGCGGNGATATCTTGCAGGCATTGGACGACCACCTGGGAAGANGGGATCCTGNCAANTTTGGTCTCCGACCATTTAACAGAAAAGACAGGGAAGAGGGTTTAATTANAATGCTTTC] consensusID : consensus_8427#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [TTAATCAAGTTCTTGTGGTAAAGTGCTATCCTCGAGTTTCTGGTTGCTGTTTTTTTTAACAGATTGCTATATTTTGATTCTTCATTCATTTTTTATTCTCTGCAGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATNNNGGCTTNNNNNCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTNNNNNNNGCACAGTCCTCTNNNNTGTTGANNNNNTGNNNNNNNGTTCAATTTATTCTTATAACATAANNNNNCTTATGTNNNNNNTGAAT] [+] EMBL CF197250 [TTAATCAAGTTCTTGTGGTAAAGTGCTATCCTCGAGTTTCTGGTTGCTGTTTTTTTTAACAGATTGCTATATTTTGATTCTTCATTCATTTTTTATTCTCTGCAGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATNNNGGCTTNNNNNCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTNNNNNNNGCACAGTCCTCTNNNNTGTTGANNNNNTGNNNNNNNGTTCAATTTATTCTTATAACATAANNNNNCTTATGTNNNNNNTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8427#0 TTCCGAGCCGGCCGCCAATTCGTGGTTCCTCCTCCTCACGGGCGGCGGCGACGGCGGCGA 60 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 --TAATATTGACAATTAATATAATTCTTTTAACTGATACATCTTGTGTTGAAAGAAGCCA 58 consensus_8427#0 CTACGGCGATGCGGCTGCTCTCCGGCGC-CTCTGCTTCCCGAATCCCCTGCCCCCTCCTC 119 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 T----GCTATCTGGATTCCCAGAGCTGTACTTTGTTCCTCAAGTCTTGCACATTACCTTT 114 consensus_8427#0 TCACTCGCCCGCGCGAGGGCAAGATGCTTGCCGGTCCCCGCCTCTGCCACCGCGTGCCGA 179 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 TCA---ACTCTAACAATATTTATGCGGTTTTCATAAATATTACCTATAAACAAATGCTAT 171 consensus_8427#0 GCGGCCTCCTCGTCAGCCGCGGCGGCCGCGGGCGACGGCGGCGCGCTGAAGCCGTGGTTG 239 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 TTGTTTAAGATACTCTATGCTTGAATATTAAACATGAGCGG-GTGCATATACTTATTTGA 230 consensus_8427#0 TTCGTCGGGCTCGGGAACCCCGGGAAAGTGTACCAAGGGACTCTCCACAACGTTGGATTC 299 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 AATTCTGAAGGTAGTGCTATCAAACATTCATAACAGAAAATAATATTTAG-GTCGTATTG 289 consensus_8427#0 GAGATGAT--TGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCA 357 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 GAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTG 349 consensus_8427#0 AGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAA 417 consensus_8427#2 ------------------------TTAATCAAGTTCTTGTGGTAAAGTGCTATCCTCGAG 36 consensus_8427#1 TAAGTATACTGATTCCAAAACAACCTTCACTACTAGTTGTTCCTTCTTTTTTTTACCTTT 409 * * * * consensus_8427#0 CTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCAC 477 consensus_8427#2 --TTTCTGGTTGC---TGTTTTTTTTAACAGATTGCTA-TATTTTGATTCTTCATTCATT 90 consensus_8427#1 TTCGTTTGACAAATCGAGTTATACAGGTGGGGCAGTTGGTCTCATATTTCAAGATACCAC 469 * ** * * * * * * * * *** ** * consensus_8427#0 TTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTAC 537 consensus_8427#2 TT--TTATTCTCTGCAGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTAC 148 consensus_8427#1 TTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTAC 529 ** * * *** ******************************************** consensus_8427#0 TGCCGAAAGGTGGACATGGCGGTCATAATGGGGTGAGAAGCATTATCAACCATTTGAAGC 597 consensus_8427#2 TGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGC 208 consensus_8427#1 TGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGC 589 ******************************** *************************** consensus_8427#0 AGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATC 657 consensus_8427#2 AGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATC 268 consensus_8427#1 AGAACCGTGATTTCCCACGTCTAAGAATTGGTATAGCGCTTCTCTCC------------T 637 ******************************* ** * * * * consensus_8427#0 CTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTT 717 consensus_8427#2 CTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTT 328 consensus_8427#1 TTTTCAACTCAGNT-----ACCATGT--CTGAAAATA-----------------TTCNTT 673 * *** * * * ***** * * ***** * * ** consensus_8427#0 TCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAA 777 consensus_8427#2 TCCATNNNGGCTTNNNNNCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAA 388 consensus_8427#1 GCGGNGATATCTTGCAGGCATT--GGACGAC--CACCTGGGAAG----ANGGGATCCTGN 725 * *** ** * * * * *** ** * * ** * consensus_8427#0 CTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTA 837 consensus_8427#2 CTTATGTNNNNNNNGCACAGTCCTCTNNNNTGTTGANNNNNTGNNNNNNNGTTCAATTTA 448 consensus_8427#1 CAANTTTGGTCTCCGACCATTTAACAGAAAAGACAGGGAAGAGGGTTTAATTANAATGCT 785 * * * * ** * * * * * *** consensus_8427#0 TTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTG 897 consensus_8427#2 TTCTTATAACATAANNNNNCTTATGTNNNNNNTGAAT----------------------- 485 consensus_8427#1 TTC--------------------------------------------------------- 788 *** consensus_8427#0 CACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGATTA 957 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 TTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTTAAATACAGGGAAGTTA 1017 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 GAGACGTCACACTACATGCGTACTTCTGTTCCTTACATTTGTAGCCTTGTATTGATTTCA 1077 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 AAAAACAATTGTAGCACTGTAATTTGGTGACCTGGTAGGGGGAGAGAGAGAGAGAAGCCT 1137 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 TTTTGTCTTGGTAATCTATACTTTGGAAATCGTCAGCATACTGTTAAACAGGATTTCAGT 1197 consensus_8427#2 ------------------------------------------------------------ consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 GTTCCACAGTACCTTGTCTCACTTTCTATATGTATATACAAGTGTTGATTAAGTAAT 1254 consensus_8427#2 --------------------------------------------------------- consensus_8427#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||