These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1039 fasta sequence [TGCGATTGATTTTGTAGTAAGCAACAGAGTAAATTAAGAAAGCTGTGACTGCAATAGTGGATGGCTCGACCGGCAGCTCGCCGCGGCGCAAGGCGCAGCCGC-GCCCGCGGCCT-CCTGCTCCTCGCCGCCGCCGCCGCCGTGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGGTGAGGAGGAGCGCCACCAGCAGCAGCAGCAGCAGCCGGGAGGGACGTTCGAGTTCAACCTGCCTGGCCATGGCAACGTCAAGGCCTCGTGGAGCGTGGCCGACGACGAGGAGAGCCGGTGGCTCGACCGCTTGGCCGCCGACGCCGAGTCGTCGTCGTCCTCAGCCTCGGCGGCGGGCGGCGGCGGCGGCCACCGTATCCCCTTCGGCGACGACAGCGTCAAGTTCGGCAGCGACGCGTACGAGTTCATCGCCGACCTGCTCAGGCAAGGCACCGACGACGGCGAGGGTGAGAAGCCGACGGGTTACTGGGAGAAGGTTGACGAGGAGGGGAGCCGGATGCTGGACCGCATCGCCGCGAACGCGAGACACCGGGCAGAGGCCAACGGCGACGACGA---CATTGGTGGCTTTGTTCACAACGTCTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTCTCATGTCGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTGCTACTAAA-TTGATGTGGGTTTTTATTCAGGCATGATTAGAAGACAGTACTAGCATTTCACAGGATTTTAACTACAATAAGTATCT] [+] EMBL AK107765 [TGCGATTGATTTTGTAGTAAGCAACAGAGTAAATTAAGAAAGCTGTGACTGCAATAGTGGATGGCTCGACCGGCAGCTCGCCGCGGCGCAAGGCGCAGCCGC GCCCGCGGCCT CCTGCTCCTCGCCGCCGCCGCCGCCGTGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGGTGAGGAGGAGCGCCACCAGCAGCAGCAGCAGCAGCCGGGAGGGACGTTCGAGTTCAACCTGCCTGGCCATGGCAACGTCAAGGCCTCGTGGAGCGTGGCCGACGACGAGGAGAGCCGGTGGCTCGACCGCTTGGCCGCCGACGCCGAGTCGTCGTCGTCCTCAGCCTCGGCGGCGGGCGGCGGCGGCGGCCACCGTATCCCCTTCGGCGACGACAGCGTCAAGTTCGGCAGCGACGCGTACGAGTTCATCGCCGACCTGCTCAGGCAAGGCACCGACGACGGCGAGGGTGAGAAGCCGACGGGTTACTGGGAGAAGGTTGACGAGGAGGGGAGCCGGATGCTGGACCGCATCGCCGCGAACGCGAGACACCGGGCAGAGGCCAACGGCGACGACGA CATTGGTGGCTTTGTTCACAACGTCTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTCTCATGTCGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTGCTACTAAA TTGATGTGGGTTTTTATTCAGGCATGATTAGAAGACAGTACTAGCATTTCACAGGATTTTAACTACAATAAGTATCT] [+] EMBL AU077604 [ AGTAAGCAACAGAGTAAATTAAGAAAGCTGTGACTGCAATAGTGGATGGCTCGACCGGCAGCTCGCCGCGGCGCAAGGCGCAG CGCNGCCCGCGGCCTGCCTGCTCCTNGCCGCCGCCGCCGCCGTGGC GTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGGTGAGGAGGAGCGCCACCAGCAGCAGCAGCAGCAGCCGGGAGGGACGTTCGAGTTCAACCTGCCTGGCCATGGCAACGTCAAGGCCTCGTGGAGCGTGGCCGACGACGAGGAGAGCCGGTGGCTCGACCGCTTGGCCGCCGACGCCGAGTCGTCGTCGTCCTCAGCCTCGGCGGCGGGNGGCGGCGGCGGCCACCGTATCCCCTTCGGCGACGACAGCGTCAAGTTCGGCAGCGACGCGTACGAGTTCATCGCCGACCTGCTCAGGCAA ] [+] EMBL BI795454 [ GCTGGACCGCATC CC CGAACGCGAGACACCGGGCAGAGGCCAACGGCGACGACGACAGCATTGGTGGCTTTGTGCACAACGTCTTCTCTGGCAAGTCCAAGCAGCATGGCGAGGAGCCGTCTCATGTTGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGC AGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCAC ATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTC ATTTGCTTGCTACTAAACTTGATGTGGGTTTTTATTCAaaaaa ] consensusID : consensus_8428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [GACGACGACAGCATTGGTGGCTTTGTTCACAACGTCTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCNTCTCATGTCGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTNNTACTAAATTGATGTGGGTTTTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU077605 [GACGACGACAGCATTGGTGGCTTTGTTCACAACGTCTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCNTCTCATGTCGAGAGTGACAAGGAGTTCAGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAATCTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTNNTACTAAATTGATGTGGGTTTTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8428#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [ACGACAGCATTGGTGGCTTTGTTCACAACGTNTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTNTCATGTCGAGAGTGACAAGGAGTTCAGTANCAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAANAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAANAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCNCAATCTGGAACGAGTGAAACTTGCNCAATCATATCNCTGTGATATTTCAATTTGCTTGCTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172708 [ACGACAGCATTGGTGGCTTTGTTCACAACGTNTTCTCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTNTCATGTCGAGAGTGACAAGGAGTTCAGTANCAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACTTGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGCCTATCTACTAAAGCAANAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCTGTCAAGCTGAANAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCNCAATCTGGAACGAGTGAAACTTGCNCAATCATATCNCTGTGATATTTCAATTTGCTTGCTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8428#1 ------------------------------------------------------------ consensus_8428#2 ------------------------------------------------------------ consensus_8428#0 TGCGATTGATTTTGTAGTAAGCAACAGAGTAAATTAAGAAAGCTGTGACTGCAATAGTGG 60 consensus_8428#1 ------------------------------------------------------------ consensus_8428#2 ------------------------------------------------------------ consensus_8428#0 ATGGCTCGACCGGCAGCTCGCCGCGGCGCAAGGCGCAGCCGCGCCCGCGGCCTCCTGCTC 120 consensus_8428#1 ------------------------------------------------------------ consensus_8428#2 ------------------------------------------------------------ consensus_8428#0 CTCGCCGCCGCCGCCGCCGTGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGGTGAG 180 consensus_8428#1 ------------------------------------------------------------ consensus_8428#2 ------------------------------------------------------------ consensus_8428#0 GAGGAGCGCCACCAGCAGCAGCAGCAGCAGCCGGGAGGGACGTTCGAGTTCAACCTGCCT 240 consensus_8428#1 ------------------------------------------------------------ consensus_8428#2 ------------------------------------------------------------ consensus_8428#0 GGCCATGGCAACGTCAAGGCCTCGTGGAGCGTGGCCGACGACGAGGAGAGCCGGTGGCTC 300 consensus_8428#1 ------------------------------------------------------------ consensus_8428#2 ------------------------------------------------------------ consensus_8428#0 GACCGCTTGGCCGCCGACGCCGAGTCGTCGTCGTCCTCAGCCTCGGCGGCGGGCGGCGGC 360 consensus_8428#1 ------------------------------------------------------------ consensus_8428#2 ------------------------------------------------------------ consensus_8428#0 GGCGGCCACCGTATCCCCTTCGGCGACGACAGCGTCAAGTTCGGCAGCGACGCGTACGAG 420 consensus_8428#1 ------------------------------------------------------------ consensus_8428#2 ------------------------------------------------------------ consensus_8428#0 TTCATCGCCGACCTGCTCAGGCAAGGCACCGACGACGGCGAGGGTGAGAAGCCGACGGGT 480 consensus_8428#1 ------------------------------------------------------------ consensus_8428#2 ------------------------------------------------------------ consensus_8428#0 TACTGGGAGAAGGTTGACGAGGAGGGGAGCCGGATGCTGGACCGCATCGCCGCGAACGCG 540 consensus_8428#1 ---------------------GACGACGACAGCATTGGTGGCTTTGTTCACAACGTCTTC 39 consensus_8428#2 -------------------------ACGACAGCATTGGTGGCTTTGTTCACAACGTNTTC 35 consensus_8428#0 AGACACCGGGCAGAGGCCAACGGCGACGACGACATTGGTGGCTTTGTTCACAACGTCTTC 600 ***** ************************ *** consensus_8428#1 TCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCNTCTCATGTCGAGAGTGACAAGGAGTTC 99 consensus_8428#2 TCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTNTCATGTCGAGAGTGACAAGGAGTTC 95 consensus_8428#0 TCTGGCAAGTCCAAGCAGCACGGCGAGGAGCCGTCTCATGTCGAGAGTGACAAGGAGTTC 660 ******************************** * ************************* consensus_8428#1 AGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACT 159 consensus_8428#2 AGTANCAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACT 155 consensus_8428#0 AGTAACAGTAAGCTCCCTCCTCATGACGACATGTAGGAGAATGGTACTGCAACAAGTACT 720 **** ******************************************************* consensus_8428#1 TGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGC 219 consensus_8428#2 TGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGC 215 consensus_8428#0 TGGGGTGTGTTGATCCGTGGTGTCAACTGTCAACTGCTCAGCAGGAAGTTGGAAGGAAGC 780 ************************************************************ consensus_8428#1 CTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCT 279 consensus_8428#2 CTATCTACTAAAGCAANAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCT 275 consensus_8428#0 CTATCTACTAAAGCAAGAAGGTTAACTTGCATAAGCCTGAAGGTTTAGGAGGATCATGCT 840 **************** ******************************************* consensus_8428#1 GTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAAT 339 consensus_8428#2 GTCAAGCTGAANAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCNCAAT 335 consensus_8428#0 GTCAAGCTGAATAATTGTAGCAGTCTAGTTCATGTCTTAGCTTCCTCTAATTATCACAAT 900 *********** ******************************************* **** consensus_8428#1 CTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTNNTACTA 399 consensus_8428#2 CTGGAACGAGTGAAACTTGCNCAATCATATCNCTGTGATATTTCAATTTGCTTGCTNCTA 395 consensus_8428#0 CTGGAACGAGTGAAACTTGCACAATCATATCACTGTGATATTTCAATTTGCTTGCTACTA 960 ******************** ********** ********************* * *** consensus_8428#1 AATTGATGTGGGTTTTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- 450 consensus_8428#2 AA-------------------AAAAAAAAAAAAAAAAAAAAAAAAAA------------- 423 consensus_8428#0 AATTGATGTGGGTTTTTATTCAGGCATGATTAGAAGACAGTACTAGCATTTCACAGGATT 1020 ** * * * * ** * * * * consensus_8428#1 ------------------- consensus_8428#2 ------------------- consensus_8428#0 TTAACTACAATAAGTATCT 1039 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||