These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 988 fasta sequence [AGGTTTTTTAAAAATTGCAGTAATATCAAAGACCTAAACCAAGCTGAAAACGTCTGGATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACACAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCA-TGTAGTC-ATACATT-GC-TGCCCT-CCCGACGAGAA-CGC-TGTAGAATATGAAG-TCCCCCAAT-CCAAGCTTGAT-AGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCTCACCAAGCACCTCAACTGTGGAATTGGCATCCAACTCTGCACCAGATTGCGTCCTCTCCCTCCACAGCCGCCAATTGTGGCCATGGCGGGGATCCACCGGCCTTGCCTCGTAGACCAACGCCGGGATCTCCTCGTTCCTCTCTATGGCCAACTCAAGGAGCAGTCTGAGAGGGCCACCGGGCAGCAGCACGGCGGCGAGGTCGTAGACCGCCATGGCGACGAGCAGCGCCCAGGTGGTCCACTCCGGGAGCAGCGTGAACCAGAAGGCGGTGAGGACGGCGATGGCGACGAGCGCGGCCTGGTGGAGCGCGATGGGGACGGAGGCCGGGGA] [+] EMBL CB644501 [AGGTTTTTTAAAAATTGCAGTAATATCAAAGACCTAAACCAAGCTGAAAACGTCTGGATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACACAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCA TGTAGTC ATACATT GC TGCCCT CCCGACGAGAA CGC TGTAAAATATGAAG TCCCCCAAT CCAAGCTTGAT AGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCTCACCAAGCACCTCAACTGTGGAATTGGCATCCAACTCTGCACCAGATTGCGTCCTCTCCCTCCACAGCCGCCAATTGTGGCCATGGCGGGGATCCACCGGCCTTGCCTCGTAGACCAACGCCGGGATCTCCTCGTTCCTCTCTATG ] [-] EMBL CB644497 [ CAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCA TGTAGTC ATACATT GC TGCCCT CCCGACGAGAA CGC TGTAGAATATGAAG TCCCCCAAT CCAAGCTTGAT AGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCTCACCAAGCACCTCAACTGTGGAATTGGCATCCAACTCTGCACCAGATTGCGTCCTCTCCCTCCACAGCCGCCAATTGTGGCCATGGCGGGGATCCACCGGCCTTGCCTCGTAGACCAACGCCGGGATCTCCTCGTTCCTCTCTATGGCCAACTCAAGGAGCAGTCTGAGAGGGCCACCGGGCAGCAGCACGGCGGCGAGGTCGTAGACCGCCATGGCGACGAGCAGCGCCCAGGTGGTCCACTCCGGGAGCAGCGTGAACCAGAAGGCGGTGAGGACGGCGATGGCGACGAGCGCGGCCTGGTGGAGCGCGATGGGGACGGAGGCCGGGGA] [-] EMBL OSC114 [ ACTTGCATTGTAGNCAATACATTNGCTTGCCCTCCCCGACGAGAACCGCTTGTAGAATATGAAGNCCCCCCAATCCCAAGCTTGATAAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAA ] consensusID : consensus_8433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGNGAGCACATAAAACACAACACCAAGGGCGATCGANACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCATGTAGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTANAATATGAAGTCCCCCAATCCAAGCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCT] [-] EMBL AU101350 [TTTTTTTTTTTTTTTTTTTTTTTTTTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGNGAGCACATAAAACACAACACCAAGGGCGATCGANACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCATGTAGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTANAATATGAAGTCCCCCAATCCAAGCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCT] consensusID : consensus_8433#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [GGACAACCAGGTAAAAATTGCAGTAATATCAAAGACTGAAACCAAGCTGAAAACGTCTGGATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATGAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACACAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGAGTGATACCGAGCCCAGCAATGATGGCAAGATAACATGCATACACTGTCATGTAGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTAGAATATGAAGTCCCCCAATCCAAGCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCCCCCTTG] [-] EMBL CA766028 [GGACAACCAGGTAAAAATTGCAGTAATATCAAAGACTGAAACCAAGCTGAAAACGTCTGGATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATGAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACACAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGAGTGATACCGAGCCCAGCAATGATGGCAAGATAACATGCATACACTGTCATGTAGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTAGAATATGAAGTCCCCCAATCCAAGCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCCCCCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8433#0 ---AGGTTTTTTAAAAATTGCAGTAATATCAAAGACCTAAACCAAGCTGAAAACGTCTGG 57 consensus_8433#1 --------------------------------------------TTTTTTTTTTTTTTTT 16 consensus_8433#2 GGACAACCAGGTAAAAATTGCAGTAATATCAAAGACTGAAACCAAGCTGAAAACGTCTGG 60 * * * consensus_8433#0 ATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAA 117 consensus_8433#1 TTTTTTTTTTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAA 76 consensus_8433#2 ATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATGAATGCTAAAACATCACAA 120 ***** ******************************** ****************** consensus_8433#0 GATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACA 177 consensus_8433#1 GATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGNGAGCACATAAAACA 136 consensus_8433#2 GATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACA 180 ********************************************* ************** consensus_8433#0 CAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTA 237 consensus_8433#1 CAACACCAAGGGCGATCGANACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTA 196 consensus_8433#2 CAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTA 240 ******************* **************************************** consensus_8433#0 GCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCATGT 297 consensus_8433#1 GCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCATGT 256 consensus_8433#2 GCAGCAGAGTGATACCGAGCCCAGCAATGATGGCAAGATAACATGCATACACTGTCATGT 300 ******* ******************** ******************************* consensus_8433#0 AGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTAGAATATGAAGTCCCCCAATCCAA 357 consensus_8433#1 AGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTANAATATGAAGTCCCCCAATCCAA 316 consensus_8433#2 AGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTAGAATATGAAGTCCCCCAATCCAA 360 ************************************* ********************** consensus_8433#0 GCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGG 417 consensus_8433#1 GCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGG 376 consensus_8433#2 GCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGG 420 ************************************************************ consensus_8433#0 TTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCT 477 consensus_8433#1 TTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCT 436 consensus_8433#2 TTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCT 480 ************************************************************ consensus_8433#0 CCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCA 537 consensus_8433#1 CCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCA 496 consensus_8433#2 CCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCA 540 ************************************************************ consensus_8433#0 TCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATC 597 consensus_8433#1 TCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATC 556 consensus_8433#2 TCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATC 600 ************************************************************ consensus_8433#0 GGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCT 657 consensus_8433#1 GGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCT 616 consensus_8433#2 CCCCTTG----------------------------------------------------- 607 * consensus_8433#0 CACCAAGCACCTCAACTGTGGAATTGGCATCCAACTCTGCACCAGATTGCGTCCTCTCCC 717 consensus_8433#1 ------------------------------------------------------------ consensus_8433#2 ------------------------------------------------------------ consensus_8433#0 TCCACAGCCGCCAATTGTGGCCATGGCGGGGATCCACCGGCCTTGCCTCGTAGACCAACG 777 consensus_8433#1 ------------------------------------------------------------ consensus_8433#2 ------------------------------------------------------------ consensus_8433#0 CCGGGATCTCCTCGTTCCTCTCTATGGCCAACTCAAGGAGCAGTCTGAGAGGGCCACCGG 837 consensus_8433#1 ------------------------------------------------------------ consensus_8433#2 ------------------------------------------------------------ consensus_8433#0 GCAGCAGCACGGCGGCGAGGTCGTAGACCGCCATGGCGACGAGCAGCGCCCAGGTGGTCC 897 consensus_8433#1 ------------------------------------------------------------ consensus_8433#2 ------------------------------------------------------------ consensus_8433#0 ACTCCGGGAGCAGCGTGAACCAGAAGGCGGTGAGGACGGCGATGGCGACGAGCGCGGCCT 957 consensus_8433#1 ------------------------------------------------------------ consensus_8433#2 ------------------------------------------------------------ consensus_8433#0 GGTGGAGCGCGATGGGGACGGAGGCCGGGGA 988 consensus_8433#1 ------------------------------- consensus_8433#2 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||