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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 988 fasta sequence
[AGGTTTTTTAAAAATTGCAGTAATATCAAAGACCTAAACCAAGCTGAAAACGTCTGGATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACACAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCA-TGTAGTC-ATACATT-GC-TGCCCT-CCCGACGAGAA-CGC-TGTAGAATATGAAG-TCCCCCAAT-CCAAGCTTGAT-AGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCTCACCAAGCACCTCAACTGTGGAATTGGCATCCAACTCTGCACCAGATTGCGTCCTCTCCCTCCACAGCCGCCAATTGTGGCCATGGCGGGGATCCACCGGCCTTGCCTCGTAGACCAACGCCGGGATCTCCTCGTTCCTCTCTATGGCCAACTCAAGGAGCAGTCTGAGAGGGCCACCGGGCAGCAGCACGGCGGCGAGGTCGTAGACCGCCATGGCGACGAGCAGCGCCCAGGTGGTCCACTCCGGGAGCAGCGTGAACCAGAAGGCGGTGAGGACGGCGATGGCGACGAGCGCGGCCTGGTGGAGCGCGATGGGGACGGAGGCCGGGGA]
[+] EMBL CB644501 [AGGTTTTTTAAAAATTGCAGTAATATCAAAGACCTAAACCAAGCTGAAAACGTCTGGATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACACAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCA TGTAGTC ATACATT GC TGCCCT CCCGACGAGAA CGC TGTAAAATATGAAG TCCCCCAAT CCAAGCTTGAT AGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCTCACCAAGCACCTCAACTGTGGAATTGGCATCCAACTCTGCACCAGATTGCGTCCTCTCCCTCCACAGCCGCCAATTGTGGCCATGGCGGGGATCCACCGGCCTTGCCTCGTAGACCAACGCCGGGATCTCCTCGTTCCTCTCTATG ]
[-] EMBL CB644497 [ CAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCA TGTAGTC ATACATT GC TGCCCT CCCGACGAGAA CGC TGTAGAATATGAAG TCCCCCAAT CCAAGCTTGAT AGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCTCACCAAGCACCTCAACTGTGGAATTGGCATCCAACTCTGCACCAGATTGCGTCCTCTCCCTCCACAGCCGCCAATTGTGGCCATGGCGGGGATCCACCGGCCTTGCCTCGTAGACCAACGCCGGGATCTCCTCGTTCCTCTCTATGGCCAACTCAAGGAGCAGTCTGAGAGGGCCACCGGGCAGCAGCACGGCGGCGAGGTCGTAGACCGCCATGGCGACGAGCAGCGCCCAGGTGGTCCACTCCGGGAGCAGCGTGAACCAGAAGGCGGTGAGGACGGCGATGGCGACGAGCGCGGCCTGGTGGAGCGCGATGGGGACGGAGGCCGGGGA]
[-] EMBL OSC114 [ ACTTGCATTGTAGNCAATACATTNGCTTGCCCTCCCCGACGAGAACCGCTTGTAGAATATGAAGNCCCCCCAATCCCAAGCTTGATAAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAA ]
consensusID : consensus_8433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGNGAGCACATAAAACACAACACCAAGGGCGATCGANACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCATGTAGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTANAATATGAAGTCCCCCAATCCAAGCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCT]
[-] EMBL AU101350 [TTTTTTTTTTTTTTTTTTTTTTTTTTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGNGAGCACATAAAACACAACACCAAGGGCGATCGANACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCATGTAGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTANAATATGAAGTCCCCCAATCCAAGCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCGGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCT]
consensusID : consensus_8433#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[GGACAACCAGGTAAAAATTGCAGTAATATCAAAGACTGAAACCAAGCTGAAAACGTCTGGATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATGAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACACAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGAGTGATACCGAGCCCAGCAATGATGGCAAGATAACATGCATACACTGTCATGTAGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTAGAATATGAAGTCCCCCAATCCAAGCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCCCCCTTG]
[-] EMBL CA766028 [GGACAACCAGGTAAAAATTGCAGTAATATCAAAGACTGAAACCAAGCTGAAAACGTCTGGATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATGAATGCTAAAACATCACAAGATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACACAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTAGCAGCAGAGTGATACCGAGCCCAGCAATGATGGCAAGATAACATGCATACACTGTCATGTAGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTAGAATATGAAGTCCCCCAATCCAAGCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGGTTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCTCCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCATCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATCCCCCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8433#0 ---AGGTTTTTTAAAAATTGCAGTAATATCAAAGACCTAAACCAAGCTGAAAACGTCTGG 57
consensus_8433#1 --------------------------------------------TTTTTTTTTTTTTTTT 16
consensus_8433#2 GGACAACCAGGTAAAAATTGCAGTAATATCAAAGACTGAAACCAAGCTGAAAACGTCTGG 60
* * *
consensus_8433#0 ATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAA 117
consensus_8433#1 TTTTTTTTTTTACAGCAATATTTGAATATCTGATTTTCAATAAATGCTAAAACATCACAA 76
consensus_8433#2 ATTTTTGGGTTACAGCAATATTTGAATATCTGATTTTCAATGAATGCTAAAACATCACAA 120
***** ******************************** ******************
consensus_8433#0 GATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACA 177
consensus_8433#1 GATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGNGAGCACATAAAACA 136
consensus_8433#2 GATTAGTAGAGCACTGCATGACAAAAGTCTCGAGCAATGTTCTTGTGAGCACATAAAACA 180
********************************************* **************
consensus_8433#0 CAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTA 237
consensus_8433#1 CAACACCAAGGGCGATCGANACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTA 196
consensus_8433#2 CAACACCAAGGGCGATCGAGACCGGGAGGGCCGGCAATGCCTTACGGTAGAATGCTAGTA 240
******************* ****************************************
consensus_8433#0 GCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCATGT 297
consensus_8433#1 GCAGCAGGGTGATACCGAGCCCAGCAATTATGGCAAGATAACATGCATACACTGTCATGT 256
consensus_8433#2 GCAGCAGAGTGATACCGAGCCCAGCAATGATGGCAAGATAACATGCATACACTGTCATGT 300
******* ******************** *******************************
consensus_8433#0 AGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTAGAATATGAAGTCCCCCAATCCAA 357
consensus_8433#1 AGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTANAATATGAAGTCCCCCAATCCAA 316
consensus_8433#2 AGTCATACATTGCTGCCCTCCCGACGAGAACGCTGTAGAATATGAAGTCCCCCAATCCAA 360
************************************* **********************
consensus_8433#0 GCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGG 417
consensus_8433#1 GCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGG 376
consensus_8433#2 GCTTGATAGCCCCAGATGAACTCAACCCTATGCCATCTTCGTCATCCTCCTCATCCCTGG 420
************************************************************
consensus_8433#0 TTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCT 477
consensus_8433#1 TTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCT 436
consensus_8433#2 TTCTCTCTGGTCGCGGCTGGATCAATGGTACTCTCATTTCAGGAACAGACACACTAATCT 480
************************************************************
consensus_8433#0 CCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCA 537
consensus_8433#1 CCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCA 496
consensus_8433#2 CCGGCGATGCTGGCAACACCTCAACTTGTGCACTAGCAGAATCAGAGCTCAAATTCGGCA 540
************************************************************
consensus_8433#0 TCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATC 597
consensus_8433#1 TCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATC 556
consensus_8433#2 TCGATGTTCCAAGCCTCAAGTTTCTTGCATCACCAGCCAAGCCAACCCGTTCATCGGATC 600
************************************************************
consensus_8433#0 GGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCT 657
consensus_8433#1 GGATTGCGGAAACCCCCAAATTGCCAGCTGAACTGGCACCAAGATTTGTCCCCAACACCT 616
consensus_8433#2 CCCCTTG----------------------------------------------------- 607
*
consensus_8433#0 CACCAAGCACCTCAACTGTGGAATTGGCATCCAACTCTGCACCAGATTGCGTCCTCTCCC 717
consensus_8433#1 ------------------------------------------------------------
consensus_8433#2 ------------------------------------------------------------
consensus_8433#0 TCCACAGCCGCCAATTGTGGCCATGGCGGGGATCCACCGGCCTTGCCTCGTAGACCAACG 777
consensus_8433#1 ------------------------------------------------------------
consensus_8433#2 ------------------------------------------------------------
consensus_8433#0 CCGGGATCTCCTCGTTCCTCTCTATGGCCAACTCAAGGAGCAGTCTGAGAGGGCCACCGG 837
consensus_8433#1 ------------------------------------------------------------
consensus_8433#2 ------------------------------------------------------------
consensus_8433#0 GCAGCAGCACGGCGGCGAGGTCGTAGACCGCCATGGCGACGAGCAGCGCCCAGGTGGTCC 897
consensus_8433#1 ------------------------------------------------------------
consensus_8433#2 ------------------------------------------------------------
consensus_8433#0 ACTCCGGGAGCAGCGTGAACCAGAAGGCGGTGAGGACGGCGATGGCGACGAGCGCGGCCT 957
consensus_8433#1 ------------------------------------------------------------
consensus_8433#2 ------------------------------------------------------------
consensus_8433#0 GGTGGAGCGCGATGGGGACGGAGGCCGGGGA 988
consensus_8433#1 -------------------------------
consensus_8433#2 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||