cluster # 8448

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Oryza sativa
cluster # 8448 cluster # 8448 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8448#0 length = 709 sequences # 4

consensus_8448#1 length = 171 sequences # 1

consensusID : consensus_8448#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 709
fasta sequence

                              [AAAGGCGGAGCTGGACAATCAG-ATTGCT-GCCCTGG-AAGCCGAG-GCACGCATACTGGATCAGGAAGAAAACGAGTTCTGGAAG-AGCAGAAAC-GCCTTCAACACGACCTTGA-CTGAATTTCA-AAACGAGCGCGATGCCCTG-GCCACTC-GGTACGCCCACGATGCACAGGTGCTCAATCAACTACAGAGAAGAAGCGTCTACAACGACACCTTCAACATCACGCACGACAACCACTTTGCCACCATCAACGGCCTTCGCCTCGGCCGCCTACCAAATCCCTACGTCGACTGGCCCGAAATCAACGCGGCATGGGGCCAAACCTGTCTCCTACTCGCTACGCTCGCAGAACGCCTAGGCTACAAATTCGACGGCTACGAACTCTGTCCCATGGGCTCCACATCCACCATCACGCGCATAGAATCTAAAGGCGGAGGTGCTTCCGTCGTCGCTGAACCAACTACCACTAGACCGCAACAAGCATCCTCCACCGCCACGACTGCATCTTCACCACAGATATCGAAACAGCGCCTAGAGTTGTATTCCTCGGGCGACTTCCCCATC-AACTTCGGCTTCCTACACCGCAAATTCGACGCTGC-GATGGTGGCG-T-TCTCGAGTGTCTAAGACAACTCGGCG-AC-TTGTCGAGCATCACCATCA-GG-CCCTTCGAAGCGCTGCTAGC-GGCAGTGGAGGGGTCAGAATGCGTATGAATCCGTA]

[+] EMBL BU673299             [AAAGGCGGAGCTGGACAATCAG ATTGCT GCCCTGG AAGCCGAG GCACGCATACTGGATCAGGAAGAAAACGAGTTCTGGAAG AGCAGAAAC GCCTTCAACACGACCTTGA CTGAATTTCA AAACGAGCGCGATGCCCTG GCCACTC GGTACGCCCACGATGCACAGGTGCTCAATCAACTACAGAGAAGAAGCGTCTACAACGACACCTTCAACATCACGCACGACAACCACTTTGCCACCATCAACGGCCTTCGCCTCGGCCGCCTACCAAATCCCTACGTCGACTGGCCCGAAATCAACGCGGCATGGGGCCAAACCTGTCTCCTACTCGCTACGCTCGCAGAACGCCTAGGCTACAAATTCGACGGCTACGAACTCTGTCCCATGGGCTCCACATCCACCATCACGCGCATAGAATCTAAAGGCGGAGGTGCTTCCGTCGTCGCTGAACCAACTACCACTAGACCGCAACAAGCATCCTCCACCGCCACGACTGCATCTTCACCACAGATATCGAAACAGCGCCTAGAGTTGTATTCCTCGGGCGACTTCCCCATC AACTTCGGCTTCCTACACCGGAAATTCGACGCTGCGGATGGTGGCG T TCTCGAGTGTCTAAGANCACTCGGCG AC TTGTCGAGCATCACCATCA GG CCCTTCGAAGCGCCGCTAGCGGGCAGTGGAGGGGTCAGAATGCGTATGAATCCGTA]
[+] EMBL BU673294             [AAAGGGGGAGCTGGACAATCAGAATGGGTGGCCCTGGAAAGCCGAGTGCACGCATACGGGATCAGGAAGAAACCGAGTTCTGGAAGCAGCAGAAACGGCCTTCAACACGACCTTGACCTGAATTTCACAAACGAGCGCGATGCCCTGTGCCACTCGGGTACGCCCACGATGCACAGGTGCTCAATCAACTACAGAGAAGAAGCGTCTACAACGACACCTTCAACATCACGCACGACAACCACTTTGCCACCATCAACGGCCTTCGCCTCGGCCGTCTACCAAATCCCTACGTCGACTGGCCCGAAATCAACGCGGCATGGGGCCAAACCTGTCTCCTACTCGCTACGCTCGCAGAACGCCTAGGCTACAAATTCGACGGCTACGAACTCTGTCCCATGGGCTCCACATCCACCATCACGCGCATAGAATCTAAAGGCGGAGGTGCTTCCGTCGTCGCTGAACCAACTACCACTAGACCGGAACAAGCATCCTCCACCGGCACGACTGGATCTTCACCACAGATATCGAAACAGCGCCTAGAGTTGTATTCCTCGGGCGACTTCCCCATCAAACTTCGGCTTCCTACAACGCAAATTCGACGCTGC GATGGTGGCG TATCTCGAGTGTCTAAGACAACTCGGGGAAT TTGTCGAGCATCACCATCAGGG CCCTTCG AGCGCTGCTAGC GGCAGTGGAGGCGTCAaga                ]
[+] EMBL BI305409             [AAAGGCGGAGCTGGACAATCAG ATTGCT GCCCTGG AAGCCGAG GCACGCATACTGGATCAGGAAGAAAACGAGTTCTGGAAG AGCAGAAAC GCCTTCAACACGACCTTGA CTGAATTTCA AAACGAGCGCGATGCCCTG GCCACTC GGTACGCCCACGATGCACAGGTGCTCAATCAACTACAGAGAAGAAGCGTCTACAACGACACCTTCAACATCACGCACGACAACCACTTTGCCACCATCAACGGCCTTCGCCTCGGCCGCCTACCAAATCCCTACGTCGACTGGCCCGAAATCAACGCGGCATGGGGCCAAACCTGTCTCCTACTCGCTACGCTCGCAGAACGCCTAGGCTACAAATTCGACGGCTACGAACTCTGTCCCATGGGCTCCACATCCACCATCACGCGCATAGAATCTAAAGGCGGAGGTGCTTCCGTCGTCGCTGAACCAACTACCACTAGACCGCAACAAGCATCCTCCACCGCCACGACTGCATCTTCACCACAGATATCGAAACAGCGCCTAGAGTTGTATTCCTCGGGCGACTTCCCCATC AACTTCGGCTTCCTACACCGCAAATTCGACGCTGC GATGGTGGCGTT TCTCGAGTGTCTAAGACAACTCGGCG ACTTTGTCGAGCATCACCATCA GGCCCCTTCG AGCGCTGCTAGC GGCAGT                             ]
[+] EMBL BI305392             [AAAGGCGGAGCTGGACAATCAG ATTGCT GCCCTGG AAGCCGAG GCACGCATACTGGATCAGGAAGAAAACGAGTTCTGGAAG AGCAGAAAC GCCTTCAACACGACCTTGA CTGAATTTCA AAACGAGCGCGATGCCCTG GCCACTC GGTACGCCCACGATGCACAGGTGCTCAATCAACTACAGAGAAGAAGCGTCTACAACGACACCTTCAACATCACGCACGACAACCACTTTGCCACCATCAACGGCCTTCGCCTCGGCCGCCTACCAAATCCCTACGTCGACTGGCCCGAAATCAACGCGGCATGGGGCCAAACCTGTCTCCTACTCGCTACGCTCGCAGAACGCCTAGGCTACAAATTCGACGGCTACGAACTCTGTCCCATGGGCTCCACATCCACCATCACGCGCATAGAATCTAAAGGCGGAGGTGCTTCCGTCGTCGCTGAACCAACTACCACTAGACCGCAACAAGCATCCTCCACCGCCACGACTGCATCTTCACCACAGATATCGAAACAGCGCCTAGAGTTGTATTCCTCGGGCGACTTCCCCATC AACTTCGGCTTCCTACACCGCAAATTCGACGCTGC GATGGTGGCGTT TCTCGAGTGTCTAAGACAACTCGGCG ACTTTGTCGAGCATCACCATCA GGCCCCTTCGA                                                ]




>consensus_8448#0
AAAGGCGGAGCTGGACAATCAGATTGCTGCCCTGGAAGCCGAGGCACGCATACTGGATCA
GGAAGAAAACGAGTTCTGGAAGAGCAGAAACGCCTTCAACACGACCTTGACTGAATTTCA
AAACGAGCGCGATGCCCTGGCCACTCGGTACGCCCACGATGCACAGGTGCTCAATCAACT
ACAGAGAAGAAGCGTCTACAACGACACCTTCAACATCACGCACGACAACCACTTTGCCAC
CATCAACGGCCTTCGCCTCGGCCGCCTACCAAATCCCTACGTCGACTGGCCCGAAATCAA
CGCGGCATGGGGCCAAACCTGTCTCCTACTCGCTACGCTCGCAGAACGCCTAGGCTACAA
ATTCGACGGCTACGAACTCTGTCCCATGGGCTCCACATCCACCATCACGCGCATAGAATC
TAAAGGCGGAGGTGCTTCCGTCGTCGCTGAACCAACTACCACTAGACCGCAACAAGCATC
CTCCACCGCCACGACTGCATCTTCACCACAGATATCGAAACAGCGCCTAGAGTTGTATTC
CTCGGGCGACTTCCCCATCAACTTCGGCTTCCTACACCGCAAATTCGACGCTGCGATGGT
GGCGTTCTCGAGTGTCTAAGACAACTCGGCGACTTGTCGAGCATCACCATCAGGCCCTTC
GAAGCGCTGCTAGCGGCAGTGGAGGGGTCAGAATGCGTATGAATCCGTA

consensusID : consensus_8448#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 171
fasta sequence

                              [AAAGGCGGAGCTGGACAATCAGATTGCTGCCCTGGAAGCCGAGGCCACTGCCATACTGGGATCCAGGAAGAACACACGCAGTTCTTGGAAGAGCAGCAAACGCCTTCCACCACGACCTTGCACTGCAATTTCCAAAACGCAGCGCGATGCCCTTGGCCCACTCGGTACTGC]

[+] EMBL CB965972             [AAAGGCGGAGCTGGACAATCAGATTGCTGCCCTGGAAGCCGAGGCCACTGCCATACTGGGATCCAGGAAGAACACACGCAGTTCTTGGAAGAGCAGCAAACGCCTTCCACCACGACCTTGCACTGCAATTTCCAAAACGCAGCGCGATGCCCTTGGCCCACTCGGTACTGC]




>consensus_8448#1
AAAGGCGGAGCTGGACAATCAGATTGCTGCCCTGGAAGCCGAGGCCACTGCCATACTGGG
ATCCAGGAAGAACACACGCAGTTCTTGGAAGAGCAGCAAACGCCTTCCACCACGACCTTG
CACTGCAATTTCCAAAACGCAGCGCGATGCCCTTGGCCCACTCGGTACTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8448#0      AAAGGCGGAGCTGGACAATCAGATTGCTGCCCTGGAAGCCGAGGC-ACG--CATACTGGA 57
consensus_8448#1      AAAGGCGGAGCTGGACAATCAGATTGCTGCCCTGGAAGCCGAGGCCACTGCCATACTGGG 60
                      ********************************************* **   ******** 

consensus_8448#0      --TCAGGAAGAAAACG---AGTTCT-GGAAGAGCAG-AAACGCCTTCAAC-ACGACCTTG 109
consensus_8448#1      ATCCAGGAAGAACACACGCAGTTCTTGGAAGAGCAGCAAACGCCTTCCACCACGACCTTG 120
                         ********* **    ****** ********** ********** ** *********

consensus_8448#0      -ACTGAA--TTTCAAAACG-AGCGCGATGCCCTGG--CCACTCGGTACGCCCACGATGCA 163
consensus_8448#1      CACTGCAATTTCCAAAACGCAGCGCGATGCCCTTGGCCCACTCGGTACTGC--------- 171
                       **** *  ** ******* ************* *  ***********  *         

consensus_8448#0      CAGGTGCTCAATCAACTACAGAGAAGAAGCGTCTACAACGACACCTTCAACATCACGCAC 223
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      GACAACCACTTTGCCACCATCAACGGCCTTCGCCTCGGCCGCCTACCAAATCCCTACGTC 283
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      GACTGGCCCGAAATCAACGCGGCATGGGGCCAAACCTGTCTCCTACTCGCTACGCTCGCA 343
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      GAACGCCTAGGCTACAAATTCGACGGCTACGAACTCTGTCCCATGGGCTCCACATCCACC 403
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      ATCACGCGCATAGAATCTAAAGGCGGAGGTGCTTCCGTCGTCGCTGAACCAACTACCACT 463
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      AGACCGCAACAAGCATCCTCCACCGCCACGACTGCATCTTCACCACAGATATCGAAACAG 523
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      CGCCTAGAGTTGTATTCCTCGGGCGACTTCCCCATCAACTTCGGCTTCCTACACCGCAAA 583
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      TTCGACGCTGCGATGGTGGCGTTCTCGAGTGTCTAAGACAACTCGGCGACTTGTCGAGCA 643
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      TCACCATCAGGCCCTTCGAAGCGCTGCTAGCGGCAGTGGAGGGGTCAGAATGCGTATGAA 703
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      TCCGTA 709
consensus_8448#1      ------