These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 857 fasta sequence [GCGACTGCGAGGCGAACTCGTCACCACACACTCCTCCTCCCTCATCGCCGCCGTCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTCTCCCCCGTACTCCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCCTCCTCGCCGTGACGACCGCACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTCCACCCCCTCCAAGAACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGCGGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCGGCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTCTGGGACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCACCGGGTTCGCGTACACGCTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCCGTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCCGACTTCATCTACACCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCACGTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGCTTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAACGAAATTGGAGGATTTAATCCGAAAAAAAAAAAATAAAAAGA] [+] EMBL AK065746 [GCGACTGCGAGGCGAACTCGTCACCACACACTCCTCCTCCCTCATCGCCGCCGTCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTCTCCCCCGTACTCCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCCTCCTCGCCGTGACGACCGCACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTCCACCCCCTCCAAGAACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGCGGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCGGCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTCTGGGACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCACCGGGTTCGCGTACACGCTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCCGTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCCGACTTCATCTACACCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCACGTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGCTTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAACGAAATTGGAGGATTTAATCCGA ] [+] EMBL CB683241 [ CATCGCCGCCGTCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTCTCCCCCGTACTCCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCCTCCTCGCCGTGACGACCGCACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTCCACCCCCTCCAAGAACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGCGGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCGGCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTCTGGGACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCACCGGGTTCGCGTACACGCTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCCGTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCCGACTTCATCTACACCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCACGTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGCTTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAACGA ] [-] EMBL CB683648 [ AACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGCGGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCGGCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTTTGGGACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCCCCGGGTTCGCGTACACGCTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCCGTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCCGACTTCATTTACCCCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCACGTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGCTTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAGGGAAATTGGGGGATTTAAAAAAAAAAAAAAAAAATAAAAAGA] consensusID : consensus_8456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [CCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTANAGNCCGTACNGCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCTCCTNGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGNTCTNCACCNNCTNCAAGAACCAGCGGAGGGAGAAGTNAGCGGCGGTGGCGGGGAAGACAGGACGTGCGGGNTCNGACGTGGGNGCTGATCGGGGCATNGNGGCGGC] [+] EMBL OSC04621 [CCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTCGCCTANAGNCCGTACNGCACCACCACCCCCGCCACCTCCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCTCCTNGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGNTCTNCACCNNCTNCAAGAACCAGCGGAGGGAGAAGTNAGCGGCGGTGGCGGGGAAGACAGGACGTGCGGGNTCNGACGTGGGNGCTGATCGGGGCATNGNGGCGGC] consensusID : consensus_8456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [TCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTNGCCTNNANCCCGTACTCCACCACCACCCCCGNCACCTNCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTNCCTTCCCCTCAGCGAACGAACCAGCANNGTCTTCTTGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTTCANCTTGTTGCAAGAACCAGNGGAGGGAGAAGTCAGCGGN] [+] EMBL OS0791A [TCCTCACCTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCCACCTACCTNGCCTNNANCCCGTACTCCACCACCACCCCCGNCACCTNCGCCTCCATGGCCGCACCACCGTCTTCCAAGCTCGCCTNCCTTCCCCTCAGCGAACGAACCAGCANNGTCTTCTTGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTTCANCTTGTTGCAAGAACCAGNGGAGGGAGAAGTCAGCGGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8456#0 GCGACTGCGAGGCGAACTCGTCACCACACACTCCTCCTCCCTCATCGCCGCCGTCCTCAC 60 consensus_8456#1 ------------------------------------------------------CCTCAC 6 consensus_8456#2 -----------------------------------------------------TCCTCAC 7 ****** consensus_8456#0 CTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCC 120 consensus_8456#1 CTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCC 66 consensus_8456#2 CTCACCGCCGGCCAAGCCAGCCGCGGCGGCGCAAGATGAACCACCACCTCTCGCTCCTCC 67 ************************************************************ consensus_8456#0 ACCTACCTCGCCTCTCCCCCGTACTCCACCACCACCCCCGCCACCTCCGCCTCCATGGCC 180 consensus_8456#1 ACCTACCTCGCCTANAGNCCGTACNGCACCACCACCCCCGCCACCTCCGCCTCCATGGCC 126 consensus_8456#2 ACCTACCTNGCCTNNANCCCGTACTCCACCACCACCCCCGNCACCTNCGCCTCCATGGCC 127 ******** **** ****** ************** ***** ************* consensus_8456#0 GCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGCCTCC 240 consensus_8456#1 GCACCACCGTCTTCCAAGCTCGCCTCCCTTCCCCTCAGCGAACGAACCAGCACCGC-TCC 185 consensus_8456#2 GCACCACCGTCTTCCAAGCTCGCCTNCCTTCCCCTCAGCGAACGAACCAGCANNGTCTTC 187 ************************* ************************** * * * consensus_8456#0 TCGCCGTGACGACCGCACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTCCACC 300 consensus_8456#1 TNGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGNTC-TNCACC 244 consensus_8456#2 TTGCCGTGACGACCGNACCACCGGAGCCCGAGAAGACGGAGGAGCAGCAGCTCCTTCANC 247 * ************* ********************************** ** * ** * consensus_8456#0 CC-CTCCAAGAACCAGCGGAGGGAGAAGTCAGCGGCGGTGGCGGGGCAGACAGGACGTGC 359 consensus_8456#1 NN-CTNCAAGAACCAGCGGAGGGAGAAGTNAGCGGCGGTGGCGGGGAAGACAGGACGTGC 303 consensus_8456#2 TTGTTGCAAGAACCAGNGGAGGGAGAAGTCAGCGGN------------------------ 283 * ********** ************ ***** consensus_8456#0 GGGCTCCCGACGTGGGCGCTGATCGGGGCCATCGCGGCGGCGGTGGCGCTGTCGTCGGCG 419 consensus_8456#1 GGGNTCN-GACGTGGGNGCTGATCGGGGC-ATNGNGGCGGC------------------- 342 consensus_8456#2 ------------------------------------------------------------ consensus_8456#0 GCGGCGGCCGGGCCGGCGGCGGCGCTGGGGCCGGAGGGCCCGCTGGTGGAGGAGTTCTGG 479 consensus_8456#1 ------------------------------------------------------------ consensus_8456#2 ------------------------------------------------------------ consensus_8456#0 GACAACATGCGGCGGTACGCGCTGTACGTGGTGACGGTGAGCACCGGGTTCGCGTACACG 539 consensus_8456#1 ------------------------------------------------------------ consensus_8456#2 ------------------------------------------------------------ consensus_8456#0 CTGGCGCAGCCCATCGTGGAGCTGCTCAAGAACCCCGTCACGGCGCTGCTCATCGTCGCC 599 consensus_8456#1 ------------------------------------------------------------ consensus_8456#2 ------------------------------------------------------------ consensus_8456#0 GTCCTCGCCGGCGGCGGGTTCCTCGTCTCCCAGGTGCTCAACGCCATGGTCGGGAACTCC 659 consensus_8456#1 ------------------------------------------------------------ consensus_8456#2 ------------------------------------------------------------ consensus_8456#0 GACTTCATCTACACCTACGACCAGTAGTAGAACAACAGCAACATCCCAATCCTTTTTCAC 719 consensus_8456#1 ------------------------------------------------------------ consensus_8456#2 ------------------------------------------------------------ consensus_8456#0 GTGTAATATGCTTTTCAGTTTCAGCTAGAACAGGTGATGATGATGTGATCAAGTTTTTGC 779 consensus_8456#1 ------------------------------------------------------------ consensus_8456#2 ------------------------------------------------------------ consensus_8456#0 TTGGCAAATGTAGCCGTGTTTGGTGTAAATTTCGAACGAAATTGGAGGATTTAATCCGAA 839 consensus_8456#1 ------------------------------------------------------------ consensus_8456#2 ------------------------------------------------------------ consensus_8456#0 AAAAAAAAAATAAAAAGA 857 consensus_8456#1 ------------------ consensus_8456#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||