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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1061 fasta sequence
[AAAATAAAATCTTCCTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAGAAAGCATACGAAAAAAAGCAAAAGCGGCAACAGCAAATACGATCAGGAACACCAATTAAACCCAGCGTAAAGAAAGACAAACCGGAAAGTTCAAAAAAACCAAGCTCATATAATAGTTCAGATTCAAAGGCAAAAAAAAGAGTCGATTACAGCGATGACGATGACGATTTCATTGTAAAACTGAAGAGATCCAGGGGATGATAGTATTCAGATACCAGCATATTCCTATAGCACCAAGGCTAATAAACAGGTGCTGCTCTGAGGTTTCCATGGCAATGGTAACAACCAAATGGGTTCATGATGATTCTGGTGGAACAACATTTCTGTTTATTGTCAATATTGGAGTAGAAAGAAAAATGGAGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTGTGTCTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAGGTTTCCCTTTGCTTTGCTGGTGTCGTTGTATTTTGCGATTTGTACCTGCACGGTACCGTACCTTACCTTTGGTAGATAAGATTTGGTTTGTTGCATTGCTGTTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK107887 [AAAATAAAATCTTCCTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAG ]
[+] EMBL AK108209 [ ATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAGAAAGCATACGAAAAAAAGCAAAAGCGGCAACAGCAAATACGATCAGGAACACCAATTAAACCCAGCGTAAAGAAAGACAAACCGGAAAGTTCAAAAAAACCAAGCTCATATAATAGTTCAGATTCAAAGGCAAAAAAAAGAGTCGATTACAGCGATGACGATGACGATTTCATTGTAAAACTGAAGAGATCCAGGGGATGATAGTATTCAGATACCAGCATATTCCTATAGCACCAAGGCTAATAAACAGGTGCTGCTCTGAGGTTTCCATGGCAATGGTAACAACCAAATGGGTTCATGATGATTCTGGTGGAACAACATTTCTGTTTATTGTCAATATTGGAGTAGAAAGAAAAATGGAGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTGTGTCTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAG ]
[-] EMBL CA761233 [ agagGACGAGA CAAGGGGATGATAGTTTTCAGATACCAGCATATTCCTATAGCACCAAGGCTAATAAACAGGTGCTGCTTTGAGGTTTCCATGGCAATGGTAACAACCAAATGGGTTCATGATGATTTTGGTGGAACAACATTTCTGTTTATTGTCAATATTGGAGTAGAAAGAAAAATGGAGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTGTGTTTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAGGTTTCCCTTTGCTTTGCTGGTGTCGTTGTATTTTGCGATTTGTACCTGCACGGTACCGTACCTTACCTTTGGTAGATAAGATTTGGTTTGTTGCATTGCTGTTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA765245 [ TTTAGATACCAGCATATTCCTATAGCACCAAGGCTAATAAACAGGTGCTGCTCTGAGGTTTCCATGGCAATGGTAACAACCAAATGGGTTCATGATGATTCTGGTGGAACGACATTTCTGTTTATTGTCAATATTGGAGTAGAAAGAAAAATGGAGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTGTGTCTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAGGT ]
consensusID : consensus_8457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 924 fasta sequence
[CTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTACGCACAAATTTTTACACCTTTTAGCGTAATATATAAATTTTCTTCTATCTCAACTGTTAGAAATACTCCTACCCCTATATGGAATATATATACAGTAGTAGTACATACTAGTGACATTCAGGTGTCTGTCTAACTAGTGGAGTACTAGCTATCTAGTAGGATTCTGACAGTAAATTCTTCTAAGAATACTTGTAGCTTCAACGCATGAAGCTTACTGCTATCAACTGACTAATATCGCCTACTCAAAGCAGACACTAGTACTAAATTTGGTTGCCTCATGTTAGCACAAGTTCACACATCATTCTAATGAAGGGCATGAAACCATTCATATAAATAAGTTCTCTCACTTACCAATGATAAATCCTAGGTTTGTCTTACAAACTGCAGTGATCAATTATATTACCCTAGTACCTCATCCACGAAAATGTACAACAGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAGAAAGCATACG]
[+] EMBL AK062521 [CTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTACGCACAAATTTTTACACCTTTTAGCGTAATATATAAATTTTCTTCTATCTCAACTGTTAGAAATACTCCTACCCCTATATGGAATATATATACAGTAGTAGTACATACTAGTGACATTCAGGTGTCTGTCTAACTAGTGGAGTACTAGCTATCTAGTAGGATTCTGACAGTAAATTCTTCTAAGAATACTTGTAGCTTCAACGCATGAAGCTTACTGCTATCAACTGACTAATATCGCCTACTCAAAGCAGACACTAGTACTAAATTTGGTTGCCTCATGTTAGCACAAGTTCACACATCATTCTAATGAAGGGCATGAAACCATTCATATAAATAAGTTCTCTCACTTACCAATGATAAATCCTAGGTTTGTCTTACAAACTGCAGTGATCAATTATATTACCCTAGTACCTCATCCACGAAAATGTACAACAGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAGAAAGCATACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8457#0 AAAATAAAATCTTCCTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTC 60
consensus_8457#1 --------------CTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTC 46
**********************************************
consensus_8457#0 GCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTG 120
consensus_8457#1 GCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTG 106
************************************************************
consensus_8457#0 GCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGA 180
consensus_8457#1 GCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGA 166
************************************************************
consensus_8457#0 GCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGG 240
consensus_8457#1 GCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGG 226
************************************************************
consensus_8457#0 AATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGC 300
consensus_8457#1 AATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGC 286
************************************************************
consensus_8457#0 CTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAA 360
consensus_8457#1 CTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAA 346
************************************************************
consensus_8457#0 ATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCA 420
consensus_8457#1 ATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCA 406
************************************************************
consensus_8457#0 GATACCCTCCAGTGAGATGGCTGAATTCTGGTTGATGGAACACGGGTTGTTATCTCCCGA 480
consensus_8457#1 GATACCCTCCAGTGAGATGGCTGAATTCTGGT-----ACGCACAAATTTTTACACCTTTT 461
******************************** *** ** *** *
consensus_8457#0 AAGAGCAAAGAAAGCATACGAAAAAAAGCAAAAGCGGCAACAGCAAATACGATCAGGAAC 540
consensus_8457#1 A------------GCGTAATATATAAATTTTCTTCTATCTCA------ACTGTTAGAAAT 503
* ** ** * * *** * ** ** * ** **
consensus_8457#0 ACCAATTAAACCCAGCGTAAAGAAAGACAAACCGGAA-AGTTCAAAAAAACCAAGCTCAT 599
consensus_8457#1 ACTCCT--ACCCCTATATGGA-ATATATATACAGTAGTAGTACATACTAGTGACATTCAG 560
** * * *** * * * * * * ** * * *** ** * * * ***
consensus_8457#0 ATAATAGTTCAGATTCAAAGGCAAAAAAAAGAGTCGATTACAGCGATGACGATGACGATT 659
consensus_8457#1 GTGTCTGTCTAACT---AGTGGAGTACTAGCTATCTAGTAGGATTCTGACAGTAA--ATT 615
* ** * * * * * * * ** * ** **** * * ***
consensus_8457#0 TCATTGTAAAACTGAAGAGATCCAGGGGATGATAGTATTCAGATACCAGCATATTCCTAT 719
consensus_8457#1 CTTCTAAGAATACTTGTAGCTTCAACGCATGA-AGCTTACTGCTATCAACTGACTAATAT 674
* ** ** * ** * **** ** * * * ** ** * * * ***
consensus_8457#0 AGCACCAAGGCTAATAAACAGGTGCTGCTCTGAGGTTTCCATGGCA-ATGGTAACAACCA 778
consensus_8457#1 CGCCT----ACTCA-AAGCAGACACTAGTACTAAATTTGGTTGCCTCATGTTAGCA--CA 727
** ** * ** *** ** * * *** ** * *** ** ** **
consensus_8457#0 AATGGGTTCATGATGATTCTGGTGGA----ACAACATTTCTGTTTATTGTCAATATTGGA 834
consensus_8457#1 AGTTCACACATCATTCTAATGAAGGGCATGAAACCATTCATATAAATAAGTTCTCTCACT 787
* * *** ** * ** ** * * **** * * ** * *
consensus_8457#0 GTAGAAAGAAAAATGG-AGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTG 893
consensus_8457#1 TACCAATGATAAATCCTAGGTTTGTCTTACAAACTGCAGTGATCAATTATATTACCCTAG 847
** ** **** ** * * * * * * ** * * * * *
consensus_8457#0 TGTCTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAGGTTTCCCTTTGCTTT 953
consensus_8457#1 TACCTCATCCACGAAAATGTACAACA---GGTTGATGGAACACGGGTTGTTATCTCC--C 902
* ** ** * * * * ** * * * * * * **** * * *
consensus_8457#0 GCTGGTGTCGTTGTATTTTGCGATTTGTACCTGCACGGTACCGTACCTTACCTTTGGTAG 1013
consensus_8457#1 GAAAGAGCAAAGAAAGCATACG-------------------------------------- 924
* * * * * **
consensus_8457#0 ATAAGATTTGGTTTGTTGCATTGCTGTTAAAAAAAAAAAAAAAAAAAA 1061
consensus_8457#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||