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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2202 fasta sequence
[GTCCACTCCAGTGATCCGCGCTCGCTTGGAAATCCGAGCCGCGGCCTCAGATCCAATTTTCCGAGTCAAAATTCTGGGAGGAATCCATCCAATCCGCGGAGGAAGCTTCCACCGCGCAGATCCCCAAACCCCGGCCCATCCCCGTCCTCCAATCCACATCGATCCCCTGCAGATTCGAGGCGGAAATGGGGGAGGGGATCAACGGCGACGCCGGCGACCTCGCGGCGGCGCCGTACGACCAGTGGCTCCCATTCAGCCCCGCCGGGGGATCCCCGCGCCCATCCGCGCGTTACAAGCATGCTGCGGAAGTGGTTCGTGAAAAACTCTATGTGGTTGGTGGGAGTCGTAATGGCCGCTATCTATCAGATATCCAGGTCTTTGATTTTAGGACACTCAAGTGGTCAGCATTAAGTGCTGCTAGAGATTCAAGTCAGTTGAATATCGAAAATAATACCACAGACCCTTCATTCCCTGCACTAGCAGGCCACAGTCTGGTCAACTGGAAAAAATATATTGTGGTTGTAGCTGGGAACACCAGAACATCAACATCAAACAAGGTTTCAGTTTGGCTTATTAATGTGGAAACAAATAGCTGGTCTTCTGTTGATACATATGGAAAAGTTCCAATATCTCGTGGTGGTCAATCTGTATCCCTGGTTGGTTCTCGACTGATAATGTTTGGTGGAGAGGATAACAAGAGGCGACTTCTGAACGACCTTCATATACTTGACCTGGAGACAATGATGTGGGAAGAAGTTAAAACAGGGAAAGGTGGTCCAGCTCCTAGGTATGATCATTCAGCTGCTGTTTATGCTGATCAGTATCTTTTGATCTTTGGCGGTTCCTCTCACTCTACATGCTAGTGATATCTACCTTCTTGACTTGCAAACTATGGAGTGGTCTCAACCTGACACTCAAGGCGCGCACATAAATCCTAGGAGTGGTCATGCTGGTACCATGATTGATGAAAATTGGTACATAGTTGGTGGCGGAGATAACGCAAGTGGTTCTACTGATACAATTATGATGAATGCTTCCAAGTTCGTTTGGTCTGTAGTCACCAGTGTGCCAGCCCGAGATCCGCTTGCTTGTGAGGGTCTCACTCTTTGCTCAACCACAGTTGATGGCGAAAAGTTTCTGGTTGCCTTTGGTGGTTACAATGGACAATACAATAATGAGATATTTGTTATGAAACTTAAGCCAAGGAATTTAGTGCAACCTCGTCTGCTCCAATCACCAGCTGCTGCCGCCGCAGCTGCTTCTGTGACAGCTGCCTATGCTGTAATAACTGATGAGAAAACCAGAGACATTGTTGCAACGGATGATTTAGATGTGAAGAGAGTTCAGCCTTCAGGTTCTTCCAAACAAATTACTACTGAACTTGATGCACTTAATGGAGAGAAAGGCAAGCTAGAGTCCAGACTGGCAGAAGTTCGTGATGAAAACTCAAAACTAAAGGATAGACTAGATATGGTAAAGTTATCGCATGGTGAATTGACAAAGGAGCTTAAATCAGTTCAACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTGGAGTCCCAAATTGCTGCTGCTCATAAAAGACTGGAATCTACTGATTCTTTGGAGAATGAACTAGAAGTGTTGCGGCAACAAATATCTCAGGTGGAGCAAACCATGACAACTGCTCAAAGACAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAATAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTACAGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCCAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAATTTGGTTCAGTTGTCACTATATGCATGTCTCAATTCTGTGTGAAAAAAAAAAAGA]
[+] EMBL AK068072 [GTCCACTCCAGTGATCCGCGCTCGCTTGGAAATCCGAGCCGCGGCCTCAGATCCAATTTTCCGAGTCAAAATTCTGGGAGGAATCCATCCAATCCGCGGAGGAAGCTTCCACCGCGCAGATCCCCAAACCCCGGCCCATCCCCGTCCTCCAATCCACATCGATCCCCTGCAGATTCGAGGCGGAAATGGGGGAGGGGATCAACGGCGACGCCGGCGACCTCGCGGCGGCGCCGTACGACCAGTGGCTCCCATTCAGCCCCGCCGGGGGATCCCCGCGCCCATCCGCGCGTTACAAGCATGCTGCGGAAGTGGTTCGTGAAAAACTCTATGTGGTTGGTGGGAGTCGTAATGGCCGCTATCTATCAGATATCCAGGTCTTTGATTTTAGGACACTCAAGTGGTCAGCATTAAGTGCTGCTAGAGATTCAAGTCAGTTGAATATCGAAAATAATACCACAGACCCTTCATTCCCTGCACTAGCAGGCCACAGTCTGGTCAACTGGAAAAAATATATTGTGGTTGTAGCTGGGAACACCAGAACATCAACATCAAACAAGGTTTCAGTTTGGCTTATTAATGTGGAAACAAATAGCTGGTCTTCTGTTGATACATATGGAAAAGTTCCAATATCTCGTGGTGGTCAATCTGTATCCCTGGTTGGTTCTCGACTGATAATGTTTGGTGGAGAGGATAACAAGAGGCGACTTCTGAACGACCTTCATATACTTGACCTGGAGACAATGATGTGGGAAGAAGTTAAAACAGGGAAAGGTGGTCCAGCTCCTAGGTATGATCATTCAGCTGCTGTTTATGCTGATCAGTATCTTTTGATCTTTGGCGGTTCCTCTCACTCTACATGCTAGTGATATCTACCTTCTTGACTTGCAAACTATGGAGTGGTCTCAACCTGACACTCAAGGCGCGCACATAAATCCTAGGAGTGGTCATGCTGGTACCATGATTGATGAAAATTGGTACATAGTTGGTGGCGGAGATAACGCAAGTGGTTCTACTGATACAATTATGATGAATGCTTCCAAGTTCGTTTGGTCTGTAGTCACCAGTGTGCCAGCCCGAGATCCGCTTGCTTGTGAGGGTCTCACTCTTTGCTCAACCACAGTTGATGGCGAAAAGTTTCTGGTTGCCTTTGGTGGTTACAATGGACAATACAATAATGAGATATTTGTTATGAAACTTAAGCCAAGGAATTTAGTGCAACCTCGTCTGCTCCAATCACCAGCTGCTGCCGCCGCAGCTGCTTCTGTGACAGCTGCCTATGCTGTAATAACTGATGAGAAAACCAGAGACATTGTTGCAACGGATGATTTAGATGTGAAGAGAGTTCAGCCTTCAGGTTCTTCCAAACAAATTACTACTGAACTTGATGCACTTAATGGAGAGAAAGGCAAGCTAGAGTCCAGACTGGCAGAAGTTCGTGATGAAAACTCAAAACTAAAGGATAGACTAGATATGGTAAAGTTATTGCATGGTGAATTGACAAAGGAGCTTAAATCAGTTCAACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTGGAGTCCCAAATTGCTGCTGCTCATAAAAGACTGGAATCTACTGATTCTTTGGAGAATGAACTAGAAGTGTTGCGGCAACAAATATCTCAGGTGGAGCAAACCATGACAACTGCTCAAAGACAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAATAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTACAGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCCAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAATTTGGTTC ]
[+] EMBL CB633569 [ AATTTTCCGAGTCAAAATTCTGGGAGGAATCCATCCAATCCGCGGAGGAAGCTTCCACCGCGCAGATCCCCAAACCCCGGCCCATCCCCGTCCTCCAATCCACATCGATCCCCTGCAGATTCGAGGCGGAAATGGGGGAGGGGATCAACGGCGACGCCGGCGACCTCGCGGCGGCGCCGTACGACCAGTGGCTCCCATTCAGCCCCGCCGGGGGATCCCCGCGCCCATCCGCGCGTTACAAGCATGCTGCGGAAGTGGTTCGTGAAAAACTCTATGTGGTTGGTGGGAGTCGTAATGGCCGCTATCTATCAGATATCCAGGTCTTTGATTTTAGGACACTCAAGTGGTCAGCATTAAGTGCTGCTAGAGATTCAAGTCAGTTGAATATCGAAAATAATACCACAGACCCTTCATTCCCTGCACTAGCAGGCCACAGTCTGGTCAACTGGAAAAATTATATTGTGGTTGTAGCTGGGAACACCAGAACATCAACATCAAACAAGGTTTCAGTTTGGCTTATTAATGTGGAAACAAATAGCTGGTCTTCTGTTGATACATATGGAAAAGTTCCAATATCTCGTGGTGGTCAATCTGTATCCCTGGTTGGTTCTCGACTGATAATGTTTGGTGGAGAGGATAACAAGAGGCGACTTCTGAACGACCTTCATATACTTGACCTGGAGACAATGATGTGGGAAGAAGTTAAAACAGGGAAAGGTGGTCCAGCTCCTAGGTATGATCATTCAGCTGCTGTTTATGCTGATCAGTATCTTTTGATCTTTGGCGGTTCCTCTCA ]
[-] EMBL CB638133 [ CACTTAATGGAGAGAAAGGCAAGTTAGAGTCCAGACTGGCAGAAGTTCGTGATGAAAACTCAACACTAAAGGATAGACTAGATATGGTAAAGTTATCGCATGGTGAATTGACAAAGGAGCTTAAATCAGTTCGACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTGGAGTCCCAAATTGCTGTTGTTCATAAAAGAGTGGAATCAATTGATTCTTTGGAGAATGAACTAGAAGTGTTGCGGCAACAAATATCTCAGGTGGAGCAAACCATGACAACTGCTCAAAGACAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAATAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTACAGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCCAAGACAGTCTTCTGAATCTTTTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATACACCGAATCATTTGTATCACATTCTAGAAATAATTAAATAGTTATTA ]
[-] EMBL CB633570 [ AAGGCAAGCTAGAGTCCAGACTGGCAGAAGTTCGTGATGAAAACTCAAAACTAAAGGATAGACTAGATATGGTAAAGTTATCGCATGGTGAATTGACAAAGGAGCTTAAATCAGTTCAACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTGGAGTCCCAAATTGCTGCTGCTCATAAAAGACTGGAATCTACTGATTCTTTGGAGAATGAACTAGAAGTGTTGCGGCAACAAATATCTCTGGTGGAGCAAACCATGACAACTGCTCAAAGACAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAATAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTACAGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCCAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAATTTGGTTCAGTTGTCACTATATGCATGTCTCAATTCTGTGTGAAAAAAAAAAAGA]
consensusID : consensus_8462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[CTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCTAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAAAAAAAAAAAAAAAA]
[-] EMBL CA761257 [CTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCTAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8462#0 GTCCACTCCAGTGATCCGCGCTCGCTTGGAAATCCGAGCCGCGGCCTCAGATCCAATTTT 60
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CCGAGTCAAAATTCTGGGAGGAATCCATCCAATCCGCGGAGGAAGCTTCCACCGCGCAGA 120
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 TCCCCAAACCCCGGCCCATCCCCGTCCTCCAATCCACATCGATCCCCTGCAGATTCGAGG 180
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CGGAAATGGGGGAGGGGATCAACGGCGACGCCGGCGACCTCGCGGCGGCGCCGTACGACC 240
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 AGTGGCTCCCATTCAGCCCCGCCGGGGGATCCCCGCGCCCATCCGCGCGTTACAAGCATG 300
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CTGCGGAAGTGGTTCGTGAAAAACTCTATGTGGTTGGTGGGAGTCGTAATGGCCGCTATC 360
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 TATCAGATATCCAGGTCTTTGATTTTAGGACACTCAAGTGGTCAGCATTAAGTGCTGCTA 420
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 GAGATTCAAGTCAGTTGAATATCGAAAATAATACCACAGACCCTTCATTCCCTGCACTAG 480
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CAGGCCACAGTCTGGTCAACTGGAAAAAATATATTGTGGTTGTAGCTGGGAACACCAGAA 540
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CATCAACATCAAACAAGGTTTCAGTTTGGCTTATTAATGTGGAAACAAATAGCTGGTCTT 600
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CTGTTGATACATATGGAAAAGTTCCAATATCTCGTGGTGGTCAATCTGTATCCCTGGTTG 660
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 GTTCTCGACTGATAATGTTTGGTGGAGAGGATAACAAGAGGCGACTTCTGAACGACCTTC 720
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 ATATACTTGACCTGGAGACAATGATGTGGGAAGAAGTTAAAACAGGGAAAGGTGGTCCAG 780
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CTCCTAGGTATGATCATTCAGCTGCTGTTTATGCTGATCAGTATCTTTTGATCTTTGGCG 840
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 GTTCCTCTCACTCTACATGCTAGTGATATCTACCTTCTTGACTTGCAAACTATGGAGTGG 900
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 TCTCAACCTGACACTCAAGGCGCGCACATAAATCCTAGGAGTGGTCATGCTGGTACCATG 960
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 ATTGATGAAAATTGGTACATAGTTGGTGGCGGAGATAACGCAAGTGGTTCTACTGATACA 1020
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 ATTATGATGAATGCTTCCAAGTTCGTTTGGTCTGTAGTCACCAGTGTGCCAGCCCGAGAT 1080
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CCGCTTGCTTGTGAGGGTCTCACTCTTTGCTCAACCACAGTTGATGGCGAAAAGTTTCTG 1140
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 GTTGCCTTTGGTGGTTACAATGGACAATACAATAATGAGATATTTGTTATGAAACTTAAG 1200
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CCAAGGAATTTAGTGCAACCTCGTCTGCTCCAATCACCAGCTGCTGCCGCCGCAGCTGCT 1260
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 TCTGTGACAGCTGCCTATGCTGTAATAACTGATGAGAAAACCAGAGACATTGTTGCAACG 1320
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 GATGATTTAGATGTGAAGAGAGTTCAGCCTTCAGGTTCTTCCAAACAAATTACTACTGAA 1380
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CTTGATGCACTTAATGGAGAGAAAGGCAAGCTAGAGTCCAGACTGGCAGAAGTTCGTGAT 1440
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 GAAAACTCAAAACTAAAGGATAGACTAGATATGGTAAAGTTATCGCATGGTGAATTGACA 1500
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 AAGGAGCTTAAATCAGTTCAACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTG 1560
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 GAGTCCCAAATTGCTGCTGCTCATAAAAGACTGGAATCTACTGATTCTTTGGAGAATGAA 1620
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CTAGAAGTGTTGCGGCAACAAATATCTCAGGTGGAGCAAACCATGACAACTGCTCAAAGA 1680
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 CAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAA 1740
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 TAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTAC 1800
consensus_8462#1 ------------------------------------------------------------
consensus_8462#0 AGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATA 1860
consensus_8462#1 ---------------------------CTCAAGATCTTGTTCGCGGTTGATTTTGAGATA 33
*********************************
consensus_8462#0 ATATCTCCCAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCC 1920
consensus_8462#1 ATATCTCCTAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCC 93
******** ***************************************************
consensus_8462#0 ATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATT 1980
consensus_8462#1 ATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATT 153
************************************************************
consensus_8462#0 TGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTT 2040
consensus_8462#1 TGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTT 213
************************************************************
consensus_8462#0 TTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATA 2100
consensus_8462#1 TTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATA 273
************************************************************
consensus_8462#0 CATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAATTTGGTTCAGTTG 2160
consensus_8462#1 CATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAAAAAAAAAAAAAAA 333
*********************************************** *
consensus_8462#0 TCACTATATGCATGTCTCAATTCTGTGTGAAAAAAAAAAAGA 2202
consensus_8462#1 A----------------------------------------- 334
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||