These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1540 fasta sequence [CTCAACCAAACTTGAAAGAAATAGCAGAAGCAGAGATGCAGCAATTGTTGACACTGGTTCGGCACACGGCTGATCTGTACCATGAGTTGCATGCATTAGATAGATTTGAGCAAGATTATCGCCGTAAATTGGAGGAAGAGAAAAAATCAGTTGCTTTTGAAAGAGGGGACACTGTTCAGATTATAAGGCAAGAATTGAAGAGCCAAAGGAGGCATGTGAAAAGCTTGAAGAAAAAGTCCCTTTGGAATAAGATGCTCGAAGACGTCATGGATAAACTTGTGGATATTGTCCACTTTTTACATGTAGAGATTCAAGAATCTTTT-GGGCCCTATGATGGAGCTTTACAATTGAATCAACCTTCAGAGAGCCGTCAGACGTTAGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCATTTCACAGATTGACAACATTGTTTCCCGAAGCACCGTTCCACCACAAAGCACAAGAGATGCGCTCTATCAAGGACTGCCCCCAACTATTAAGTCTGCTCTTCGAAAAAAACTACATAATTGCCCACAACCACAAGAGGTTCCGATCACTGAAATCAGATCTTCAATGGAGAGAACCTTGCAATGGATTATCCCTATTGCCAACAATACAGCCAGAGCTCACCATGGATTCGGATGGGTCGGCGAGTGGGCGAACACAGGGAACGATGCGATGCGGAGGGCGGCTGGGCAGCCAGACGTGATCAAGATCGAGACATTCTACCATGCGGACAAGGCCAAGACGGAGGCGTGCATCCTGGACCTCGTCCTGTGGCTTCACCACCTCATCAGCTACAGCCGCCCAAGCAACGGTGGCAGGTCCAGGTCGCCGAGCAGGTCGCCGGTGCGCTCCCCTCCCCTCACGCCGCCGCACCAGGTGCCGACGACGACGTCGTCGTCCTCGCCGCCACCGCCGGCGGTGGCGAGGCCGAGCGGCGGCACCGGCGGT-GGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCGTCGCGCTCCCTGTCACAGCAGGAGCCAGGAGCTGTCGTCAGCTCGCGGCGGCGGCGGCGCCGGCGGCGACAGCTCGTCGGCGGTGGCAGCCGCGGCGCAGCTGAGCAAGAACGACAGGCTGAGCAAGAGCAGCAACGATGCTCCGGCGCGGAGCGGCGGCGGCGGCGGCGGCGGGAAGCTCTTCCCGCTGAGCAGGAGGCCCTCCTCCGCCGTGGTGTCGCCCGCCGTCGACTTCGACATCGACGGCATCAAGGCGCTGGCGGATGCACAGAAGCGGCAGTGACCGTGACGTCACAGCCACCATCTTCTTCTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAACGCAGCGACGCCGGAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGATGATGAGAAACCAAGATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGATCAATTAATTAATTAATCGCCATTGTATATTGTACGTATAAGGGAG] [+] EMBL OSC109861 [CTCAACCAAACTTGAAAGAAATAGCAGAAGCAGAGATGCAGCAATTGTTGACACTGGTTCGGCACACGGCTGATCTGTACCATGAGTTGCATGCATTAGATAGATTTGAGCAAGATTATCGCCGTAAATTGGAGGAAGAGAAAAAATCAGTTGCTTTTGAAAGAGGGGACACTGTTCAGATTATAAGGCAAGAATTGAAGAGCCAAAGGAGGCATGTGAAAAGCTTGAAGAAAAAGTCCCTTTGGAATAAGATGCTCGAAGACGTCATGGATAAACTTGTGGATATTGTCCACTTTTTACATGTAGAGATTCAAGAATCTTTTGGGGCCCTATGATGGAGC ] [+] EMBL AK106428 [ TTTTGAAAGAGGGGACACTGTTCAGATTATAAGGCAAGAATTGAAGAGCCAAAGGAGGCATGTGAAAAGCTTGAAGAAAAAGTCCCTTTGGAATAAGATGCTCGAAGACGTCATGGATAAACTTGTGGATATTGTCCACTTTTTACATGTAGAGATTCAAGAATCTTTT GGGACCTATGATGGAGCTTTACAATTGAATCAACCTTCAGAGAGCCGTCAGACGTTAGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCATTTCACAGATTGACAACATTGTTTCCCGAAGCACCGTTCCACCACAAAGCACAAGAGATGCGCTCTATCAAGGACTGCCCCCAACTATTAAGTCTGCTCTTCGAAAAAAACTACATAATTGCCCACAACCACAAGAGGTTCCGATCACTGAAATCAGATCTTCAATGGAGAGAACCTTGCAATGGATTATCCCTATTGCCAACAATACAGCCAGAGCTCACCATGGATTCGGATGGGTCGGCGAGTGGGCGAACACAGGGAACGATGCGATGCGGAGGGCGGCTGGGCAGCCAGACGTGATCAAGATCGAGACATTCTACCATGCGGACAAGGCCAAGACGGAGGCGTGCATCCTGGACCTCGTCCTGTGGCTTCACCACCTCATCAGCTACAGCCGCCCAAGCAACGGTGGCAGGTCCAGGTCGCCGAGCAGGTCGCCGGTGCGCTCCCCTCCCCTCACGCCGCCGCACCAGGTGCCGACGACGACGTCGTCGTCCTCGCCGCCACCGCCGGCGGTGGCGAGGCCGAGCGGCGGCACCGGCGGT GGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCGTCGCGCTCCCTGTCACAGCAGGAGCCAGGAGCTGTCGTCAGCTCGCGGCGGCGGCGGCGCCGGCGGCGACAGCTCGTCGGCGGTGGCAGCCGCGGCGCAGCTGAGCAAGAACGACAGGCTGAGCAAGAGCAGCAACGATGCTCCGGCGCGGAGCGGCGGCGGCGGCGGCGGCGGGAAGCTCTTCCCGCTGAGCAGGAGGCCCTCCTCCGCCGTGGTGTCGCCCGCCGTCGACTTCGACATCGACGGCATCAAGGCGCTGGCGGATGCACAGAAGCGGCAGTGACCGTGACGTCACAGCCACCATCTTCTTCTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAACGCAGCGACGCCGGAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGATGATGAGAAACCAAGATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGATCAATTAATTAATTAATCGCCATTGTAT ] [-] EMBL BI305463 [ GACG TGGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCATCTCACAGATTGACAACATTGTTTCCCGAAGCACCGTTCCACCACAAAGCACAAGAGATGCGCTCTATCAAGGACTGCCCCCAACTATTAAGTCTGCTCTTCGAAAAAAACTACATAATTGCCCACAACCACAAGAGGTTCCGATCACTGAAATCAGATCTTCAATGGAGAGAACCTTGCAATGGATTATCCCTATTGCCAACAATACAGCCAGAGCTCACCATGGATTCGGATGGGTCGGCGAGTGGGCGAACACAGGGAACGATGCGATGCGGAGGGCGGCTGGGCAGCCAGACGTGATCAAGATCGAGACATTCTACCATGCGGACAAGGCCAAGACGGAGGCGTGCATCCTGGACCTCGTCCTGTGGCTTCACCACCTCATCAGCTACAGCCGCCCAAGCAACGGTGGCAGGTCCAGGTCGCCGAGCAGGTCGCCGGTGCGCTCCCCTCCCCTCACGCCGCCGCACCAGGTGCCGACGACGACGTCGTCGTCCTCGCCGCCACCGCCGGCGGTGGCGAGGCCGAGCGGCGGCACCGGCGGT GGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCGTCGCGCTCCCGGTCACAGCAGGAGCCAGGAGCTGTCGTCGGCTCGCGGCGGCGGCGGCGCCGGCGGCGACAGCTCG ] [-] EMBL CB673464 [ CCGGCGGTGGGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCGTCGCGCTCCCTGTCACAGCAGGAGCCAGGAGCTGTTGTCAGCTCGCGGCGGCGGCGGCGCCGGCGGCGACAGCTTGTCGGCGGTGGCAGCCGCGGCGCAGCTGAGCAAGAACGACAGGCTGAGCAAGAGCAGCAACGATGCTCCGGCGCGGAGCGGCGGCGGCGGCGGCGGCGGGAAGCTCTTCCCGCTGAGCAGGAGGCCCTCCTCCGCCGTGGTGTCGCCCGCCGTCGACTTCGACATCGACGGCATCAAGGCGCTGGCGGATGCACAGAAGCGGCAGTGACCGTGACGTCACAGCCACCATCTTTTTTTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAACGCAGCGACGCCGGAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGATGATGAGAAACCAAGATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGATCAATTAATTAATTAATCGCCAATGTATATTGTACGTATAAGGGAG] consensusID : consensus_8463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [GATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGNTCAATTAATTAATTAATCGCCNTTGTATATTGTAGGAGAAAGAAAGAAAGAAAAATAGATGGATAGATAGCCCAAGAATTGCAGCTGTCAGGTACTGTACTACCATNAGACAATCATGGATGGACATGTTATATAGTACTCCAGCTGTGCAATGCCTGAAGACTAGTAGTACTACTACATATATCAACAGACTNTGCAGGCACATATANATAGTGACCAAAAACCCTCCTGCTTGTGAATTTTCAACCCTTNTTGTCTTGGAATGGAATGCCCAGTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU181229 [GATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGNTCAATTAATTAATTAATCGCCNTTGTATATTGTAGGAGAAAGAAAGAAAGAAAAATAGATGGATAGATAGCCCAAGAATTGCAGCTGTCAGGTACTGTACTACCATNAGACAATCATGGATGGACATGTTATATAGTACTCCAGCTGTGCAATGCCTGAAGACTAGTAGTACTACTACATATATCAACAGACTNTGCAGGCACATATANATAGTGACCAAAAACCCTCCTGCTTGTGAATTTTCAACCCTTNTTGTCTTGGAATGGAATGCCCAGTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8463#0 CTCAACCAAACTTGAAAGAAATAGCAGAAGCAGAGATGCAGCAATTGTTGACACTGGTTC 60 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 GGCACACGGCTGATCTGTACCATGAGTTGCATGCATTAGATAGATTTGAGCAAGATTATC 120 consensus_8463#1 ------------------------------------------GATCGGTGATGGATGCTT 18 *** * * *** * consensus_8463#0 GCCGTAAATTGGAGGAAGAGAAAAAATCAGTTGCTTTTGAAAGAGGGGACACTGTTCAGA 180 consensus_8463#1 A--ATTAGGGTGTGATTGATACATGNTCAATTAATT---AATTAATCGCCNTTGT--ATA 71 * * * * ** * * *** ** ** ** * * * *** * * consensus_8463#0 TTATAAGGCAAGAATTGAAGAGCCAAAGGAGGCATGTGAAAAGCTTGAAGAAAAAGTCCC 240 consensus_8463#1 TTGTAGGAGAAAGAAAGAAAGA--AAAATAGATGGATAGATAGCCCAAGAATTGCAGCTG 129 ** ** * ** * *** *** ** * * *** * * * consensus_8463#0 TTTGGAATAAGA-TGCTCGAAGACG-TCATGGATAAACTTGTGGATATTGTCCACTTTTT 298 consensus_8463#1 TCAGGTACTGTACTACCATNAGACAATCATGGATGGACATGTT-ATATAGT--ACTCCAG 186 * ** * * * * **** ******** ** *** **** ** *** consensus_8463#0 ACATGTAGAGATTCAAGAATCTTTTGGGCCCTATGATGGAGCTTTACAATTGAATCAACC 358 consensus_8463#1 CTGTGCAATGCCTGAAGACTAGT---AGTACTACTACATA---TATCAACAGACTNTGCA 240 ** * * * **** * * * *** * * * *** ** * * consensus_8463#0 TTCAGAGAGCCGTCAGACGTTAGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCAT 418 consensus_8463#1 GGCACATATANATAGTGACCAAAAACCCTCCTGCTTGTGAATTTTCAA--CCCTTNTTGT 298 ** * * * * * * * ** * * * * * ** * * * consensus_8463#0 TTCACAGATTGACAACATTGTTTCCCGAAGCACCGTTCCACCACAAAGCACAAGAGATGC 478 consensus_8463#1 CTTGGA-ATGGAATGCCCAGTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 356 * * ** ** * ******* ** * * * *** * ** * * consensus_8463#0 GCTCTATCAAGGACTGCCCCCAACTATTAAGTCTGCTCTTCGAAAAAAACTACATAATTG 538 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CCCACAACCACAAGAGGTTCCGATCACTGAAATCAGATCTTCAATGGAGAGAACCTTGCA 598 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 ATGGATTATCCCTATTGCCAACAATACAGCCAGAGCTCACCATGGATTCGGATGGGTCGG 658 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CGAGTGGGCGAACACAGGGAACGATGCGATGCGGAGGGCGGCTGGGCAGCCAGACGTGAT 718 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CAAGATCGAGACATTCTACCATGCGGACAAGGCCAAGACGGAGGCGTGCATCCTGGACCT 778 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CGTCCTGTGGCTTCACCACCTCATCAGCTACAGCCGCCCAAGCAACGGTGGCAGGTCCAG 838 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 GTCGCCGAGCAGGTCGCCGGTGCGCTCCCCTCCCCTCACGCCGCCGCACCAGGTGCCGAC 898 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 GACGACGTCGTCGTCCTCGCCGCCACCGCCGGCGGTGGCGAGGCCGAGCGGCGGCACCGG 958 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CGGTGGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCG 1018 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 TCGCGCTCCCTGTCACAGCAGGAGCCAGGAGCTGTCGTCAGCTCGCGGCGGCGGCGGCGC 1078 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CGGCGGCGACAGCTCGTCGGCGGTGGCAGCCGCGGCGCAGCTGAGCAAGAACGACAGGCT 1138 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 GAGCAAGAGCAGCAACGATGCTCCGGCGCGGAGCGGCGGCGGCGGCGGCGGCGGGAAGCT 1198 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CTTCCCGCTGAGCAGGAGGCCCTCCTCCGCCGTGGTGTCGCCCGCCGTCGACTTCGACAT 1258 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CGACGGCATCAAGGCGCTGGCGGATGCACAGAAGCGGCAGTGACCGTGACGTCACAGCCA 1318 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CCATCTTCTTCTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAACGCAGCGACGC 1378 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CGGAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGA 1438 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 TGATGAGAAACCAAGATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGATCAA 1498 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 TTAATTAATTAATCGCCATTGTATATTGTACGTATAAGGGAG 1540 consensus_8463#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||