These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1584 fasta sequence [CCATTCTTCCCAACCATCTCCACCTTCCCCGCATCCGCAGTCGCCGCCGATCTCCCTCTCCGCTGTCGGAGACGACGCGGCCACCAAACCCTAGCCGCAGCAGCAGCAGCAGCCGCCCATGGCGAGCTCACGCGCGGATCCCCGCCCGCTGGCATGACCGCAGCGGCCGCCGATGGAGCCGGGGCCTTCGTCGCCGTCGCCGTCGTCCGCGTGCGCGGATCACCCCACGCCGGCGCCGGAGGAGGACGAGGAGGGGGGGAGGGGGTGGGTGGTCGTGCCGGCGAGCGAGGTCCCGGGAGCCGACGCGCCCAAGGTCATCGACTGGGAGGACCTGCAGCAGGAGCTCGCACGCGTCTGGAGCCTCTCCGCCGCGCTCGCCACCGCCAGGGAACGCAAGGCGCTGCTCGCCGCGCGCCTCCAGTCCGCGCTCGAGGCAAGGAAGGCTTCCGTTCAGCAGGATAATGAGTTGGCGGAAATCAGGGAAAGAGTGCAAGCACGTGCTGATTTCAT-GTGGGATTTGAAAATGCACACTAAGAAAATGA-CCGAGGATGTGGATGATCGAAGAGAGGAACTCCGCATCAAGATCCGAACCTTGTCAACAACAAGCAATACTCTTAGCACAGCGCGAAATAAACTTAAGGAAGCTGATAAATTGCTGTCAGGGGAAAATGGTCTCCATGTCCGTCTTAAAACTGTGGAAAGGATGTTGCGCACAAGACAGCAATATATGACAGCACAAGTAGCACATTTATATCCTGTGAGACCCTTGATTGAGCGATCTCCAGCTAACAAGCCTAGCTTCTTGAACTCCAGTATTCTCAAAACCAGAGATGCGGAATCAATGGCTCCGAATGGTTCTCAAAATGGACAGGCACCTTTGGCAATTTTGGGTCTCCAACTATCGAAGCTTACGATGAAAAAGACTGGCTACTTTAGTGACAAGACTGAGATTCAGAATTCTGCCACCGCATTGGGTTATGTTGCACATGCAGTGTCCCTTATTGCATCATATCTTGATGTTCCTCTTCGATATCCGCTGCGGTTGGGAGGTTCACGGTCATATGTTCTTGATCGCGCGCCCTCAGTTGAGTCATCGTCCTTAGCTTCTGCTATAAGTTCTGCTCCTCTGAGTACAACCATGCGAACAATGGAATTCCCTCTGTTTTTTGAAAGCCAGGAGACAACAAGATCAGCATATG-CAATATTTTTGCTAAACAAGGATATTGAACAACTTCTGAATCA-CATTGGTGCTGAAAGTCTTGGCCCGAGGCATGTATTAGCTAACCTCAAGCAGCTGACTACTATTGTCCAGTCACAGCAGTACATTTCTAATTAATTTAGTCCCAGAAACATATTTGAAGTTCTGTGAGAGTTTTGCTTACGGCTAAATCCAGAAGCGGTTGGTGCTATTTTTAGCAAGCACCTTTGTTTTCCAGAACACAGATGAGTTAAGGTTTTTCTTTGCTGATATGTTCACTGTAAAATGGATAAATGGATTTGTCACTGTAAAATGTGCTCACTTGGTGTACAGGAAATAGATGAGTAATAAATGAGAAATAGTTTGCATGTTCAAAAAAAAAAAAA] [+] EMBL AK107114 [CCATTCTTCCCAACCATCTCCACCTTCCCCGCATCCGCAGTCGCCGCCGATCTCCCTCTCCGCTGTCGGAGACGACGCGGCCACCAAACCCTAGCCGCAGCAGCAGCAGCAGCCGCCCATGGCGAGCTCACGCGCGGATCCCCGCCCGCTGGCATGACCGCAGCGGCCGCCGATGGAGCCGGGGCCTTCGTCGCCGTCGCCGTCGTCCGCGTGCGCGGATCACCCCACGCCGGCGCCGGAGGAGGACGAGGAGGGGGGGAGGGGGTGGGTGGTCGTGCCGGCGAGCGAGGTCCCGGGAGCCGACGCGCCCAAGGTCATCGACTGGGAGGACCTGCAGCAGGAGCTCGCACGCGTCTGGAGCCTCTCCGCCGCGCTCGCCACCGCCAGGGAACGCAAGGCGCTGCTCGCCGCGCGCCTCCAGTCCGCGCTCGAGGCAAGGAAGGCTTCCGTTCAGCAGGATAATGAGTTGGCGGAAATCAGGGAAAGAGTGCAAGCACGTGCTGATTTCAT GTGGGATTTGAAAATGCACACTAAGAAAATGA CCGAGGATGTGGATGATCGAAGAGAGGAACTCCGCATCAAGATCCGAACCTTGTCAACAACAAGCAATACTCTTAGCACAGCGCGAAATAAACTTAAGGAAGCTGATAAATTGCTGTCAGGGGAAAATGGTCTCCATGTCCGTCTTAAAACTGTGGAAAGGATGTTGCGCACAAGACAGCAATATATGACAGCACAAGTAGCACATTTATATCCTGTGAGACCCTTGATTGAGCGATCTCCAGCTAACAAGCCTAGCTTCTTGAACTCCAGTATTCTCAAAACCAGAGATGCGGAATCAATGGCTCCGAATGGTCCTCAAAATGGACAGGCACCTTTGGCAATTTTGGGTCTCCAACTATCGAAGCTTACGATGAAAAAGACTGGCTACTTTAGTGACAAGACTGAGATTCAGAATTCTGCCACCGCATTGGGTTATGTTGCACATGCAGTGTCCCTTATTGCATCATATCTTGATGTTCCTCTTCGATATCCGCTGCGGTTGGGAGGTTCACGGTCATATGTTCTTGATCGCGCGCCCTCAGTTGAGTCATCGTCCTTAGCTTCTGCTATAAGTTCTGCTCCTCTGAGTACAACCATGCGAACAATGGAATTCCCTCTGTTTTTTGAAAGCCAGGAGACAACAAGATCAGCATATG CAATATTTTTGCTAAACAAGGATATTGAACAACTTCTGAATCA CATTGGTGCTGAAAGTCTTGGCCCGAGGCATGTATTAGCTAACCTCAAGCAGCTGACTACTATTGTCCAGTCACAGCAGTACATTTCTAATTAATTTAGTCCCAGAAACATATTTGAAGTTCTGTGAGAGTTTTGCTTACGGCTAAATCCAGAAGCGGTTGGTGCTATTTTTAGCAAGCACCTTTGTTTTCCAGAACACAGATGAGTTAAGGTTTTTCTTTGCTGATATGTTCACTGTAAAATGGATAAATGGATTTGTCACTGTAAAATGTGCTCACTTGGTGTACAGGAAATAGATGAGTAATAAATGAGAAATAGTTTGCA ] [+] EMBL AU166585 [ GTCTGGAGCCTCTCCGCCGCGCTCGCCACCGCCAGGGAACGCAAGGCGCTGCTCGCCGCGCGCCTCCAGTCCGCGCTCGAGGCAAGGAAGGCTTCCGTTCAGCAGGATAATGAGTTGGCGGAAATCAGGGAAAGAGTGCAAGCACGTGCTGATTTCATNGTGGGATTTGAAAATGCACACTAAGAAAATGACCCGAGGATGTGGATGATCGAAGAGAGGAACTCCGCATCAAGATCCGAACCTTGTCAACAACAAGCAATACTCTTAGCACAGCGCGAAATAAACTTAANGAAGCTGATAAATTGCTGTCANGGGAAAATGGTCTCCATGTCCGTCTTAAAACTGGGGAAAGGATGTTGCGCA ] [+] EMBL CA997995 [ TCCGTTCAGCAGGATAATGAGTTGGCGGAAATCAGGGAAAGAGTGCAAGCACGTGCTGATTTCAT GTGGGATTTGAAAATGCACACTAAGAAAATGA CCGAGGATGTGGATGATCGAAGAGAGGAACTCCGCATCAAGATCCGAACCTTGTCAACAACAAGCAATACTCTTAGCACAGCGCGAAATAAACTTAAGGAAGCTGATAAATTGCTGTCAGGGGAAAATGGTCTCCATGTCCGTCTTAAAACTGTGGAAAGGATGTTGCGCACAAGACAGCAATATATGACAGCACAAGTAGCACATTTATATCCTGTGAGACCCTTGATTGAGCGATCTCCAGCTAACAAGCCTAGCTTCTTGAACTCCAGTATTCTCAAAACCAGAGATGCGGAATCAATGGCTCCGAATGGTTCTCAAAATGGACAGGCACCTTTGGCAATTTTGGGTCTCCAACTATCGAAGCTTACGATGA ] [+] EMBL CA767002 [ gggGATCGAAGAGAGGAACTCCGCATCAAGATCCGAACCTTGTCAACAACAAGCAATACTCTTAGCACAGCGCGAAATAAACTTAAGGAAGCTGATAAATTGCTGTCAGGGGAAAATGGTCTCCATGTCCGTCTTAAAACTGTGGAAAGGATGTTGCGCACAAGACAGCAATATATGACAGCACAAGTAGCACATTTATATCCTGTGAGACCCTTGATTGAGCGATCTCCAGCTAACAAGCCTAGCTTCTTGAACTCCAGTATTCTCAAAACCAGAGATGCGGAATCAATGGCTCCGAATGGTTCTCAAAATGGACAGGCACCTTTGGCAATTTTGGGTCTCCAACTATCGAAGCTTACGATGAAAAAGACTGGCTACTTTAGTGACAAGACTGAGATTCAGAATTCTGCCACCGCATTGGGTTATGTTGCACATGCAGTGTCCCTTATTGCATCATATCTTGATGTTCCTCTTCGATATCCGCTGCGGTTGGGAGGTTCACGGTCATATGTTCTTGATCGCGCGCCTTCAGTTGAGTCATCGTCCTTAGCTTCTGCTATAAGTTCTGCCCCTCTGAGTACAACCATGCGAACAATGGAATTCCCTCTGTTTTTTGAAAGCCAGGAGACAACAAGATCAGCATATG CAATATTTTTGCTAAACAAGGATATTGAACAACTTCTGAATCA CATTGGTGCTGNAAGTCTTGGCCCGAGGCATGTATTAGCTAACCTCAAGCAGCTGACTACTATTGNCCAGTCACAGCAGTACATTTCTAATNAA TTAGTCCCAAAAACATANTTGAAGTTCTGGGAGAGNTTTGCTTACCGGTNAATCCA AANCGGNTGGNGCTATTTTTANC AGCACCNTTGNTTTCan ] [+] EMBL AU166584 [ ACCATGCGAACAATGGAATTCCNTCTGTTTTTTGAAAGCCAGGAGNCAACAAGATCAGCATATGCCAATATTTTTGCTAACCAAGGATATTGANCAACTTCTGAATCACCATTGGTGCTGAAAGTCTTGGCCCGAGGCATGTATTAGCTAACCTCAAGCAGCTGACTACTATTGTCCAGTCNCAGCAGTACATTTCTAATTAATTTAGTCCCAGAAACATATTTGAAGTTCTGTGAGAGTTTTGCTTACGGCTAAATCCAGAAGCGGTTGGTGCTATTTTTAGCAAGCNCCTTTGTTTTCCAGAACNCAGATGAGTTAAGGTTTTTCTTTGCTGATATGTTCACTGTAAAATGGATAAATGGATTTGTCNCTGTAAAATGTGCTCACTTGGTGTACAGGAAATAGATGAGTAATAAATGAGAAATAGTTTGCATGTTCAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||