cluster # 8478

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Oryza sativa
cluster # 8478 cluster # 8478 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8478#0 length = 654 sequences # 4

consensus_8478#1 length = 518 sequences # 1

consensusID : consensus_8478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 654
fasta sequence

                              [GCACCGAGCAGAGAGAAAAGTGTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTCAACGTGCCGACGGTGGTGAGCCC-GCACGCCATCGGCGGCGG-GATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCAGCTNGTGTATCACANAGGACCACGGGGGGTANTCAATGTGCCCCCGGGGTGAGCTGCCCTGTTCTCCGCCGGTGTTTTGGCCCCCTCGAGGTTGCGAGCCCGGCCCTATGGGGGTGCCAACCCTCGCCGGCACCGATCA]

[+] EMBL BE230002             [GCACCGAGCAGAGAGAAAAGTGTGCACACAGCTAGCATGGCGAACCCCCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGTATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTTTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCATGGACGGGGGCCGGAGCGACACCG                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA754447             [                       GCACACAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTCAACGTGCCGACGGTGGTGAGCCC GCACGCCATCGGCGGCGG GATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCA                                                                                                                                           ]
[+] EMBL CA753850             [                            CAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCTGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGNCTGGCGGAGTACAGCGTCAATCTCGGGGAAGGGTTCAACGTGCCGACGNTGGTGAGCCCNCCAC CCATCGGAGGCGGTGATGTTTCTGGTGCTGCGCTGCTCGGTCGATCTCAACTCCGCCTGCCCGGCAGCCNAGCTNGTGTATCACANAGGACCACGGGGGGTANTCAATGTGCCCCCGGGGTGAGCTGCCCTGTTCTCCGCCGGTGTTTTGGCCCCCTCGAGGTTGCGAGCCCGGCCCTATGGGGGTGCCAACCCTCGCCGGCACCGATCA]
[+] EMBL CF196996             [                                                                                                                                                                                                                                                                                                                                                                                                                                 AACGTGCCGACGGTGGTGAGCCC GCACGCCATCGGCGGCGG GATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCAGCNCGTGTAcgg                                                                                                                               ]




>consensus_8478#0
GCACCGAGCAGAGAGAAAAGTGTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCGCC
ATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCG
GTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCG
CCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGG
CTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGG
TGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGCGACGGTGGTGAGGCTG
TCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTCAAC
GTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGCTGC
ACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCAGCTNGTGTATCACANAGGACCACGG
GGGGTANTCAATGTGCCCCCGGGGTGAGCTGCCCTGTTCTCCGCCGGTGTTTTGGCCCCC
TCGAGGTTGCGAGCCCGGCCCTATGGGGGTGCCAACCCTCGCCGGCACCGATCA

consensusID : consensus_8478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [CAGTTCATCACAGAGAGAAAAGTTTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTCAACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCA]

[+] EMBL AK066624             [CAGTTCATCACAGAGAGAAAAGTTTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCGCCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGGCGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGTCGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCGGGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACATGGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGGCGACGGTGGTGAGGCTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTCAACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGCTGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCA]




>consensus_8478#1
CAGTTCATCACAGAGAGAAAAGTTTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCG
CCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGG
CGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGT
CGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCG
GGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACAT
GGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGGCGACGGTGGTGAGG
CTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTC
AACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGC
TGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8478#0      --GCACCGAGCAGAGAGAAAAGTGTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCG 58
consensus_8478#1      CAGTTCATCACAGAGAGAAAAGTTTGCACACAGCTAGCATGGCGAACAAGCTGCAGCTCG 60
                        *  *    ************* ************************************

consensus_8478#0      CCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGG 118
consensus_8478#1      CCATCGCGTTCGTCGTCGTCGTCGTCGTCCTCGGCGCCATGGCGGCATCGGCGGCGGCGG 120
                      ************************************************************

consensus_8478#0      CGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGT 178
consensus_8478#1      CGGTGGCCCCCATGCTGACGATGCACAACCTGTGCCCGTACACGGTGTGGCCGATCGTGT 180
                      ************************************************************

consensus_8478#0      CGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCG 238
consensus_8478#1      CGCCGGACAGTGGCTCGCCGCCCATCGCCGACGGGATACGGCTGGAGGGCCGCGGCGTCG 240
                      ************************************************************

consensus_8478#0      GGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACAT 298
consensus_8478#1      GGCTGAGGTCGCTCAACCTCCCGGCGGGGTTCTGGTCGGGGCGCGTCGTGCCGCGCACAT 300
                      ************************************************************

consensus_8478#0      GGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGG-CGACGGTGGTGAGG 357
consensus_8478#1      GGTGCAGGGACGGCGGGCGGTGCGACACCGGGAACGCGCCGCCGGGCGACGGTGGTGAGG 360
                      ********************************************* **************

consensus_8478#0      CTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTC 417
consensus_8478#1      CTGTCGTTCAACGGCGCCGGCGGGCTGGCGGAGTACAGCGTCAACCTCGGGGAAGGGTTC 420
                      ************************************************************

consensus_8478#0      AACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGC 477
consensus_8478#1      AACGTGCCGACGGTGGTGAGCCCGCACGCCATCGGCGGCGGGATGTGCCCGGCGCTGGGC 480
                      ************************************************************

consensus_8478#0      TGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCAGCTNGTGTATCACANAGGACCA 537
consensus_8478#1      TGCACGGCCGACCTCAACGCCGGGTGCGCGGCGGGGCA---------------------- 518
                      **************************************                      

consensus_8478#0      CGGGGGGTANTCAATGTGCCCCCGGGGTGAGCTGCCCTGTTCTCCGCCGGTGTTTTGGCC 597
consensus_8478#1      ------------------------------------------------------------
                                                                                  

consensus_8478#0      CCCTCGAGGTTGCGAGCCCGGCCCTATGGGGGTGCCAACCCTCGCCGGCACCGATCA 654
consensus_8478#1      ---------------------------------------------------------