These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1290 fasta sequence [GCGGAATTTTGTTTTGTTTTTTTTTTCTCCCCATCCCATCCCGGCCCTGACGCCGCCGCACGACGGCCGGCCGCGGCCGCCGCCGGGGAGGTCGCCGCCGATGAGCCCCACCGCGCCGTCGCGTACGGGTCGTGCTCTCGCCCTTCTCCCTGTCCTGGTGCTGCTGCTCCTCGTCTGCTCGCCAGCCGCGTCAGCTGGAGAACAGAAAGGTGTATGTGTTTCGCCTGGTGGACGATTCCCTGCCTTCTCATCTGAAGGTAAGCGTCCTGGAAGAGCAGCTAAGGGGCGCAGAGATCTGGCACTATGTAGAGTATTCCGGCAGAACACGTGTTGCGATGTGTCCCAGACATTTTCTGCCCTGCTCTCAGTGAGAAAGCTTGCATCGACTGGTGAAGGTAGTCAAGAATGCCTTCATCTGTGGGAACTGCTCGAGTGTTCGATTTGTGATCCACGGGTGGGTGTTAGGCCTGGACCTCCAGTTATATGTGCATCATTCTGTGACATGGTTTTCAAAGCTTGCTCAGAGGCGTACTTCGCTATCGATGTGAAAACACAGGCATTGTCTCCATGTGGTTTAGGTGACATCCTTTGTGGCAAAGCACATAAATGGGTCTCTAATGGCACAGAGCTATGTCGCTCTGCTGGTTTCTCTGTGCAAGCTTTGGAGACCACCTCGGGTGGAGTGGATGACACTTTCTGCTATGGTGGGAAAGCAAG-TTTTGATGCCATCTCTAGTTCATGGACATCTTCAAAAGAGCGTCCAGTATTAAGTGATGTGGCCTCTTGGAATCTTGAAGATTTTCGCAGATGGGCAAGAGAAATGCCTGCTAGTGAAAGAGTTTCATGGGCAATTGGAGGAATGGTTCTTACAGCAGGCCTTATATTTATCAGTAAACGGAAGAGCTACATTCCTGGCCAAAAGCAAGCTGCTATCGCCCGCAATGTGAGAAAGCTGGAATCAAGAGTTAACCCACAGCAGCTTAGGCGAAATTAGGAATGCGTAGGTAGCATGGATTCCTATTTCCACCACTTTGTGATTCTTATATTTGAATCTGCAATGAATTTACTGTTGAAGATGTCCTCTACACTGGTGGTCAGATAGATGGATGGCGTCACTGGTTACAACCTCCTTTGTCATCCTTGCGTAGAAGAGCAGAAGAGATCTATTAATTCTTGTTCAGGTTATTTCTGTCTGCAGGATTTATAGATTTGCTTGAACATATGTATATAGTTTTGGAATGGAATCTTCAGAGATTTTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK070526 [GCGGAATTTTGTTTTGTTTTTTTTTTCTCCCCATCCCATCCCGGCCCTGACGCCGCCGCACGACGGCCGGCCGCGGCCGCCGCCGGGGAGGTCGCCGCCGATGAGCCCCACCGCGCCGTCGCGTACGGGTCGTGCTCTCGCCCTTCTCCCTGTCCTGGTGCTGCTGCTCCTCGTCTGCTCGCCAGCCGCGTCAGCTGGAGAACAGAAAGGTGTATGTGTTTCGCCTGGTGGACGATTCCCTGCCTTCTCATCTGAAGGTAAGCGTCCTGGAAGAGCAGCTAAGGGGCGCAGAGATCTGGCACTATGTAGAGTATTCCGGCAGAACACGTGTTGCGATGTGTCCCAGACATTTTCTGCCCTGCTCTCAGTGAGAAAGCTTGCATCGACTGGTGAAGGTAGTCAAGAATGCCTTCATCTGTGGGAACTGCTCGAGTGTTCGATTTGTGATCCACGGGTGGGTGTTAGGCCTGGACCTCCAGTTATATGTGCATCATTCTGTGACATGGTTTTCAAAGCTTGCTCAGAGGCGTACTTCGCTATCGATGTGAAAACACAGGCATTGTCTCCATGTGGTTTAGGTGACATCCTTTGTGGCAAAGCACATAAATGGGTCTCTAATGGCACAGAGCTATGTCGCTCTGCTGGTTTCTCTGTGCAAGCTTTGGAGACCACCTCGGGTGGAGTGGATGACACTTTCTGCTATGGTGGGAAAGCAAG TTTTGATGCCATCTCTAGTTCATGGACATCTTCAAAAGAGCGTCCAGTATTAAGTGATGTGGCCTCTTGGAATCTTGAAGATTTTCGCAGATGGGCAAGAGAAATGCCTGCTAGTGAAAGAGTTTCATGGGCAATTGGAGGAATGGTTCTTACAGCAGGCCTTATATTTATCAGTAAACGGAAGAGCTACATTCCTGGCCAAAAGCAAGCTGCTATCGCCCGCAATGTGAGAAAGCTGGAATCAAGAGTTAACCCACAGCAGCTTAGGCGAAATTAGGAATGCGTAGGTAGCATGGATTCCTATTTCCACCACTTTGTGATTCTTATATTTGAATCTGCAATGAATTTACTGTTGAAGATGTCCTCTACACTGGTGGTCAGATAGATGGATGGCGTCACTGGTTACAACCTCCTTTGTCATCCTTGCGTAGAAGAGCAGAAGAGATCTATTAATTCTTGTTCAGGTTATTTCTGTCTGCAGGATTTATAGATTTGCTTGAACATATGTATATAGTTTTGGAATGGAATCTTCAGA ] [+] EMBL CB668903 [ CCATCCCGGCCCTGACGCCGCCGCACGACGGCCGGCCGCGGCCGCCGCCGGGGAGGTCGCCGCCGATGAGCCCCACCGCGCCGTCGCGTACGGGTCGTGCTCTCGCCCTTCTCCCTGTCCTGGTGCTGCTGCTCCTCGTCTGCTCGCCAGCCGCGTCAGCTGGAGAACAGAAAGGTGTATGTGTTTCGCCTGGTGGACGATTCCCTGCCTTCTCATCTGAAGGTGAGCGTCCTGGAATAGCAGCTAAGGGGCGCAGAGATCTGGCACTATGTAGAGTATTCCGGCAGAACACGTGTTGCGATGTGTCCCAGACATTTTCTGCCCTGCTCTCAGTGAGAAAGCTTGCATCGACTGGTGAAGGTATTCAAGAATGCCTTCTTCTGTGGGAACTGCTCGAGTGTTCGATTTGTGATCCACGGGTGGGTGTTAGGCCTGTACCTCCAGTTATATGTGCATCATTCTGTGACATGGTTTTCAAAGCTTGCTCAGAGGCGTACTTCGCTATCGATGTGAAAACACAGGCATTGTCTCCATGTGGTTTAGGTGACATCCTTTGTGGCAGAGCACATAAATGGGTCTCTAATGGCACAGAGCTATGTCGCTCTGCTGGTGTCTCTGTGCAAGCTTTGGAGACCACCTCGGGTGGAGTGGATGACACTTTCTGCTATGGCGGGAAAGCAAG TTTTGA ] [-] EMBL CB668904 [ GCATCATTCTGTGACATGGTTTTCAAAGCTTGCTCAGAGGCGTACTTCGCTATCGATGTGAAAACACAGGCATTGTCTCCATGTGGTTTAGGTGACATCCTTTGTGGCAAAGCACATAAATGGGTCTCTAATGGCACAGAGCTATGTCGCTCTGCTGGTTTCTCTGTGCAAGCTTTGGAGACCACCTCGGGTGGAGTGGATGACACTTTCTGCTATGGTGGGAAAGCAAG TTTTGATGCCATCTCTAGTTCATGGACATCTTCAAAAGAGCGTCCAGTATTAAGTGATGTGGCCTCTTGGAATCTTGAAGATTTTCGCAGATGGGCAAGAGAAATGCCTGCTAGTGAAAGAGTTTCATGGGCAATTGGAGGAATGGTTCTTACAGCAGGCCTTATATTTATCAGTAAACGGAAGAGCTACATTCCTGGCCAAAAGCAAGCTGCTATCGCCCGCAATGTGAGAAAGCTGGAATCAAGAGTTAACCCACAGCAGCTTAGGCGAAATTAGGAATGCGTAGGTAGCATGGATTCCTATTTCCACCACTTTGTGATTCTTATATTTGAATCTGCAATGAATTTACTGTTGAAGATGTCCTCTACACTGGTGGTCAGATAGATGGATGGCGTCACTGGTTACAACCTCCTTTGTCATCCTTGCGTAGAAGAGCAGAAGAGATCTATTAATTCTTGTTCAGGTTATTTCTGTCTGCAGGATTTATAGATTTGCTTGAACATATGTATATAGTTTTGGAGGGGAATCTTCAGAGATTTTCTTCAtactcctt ] [+] EMBL AU093413 [ TCTCTGTGCAAGCTTTGGANACCACCTCGGGTGGAGTGGATGACACTTTCTGCTATGGTGGGAAAGCAAGTTTTTGATGCCATCTCTAGTTCATGGACATCTTCAAAAGAGCGTCCAGTATTAAGTGATGTGGCCTCTTGGAATCTTGAAGATTTTCGCAGATGGGCAAGAGAAATNCCTGCTAGTGAAAGAGTTTCATGGGCAATTGGAGGAATGGTTCTTACAGCAGGCCTTATATTTATCAGTAAACGGAAGAGCTACATTCCTGGCCAAAAGCAAGCTGCTATCGCCCGCAATGTGAGAAAGCTGGAATCAAGAGTTAACCCACAGCAGCTTAGGCGAAATTAGGAATGCGTAGGTAGCATGGATTCCTATTTCCACCACTTTGTGATTCTTATATTTGAATCTGCAATGAATTTACTGTTGAAGATGTCCTCTACACTGGTGGTCAGATAGATGGATGGCGTCACTGGTTACAACCTCCTTTGTCATCCTTTCGTAGAAGAGCAGAAGAGATCTATTAATTCTTGTTCAGGTTATTTCTGTCTGCAGGATTTATAGATTTGCTTGAACATATGTATATAGTTTTGGAATGGAATCTTCAGAGATTTTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU086007 [ CTGGAATCAAGAGTTAACCCACAGCAGCTTAGGCGAAATTAGGAATGCGTAGGTAGCATGGATTCCTATTTCCACCACTTTGTGATTCTTATATTTGAATCTGCAATGAATTTACTGTTGAAGATGTCCTCTACACTGGTGGTCAGATAGATGGATGGCGTCACTGGTTACAACCTCCTTTGTCATCCTTTCGTAGAAGAGCAGAAGNGATCTATTAATTCTTGTTCAGGTTATTTCTGTCTGCAGGATTTATAGATTTGCTTGAACATATGTATATAGTTTTGGAATGGAATCTTCAGAGATTTTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||