cluster # 8484

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Oryza sativa
cluster # 8484 cluster # 8484 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8484#0 length = 906 sequences # 2

consensus_8484#1 length = 808 sequences # 3

consensusID : consensus_8484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 906
fasta sequence

                              [TCCTTCACCACCACCACCCACGAGTTCCACACGGAGGTCAGGAGGTGACTGATTCCTTGGCGGCTTCCTCCTCCCGCGAGCTGTGAAAATTTTGTAACTACTACGTACTGGTCGCTCGTCGGAGCAGTAGTGGTTGTGGTGGTAGCAGTGGCATGGCCTCCTCGCTGGCGTCCGCCTCGTGGGTGGTGCTGCCGCCGGTGCAGGCTCGGGTTGCTGCGGCGGTGGCGGTGGGGCCGACATGCCGCGTGCTGCTAGCCTACACGCCGCTGCTGTCCGGGTCGGCGCNGCGGCGGGTGGTGGGGCGGCCTCTCGCNCCGCCGCGGTGCTCGGCGCTCGANGATCCCGGCCCCAGCGACGGCGGGGAGGGGAACGGCAGGGTGGTGGAGGAGGGGGAGGAGGAGGTGGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGGCTTCTTCAGATGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCTTCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTTCAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGCTGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGCAGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTCAAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGCCCACAT]

[+] EMBL AU056664             [TCCTTCACCACCACCACCCACGAGTTCCACACGGAGGTCAGGAGGTGACTGATTCCTTGGCGGCTTCCTCCTCCCGCGAGCTGTGAAAATTTTGTAACTACTACGTACTGGTCGCTCGTCGGAGCAGTAGTGGTTGTGGTGGTAGCAGTGGCATGGCCTCCTCGCTGGCGTCCGCCTCGTGGGTGGTGCTGCCGCCGGTGCAGGCTCGGGTTGCTGCGGCGGTGGCGGTGGGGCCGACATGCCGCGTGCTGCTAGCCTACACGCCGCTGCTGTCCGGGTCGGCGCNGCGGCGGGTGGTGGGGCGGCCTCTCGCNCCGCCGCGGTGCTCGGCGCTCGANGATCCCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB624421             [                                                                                                                                                                                                           GCTCGGTTTGCTGCGGCGGTGGCGGTGGGGCCGACATGCCGCGTGCTGCTAGCCTACACGCCGCTGCTGTCCGGGTCGGCGCGGCGGCGGGTGGTGGGGCGGCCTCTCGCGCCGCCGCGGTGCTCGGCGCTCGAGGATCCCGGCCCCAGCGACGGCGGGGAGGGGAACGGCAGGGTGGTGGAGGAGGGGGAGGAGGAGGTGGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGGCTTCTTCAGATGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCTTCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTTCAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGCTGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGCAGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTCAAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGCCCACAT]




>consensus_8484#0
TCCTTCACCACCACCACCCACGAGTTCCACACGGAGGTCAGGAGGTGACTGATTCCTTGG
CGGCTTCCTCCTCCCGCGAGCTGTGAAAATTTTGTAACTACTACGTACTGGTCGCTCGTC
GGAGCAGTAGTGGTTGTGGTGGTAGCAGTGGCATGGCCTCCTCGCTGGCGTCCGCCTCGT
GGGTGGTGCTGCCGCCGGTGCAGGCTCGGGTTGCTGCGGCGGTGGCGGTGGGGCCGACAT
GCCGCGTGCTGCTAGCCTACACGCCGCTGCTGTCCGGGTCGGCGCNGCGGCGGGTGGTGG
GGCGGCCTCTCGCNCCGCCGCGGTGCTCGGCGCTCGANGATCCCGGCCCCAGCGACGGCG
GGGAGGGGAACGGCAGGGTGGTGGAGGAGGGGGAGGAGGAGGTGGATGCCTCATTTTTAA
TATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGG
GAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGGCTTCTTCAGA
TGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCT
TCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTT
CAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGC
TGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGC
AGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTC
AAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGC
CCACAT

consensusID : consensus_8484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 808
fasta sequence

                              [TCTCTGAAAGTGGACTAATGTCCGATTTCATAGCAACATGTCTATGATTTCATGGGAGTAAGATGTCCCATCAAAGGTATGATTGTCTGTACACAATAATCTGCTAATTGTGTATACATGCATATCTATTTGTCTACCAACACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATCTACCTTGATCTCCTTGTCCCCAAACCCCAAACCCAGTCAGTGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGTCTTCTTCAGATGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCTTCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTTCAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGCTGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGCAGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTCAAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGCCCACATGCATAACACCGTCGAGAAAACTCCGGTGTACAATGCTGGTATCCAAGGAAATGAAGTTGCCGTGTCCAAAAACATACCAA]

[+] EMBL CB624422             [TCTCTGAAAGTGGACTAATGTCCGATTTCATAGCAACATGTCTATGATTTCATGGGAGTAAGATGTCCCATCAAAGGTATGATTGTCTGTACACAATAATCTGCTAATTGTGTATACATGCATATCTATTTGTCTACCAACACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATCTACCTTGATCTCCTTGTCCCCAAACCCCAAACCCAGTCAGTGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGTCTTCTTCAGATGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCTTCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTTCAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGCTGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGCAGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTCAAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGCCCACATGCATAACACCGTCGAGAAAACTCCGGTGTACAATGCTGGTATCCAAGGAAATGAAGTTGCCGTGTCCAAAAACATACCAA]
[-] EMBL AU056665             [                       ttTTTCATANCAACATGTCTATGATTTCATGGGAGTAAGATGTCCCATCAAAGGTATGATTGTCTGTACACAATAATCTGCTAATTGTGTATACATGCATATCTATTTGTCTACCANCACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATCTACCTTGATCNCCTTGTCCCCAAACCCCAAACCCAGTCAGNGATGCCTCATTTTTAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AI978494             [                                                  CATGGGAGTAAGATGTCCCATCAAAGGTATGATTGTCTGTACACAATAATCTGCTAATTGTGTATACATGCATATCTATTTGTCTACCAACACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATCTACCTTGATCTCCTTGTCCCCAAACCCCAAACCCAGTCAGTGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGTCTTCTTCAGATGATGCCTTTTTTGCCTTNNCGTTNNACTACAACGTTTTGTCCTNNNTCTCTAATCGnnnnn                                                                                                                                                                                                                                                                                                                                                                                                ]




>consensus_8484#1
TCTCTGAAAGTGGACTAATGTCCGATTTCATAGCAACATGTCTATGATTTCATGGGAGTA
AGATGTCCCATCAAAGGTATGATTGTCTGTACACAATAATCTGCTAATTGTGTATACATG
CATATCTATTTGTCTACCAACACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGC
TAATCTACCTTGATCTCCTTGTCCCCAAACCCCAAACCCAGTCAGTGATGCCTCATTTTT
AATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTAT
GGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGTCTTCTTCA
GATGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGG
CTTCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGT
TTCAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGA
GCTGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCAT
GCAGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGC
TCAAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCT
GCCCACATGCATAACACCGTCGAGAAAACTCCGGTGTACAATGCTGGTATCCAAGGAAAT
GAAGTTGCCGTGTCCAAAAACATACCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8484#0      TCCTTCACCACCACCACCCACGAGTTCCACACGGAGGTCAGGAGGTGACTGATTCCTTGG 60
consensus_8484#1      ------------------------------------------------------------
                                                                                  

consensus_8484#0      CGGCTTCCTCCTCCCGCGAGCTGTGAAAATTTTGTAACTACTACGTACTGGTCGCTCGTC 120
consensus_8484#1      ------------------------------------------------------------
                                                                                  

consensus_8484#0      GGAGCAGTAGTGGTTGTGGTGGTAGCAGTGGCATGGCCTCCTCGCTGGCGTCCGCCTCGT 180
consensus_8484#1      -----------------------------------------TCTCTGAAAGTGGACTAAT 19
                                                               ** ***      * **  *

consensus_8484#0      GGGTGGTGCTGCCGCCGGTGCAGGCTCGGGTTGCTGCGGCGGTGGCGGTGGGGCCGACAT 240
consensus_8484#1      GTCCGATTTCATAGCAA---CATGTCTATGATTTCATGGGAGTAA-GATGTCCCATCAAA 75
                      *   * *      **     ** *     * *     **  **   * **   *    * 

consensus_8484#0      GCCGCGTGCTGCTAGCCTACACGCCGCTGCTGTCCGGGTCGGCGCNGCGGCGGGTGGTGG 300
consensus_8484#1      GGTATG-ATTGTCTGTACACAATAATCTGCTAATTGTGT--ATACATGCATATCTATTTG 132
                      *    *   **   *   ***     *****    * **     *         *  * *

consensus_8484#0      GGCGGCCTCTCGCNCCGCCGCGGTGCTCGGCGCTCGANGATCCCGGCCCCAGCGACGGCG 360
consensus_8484#1      -------TCTACCAACACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATC 185
                             ***  *  * *  * *** *   * * *     *  *   *    **      

consensus_8484#0      GGGAGGGGAACGGCAGGGTGGTGGAGGAGGGGGAGGAGGAGGTGGATGCCTCATTTTTAA 420
consensus_8484#1      TACCTTG--ATCTCCTTGTCCCCAAACCCCAAACCCAGTCAGTG-ATGCCTCATTTTTAA 242
                            *  *   *   **     *           **   *** ***************

consensus_8484#0      TATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGG 480
consensus_8484#1      TATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGG 302
                      ************************************************************

consensus_8484#0      GAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGGCTTCTTCAGA 540
consensus_8484#1      GAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGTCTTCTTCAGA 362
                      ************************************************* **********

consensus_8484#0      TGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCT 600
consensus_8484#1      TGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCT 422
                      ************************************************************

consensus_8484#0      TCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTT 660
consensus_8484#1      TCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTT 482
                      ************************************************************

consensus_8484#0      CAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGC 720
consensus_8484#1      CAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGC 542
                      ************************************************************

consensus_8484#0      TGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGC 780
consensus_8484#1      TGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGC 602
                      ************************************************************

consensus_8484#0      AGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTC 840
consensus_8484#1      AGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTC 662
                      ************************************************************

consensus_8484#0      AAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGC 900
consensus_8484#1      AAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGC 722
                      ************************************************************

consensus_8484#0      CCACAT------------------------------------------------------ 906
consensus_8484#1      CCACATGCATAACACCGTCGAGAAAACTCCGGTGTACAATGCTGGTATCCAAGGAAATGA 782
                      ******                                                      

consensus_8484#0      --------------------------
consensus_8484#1      AGTTGCCGTGTCCAAAAACATACCAA 808