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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 987 fasta sequence
[TAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTGGATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGCGAACTGCCGACGACGACGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGCGGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCGTCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGAGTTCCCTCACGACGGCGACAGTGACAGCTGATCGAGGCGGCGGCG-GCGGCGGCCATGGACGGCGACGGT-CACTG-TTCGTGAAGGTGTACATGGAGGGCGTCCCCATCGGCAGGAAGCTGGACCTGCTGCCGCTAGACGGCTACAAAGGTCTCGTCGCACGGCTCGCCTCCATGTTCAGAGCATCCATCACCTATCATCATTGCCATCGACAGTTCGCCGTCGTCGGGATGAAGACGAACAAGGTTCATCATGTTCTGACATACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCA-TGGGAGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCA-GAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGAGCA-ATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTA-CTAGTAAAAGCATAGTGATATTGAG-CAGAGGATATTGTACAAAATATATTGTACACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCATTTTACTTCTCAGTCTAGAATAATTTATTCCGAACTGGCAATTTTACTGTATGAAAAA]
[+] EMBL AK066518 [TAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTGGATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGCGAACTGCCGACGACGACGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGCGGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCGTCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGAGTTCCCTCACGACGGCGACAGTGACAGCTGATCGAGGCGGCGGCG GCGGCGGCCATGGACGGCGACGGT CACTG TTCGTGAAGGTGTACATGGAGGGCGTCCCCATCGGCAGGAAGCTGGACCTGCTGCCGCTAGACGGCTACAAAGGTCTCGTCGCACGGCTCGCCTCCATGTTCAGAGCATCCATCACCTATCATCATTGCCATCGACAGTTCGCCGTCGTCGGGATGAAGACGAACAAGGTTCATCATGTTCTGACATACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCA TGGGAGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCA GAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGAGCA ATTTAGATTTGAGATGATTGTTTTCGGGAGCGGAAATTTA CTAGTAAAAGCATAGTGATATTGAG CAGAGGATATTGTACAAAATATATTGTACACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCATTTTACTTCTCAGTCTAGAATAATTTATTCCGAACTGGCAATTTTACTGTATGAAAAA]
[+] EMBL BI813300 [ GCGTGCGGC GCCAT GACGGCGACGTTCCACTGTTTCGTGAAGGTGTACATGGAGGGCGTCCCCATCGGCAGGAA CTGGACCTGCTGCCGCTGGACGGCTAC AAGGTCTCGTCGCACGGCTTGCCTCCATGTTCAGAGCATCCATCACCTATCATCATTGCCATCGACAGTTCGCCGTCGTCGGGATGAAGACGAACAAGGTTCATCATGTTCTGACATACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCACTGGGA CTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCA GAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGAGCACATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTA CTAGTAAAAGCATAGTGATATTGAG CAGAGGATATTGTACAAAATATATTGTACACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCCTTTTACTTCTCAaaaaaaaaa ]
[+] EMBL BM419740 [ GCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCACGAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGAGCA ATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTACCTAGTAAAAGCATAGTGATATTGAGCCAGAGGATATTGTAC AAATATATTGTACACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCATTTTACTTCTC ]
consensusID : consensus_8488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence
[CATCGCAGGAGCTGACCTCTTCCCTGGGCCGGCTACCAAAGGTTTTCTTNCCCCGGGTNCCCCCCATTGTGCAGGACNCCCCCTCCCCTATTCATCCGTNCCATTCGACAGTTNCCCCTTCTTCGGGATGAAAGACGAACCAAGTTTCATCATGTTCTGACATTCCGAAGACCAGGAGGAGACTGGATGATGCCTGGAGACGTCCCATGGGAGTATGCCAAGCTAGCTCAGCTCTTGACCACCCTAATTTGTATATTTATTTAGACTGATTATAGTGATTAAATTGGCATGAGTTTTCCNAAACCACGAAACCCTGATATATTTGTCTTTTTTCTTCTGTTGATTGAATTCTCAAATTATATCTTTTGAACTAATTATGGGATTCNCCCTTAATGCTNGTGTGNTGTTTTTTGGATGAGGCAGGCTGGTTCCCTGACCAAGCGTGAAGAGATTGAGGATTCGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGGTTAACCACGGATGGTCAATTAATTCTTCCAGAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGACCAATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTACTAGTAAAAGCATAGTGATATTGACCAGAGGATATTGTCACAAATATATNGTACACACTAGTAAAAGAAAAGAAACATATACTATCGAAATACCCTTTTACTTCTCAAAA]
[+] EMBL BM419237 [CATCGCAGGAGCTGACCTCTTCCCTGGGCCGGCTACCAAAGGTTTTCTTNCCCCGGGTNCCCCCCATTGTGCAGGACNCCCCCTCCCCTATTCATCCGTNCCATTCGACAGTTNCCCCTTCTTCGGGATGAAAGACGAACCAAGTTTCATCATGTTCTGACATTCCGAAGACCAGGAGGAGACTGGATGATGCCTGGAGACGTCCCATGGGAGTATGCCAAGCTAGCTCAGCTCTTGACCACCCTAATTTGTATATTTATTTAGACTGATTATAGTGATTAAATTGGCATGAGTTTTCCNAAACCACGAAACCCTGATATATTTGTCTTTTTTCTTCTGTTGATTGAATTCTCAAATTATATCTTTTGAACTAATTATGGGATTCNCCCTTAATGCTNGTGTGNTGTTTTTTGGATGAGGCAGGCTGGTTCCCTGACCAAGCGTGAAGAGATTGAGGATTCGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGGTTAACCACGGATGGTCAATTAATTCTTCCAGAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGACCAATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTACTAGTAAAAGCATAGTGATATTGACCAGAGGATATTGTCACAAATATATNGTACACACTAGTAAAAGAAAAGAAACATATACTATCGAAATACCCTTTTACTTCTCAAAA]
consensusID : consensus_8488#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[ACCAGCTGAATAGCTGATGGCGGTGCAACCACTAAAACACCGTACCCATCTCTCTCTCTCTTTCTCTCTATAAATTTGACACAATAAAAAGAGGGGTCATCGTTGGGTGCTCCTCATTTCTCTAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTGGATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGCGAACTGCCGACGACGACGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGCGGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCGTCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGCAAGATTTCGATCTCTGATCATTCTGCACACCTACTGCTTTAATTTCAGAGAAATTTTAAGATACTTGAGAAGGTATTCGATACATAGTCGTAAGAAGTTTGCTTTCGGTCTTTTCGGTTTTCGTTTTTTTTTCCTCCCTTGTTCCCTGGCAATGGCCATTCGACCGGTTGCATCGTGTAATTGAAATCTTGCCTTTTCTAATATATTGACATGTAACTCTTTTGCGCATTCGTGAAAAAAAGAAA]
[+] EMBL AK108275 [ACCAGCTGAATAGCTGATGGCGGTGCAACCACTAAAACACCGTACCCATCTCTCTCTCTCTTTCTCTCTATAAATTTGACACAATAAAAAGAGGGGTCATCGTTGGGTGCTCCTCATTTCTCTAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTGGATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGCGAACTGCCGACGACGACGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGCGGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCGTCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGCAAGATTTCGATCTCTGATCATTCTGCACACCTACTGCTTTAATTTCAGAGAAATTTTAAGATACTTGAGAAGGTATTCGATACATAGTCGTAAGAAGTTTGCTTTCGGTCTTTTCGGTTTTCGTTTTTTTTTCCTCCCTTGTTCCCTGGCAATGGCCATTCGACCGGTTGCATCGTGTAATTGAAATCTTGCCTTTTCTAATATATTGACATGTAACTCTTTTGCGCATTCGTGAAAAAAAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8488#0 ------------------------------------------------------------
consensus_8488#2 ACCAGCTGAATAGCTGATGGCGGTGCAACCACTAAAACACCGTACCCATCTCTCTCTCTC 60
consensus_8488#1 -----------------CATCGCAGGAGCTGACCTCTTCCCTGGGCCGGCTACCAAAGGT 43
consensus_8488#0 ------------------------------------------------------------
consensus_8488#2 TTTCTCTCTATAAATTTGACACAATAAAAAGAGGGGTCATCGTTGGGTGCTCCTCATTTC 120
consensus_8488#1 TTTCTTNCCCCGGGTNCCCCCCATTGTGCAGGACNCCCCCTCCCCTATTCATC-CGTNCC 102
consensus_8488#0 --TAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTG 58
consensus_8488#2 TCTAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTG 180
consensus_8488#1 ATTCGACAGTTNCCCCTTCTTCGGGATGAAAGACGAACCAAGTTTCATCAT--GTTCTGA 160
* * * * * ***** * * * * * *****
consensus_8488#0 GATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGA 118
consensus_8488#2 GATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGA 240
consensus_8488#1 CATTCCGAAGACCAGGAGGAGACTGGATGATGCCTGGAGACGTCCCATGGGAGTATGCCA 220
** * **** * **** * * * * * *
consensus_8488#0 GTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGC--GAACTGCCGACGACGACG 176
consensus_8488#2 GTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGC--GAACTGCCGACGACGACG 298
consensus_8488#1 AGCTAGCTCAGCTCTTGACCACCCTAATTTGTATATTTATTTAGACTGATTATAGTGATT 280
** * ***** * * * ** * * **** * **
consensus_8488#0 ACGACGGCGCCGG----CGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGC 232
consensus_8488#2 ACGACGGCGCCGG----CGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGC 354
consensus_8488#1 AAATTGGCATGAGTTTTCCNAAACCACGAAACCCTGATATATTTGTCTTTTTTCTTCTGT 340
* *** * * ** ***** * * * * * * *
consensus_8488#0 -GGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCG 291
consensus_8488#2 -GGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCG 413
consensus_8488#1 TGATTGAATTCTCAAATTATATC--TTTTGAACTAATTATGGGATTCNCCCTTAATGCTN 398
* * * * *** ** ** * ** ** **** *
consensus_8488#0 TCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGAGTTCCCTCACGACGGCGACAG 351
consensus_8488#2 TCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGG--------CAAGATTTCGAT-- 463
consensus_8488#1 GTGTGNTGTTTTTTGGATGAGGCAGGCTGGTTCCCTGACCAAGCGTGAAGAGATTGAGGA 458
** * ** * ** * * ** **
consensus_8488#0 TGACAGCTGATCGAG-GCGGCGGCGGCGGCGGCCATGGACGGCGACGGTCACTGTTCGTG 410
consensus_8488#2 CTCTGATCATTCTGC-ACACCTACTGCTTTAATTTCAGA-GAAATTTTAAGATACTTGAG 521
consensus_8488#1 TTCGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAA---TTGGGTTAACCACG 515
* * ** ** * *
consensus_8488#0 AAGGTGTACATGGAGGGCGTCCCCATCGGCAGGAAGCTGGACCTGCTGCCGCTAGACGGC 470
consensus_8488#2 AAGGTATTCG--------ATACATAGTCGTAAGAAGTTTG-CTTTCGGTCTTT--TCGGT 570
consensus_8488#1 GA--TGGTCA--------ATTAATTCTTCCAGAGTTCTTGGATTTCATTCATTC-TTACT 564
* * * * * * * * * * *
consensus_8488#0 TACAAAGGTCTCGTCGCACGGCTCGCCTCCATGTTCAGAGCATCCATCACCTATCATCAT 530
consensus_8488#2 TTT--CGTTTTTTTTTCCTCCCTTGTTCCCTGGCAATGGCCATTCGACCGGTTGCATCGT 628
consensus_8488#1 TTGCTCATTTTGGTGGACCAATTTAGATTTGAG--ATGATTGTTTTCGGGAGCGAAAATT 622
* * * * * * * * * *
consensus_8488#0 TGCCATCGACAGTTCGCCGTCGTCGGGATGAAGACGA-ACAAGGTTCATCATGTTCTGAC 589
consensus_8488#2 -GTAATTGAAATCTTGCCTTTTCTAATATATTGACAT-GTAAC-----TCTTTTGCGCAT 681
consensus_8488#1 TACTAGTAAAAGCATAGTGATATTGACCAGAGGATATTGTCACAAATATATNGTACACAC 682
* * * ** * * * * *
consensus_8488#0 ATACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCATGGGAGCTGTTCCT 649
consensus_8488#2 TCGTGAAAAAAAGAAA-------------------------------------------- 697
consensus_8488#1 TAGTAAAAGAAAAGAAACATATACTATCGAAATACCCTTTTACTTCTCAAAA-------- 734
** * *
consensus_8488#0 GACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTG 709
consensus_8488#2 ------------------------------------------------------------
consensus_8488#1 ------------------------------------------------------------
consensus_8488#0 AATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCAGAGTTCTTGGATTTCATTCATT 769
consensus_8488#2 ------------------------------------------------------------
consensus_8488#1 ------------------------------------------------------------
consensus_8488#0 CTTACTTTGCTCATTTTGGTGGAGCAATTTAGATTTGAGATGATTGTTTTCGGGAGCGAA 829
consensus_8488#2 ------------------------------------------------------------
consensus_8488#1 ------------------------------------------------------------
consensus_8488#0 AATTTACTAGTAAAAGCATAGTGATATTGAGCAGAGGATATTGTACAAAATATATTGTAC 889
consensus_8488#2 ------------------------------------------------------------
consensus_8488#1 ------------------------------------------------------------
consensus_8488#0 ACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCATTTTACTTCTCAGTCTAGAA 949
consensus_8488#2 ------------------------------------------------------------
consensus_8488#1 ------------------------------------------------------------
consensus_8488#0 TAATTTATTCCGAACTGGCAATTTTACTGTATGAAAAA 987
consensus_8488#2 --------------------------------------
consensus_8488#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||