These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 987 fasta sequence [TAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTGGATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGCGAACTGCCGACGACGACGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGCGGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCGTCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGAGTTCCCTCACGACGGCGACAGTGACAGCTGATCGAGGCGGCGGCG-GCGGCGGCCATGGACGGCGACGGT-CACTG-TTCGTGAAGGTGTACATGGAGGGCGTCCCCATCGGCAGGAAGCTGGACCTGCTGCCGCTAGACGGCTACAAAGGTCTCGTCGCACGGCTCGCCTCCATGTTCAGAGCATCCATCACCTATCATCATTGCCATCGACAGTTCGCCGTCGTCGGGATGAAGACGAACAAGGTTCATCATGTTCTGACATACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCA-TGGGAGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCA-GAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGAGCA-ATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTA-CTAGTAAAAGCATAGTGATATTGAG-CAGAGGATATTGTACAAAATATATTGTACACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCATTTTACTTCTCAGTCTAGAATAATTTATTCCGAACTGGCAATTTTACTGTATGAAAAA] [+] EMBL AK066518 [TAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTGGATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGCGAACTGCCGACGACGACGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGCGGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCGTCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGAGTTCCCTCACGACGGCGACAGTGACAGCTGATCGAGGCGGCGGCG GCGGCGGCCATGGACGGCGACGGT CACTG TTCGTGAAGGTGTACATGGAGGGCGTCCCCATCGGCAGGAAGCTGGACCTGCTGCCGCTAGACGGCTACAAAGGTCTCGTCGCACGGCTCGCCTCCATGTTCAGAGCATCCATCACCTATCATCATTGCCATCGACAGTTCGCCGTCGTCGGGATGAAGACGAACAAGGTTCATCATGTTCTGACATACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCA TGGGAGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCA GAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGAGCA ATTTAGATTTGAGATGATTGTTTTCGGGAGCGGAAATTTA CTAGTAAAAGCATAGTGATATTGAG CAGAGGATATTGTACAAAATATATTGTACACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCATTTTACTTCTCAGTCTAGAATAATTTATTCCGAACTGGCAATTTTACTGTATGAAAAA] [+] EMBL BI813300 [ GCGTGCGGC GCCAT GACGGCGACGTTCCACTGTTTCGTGAAGGTGTACATGGAGGGCGTCCCCATCGGCAGGAA CTGGACCTGCTGCCGCTGGACGGCTAC AAGGTCTCGTCGCACGGCTTGCCTCCATGTTCAGAGCATCCATCACCTATCATCATTGCCATCGACAGTTCGCCGTCGTCGGGATGAAGACGAACAAGGTTCATCATGTTCTGACATACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCACTGGGA CTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCA GAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGAGCACATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTA CTAGTAAAAGCATAGTGATATTGAG CAGAGGATATTGTACAAAATATATTGTACACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCCTTTTACTTCTCAaaaaaaaaa ] [+] EMBL BM419740 [ GCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCACGAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGAGCA ATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTACCTAGTAAAAGCATAGTGATATTGAGCCAGAGGATATTGTAC AAATATATTGTACACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCATTTTACTTCTC ] consensusID : consensus_8488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence [CATCGCAGGAGCTGACCTCTTCCCTGGGCCGGCTACCAAAGGTTTTCTTNCCCCGGGTNCCCCCCATTGTGCAGGACNCCCCCTCCCCTATTCATCCGTNCCATTCGACAGTTNCCCCTTCTTCGGGATGAAAGACGAACCAAGTTTCATCATGTTCTGACATTCCGAAGACCAGGAGGAGACTGGATGATGCCTGGAGACGTCCCATGGGAGTATGCCAAGCTAGCTCAGCTCTTGACCACCCTAATTTGTATATTTATTTAGACTGATTATAGTGATTAAATTGGCATGAGTTTTCCNAAACCACGAAACCCTGATATATTTGTCTTTTTTCTTCTGTTGATTGAATTCTCAAATTATATCTTTTGAACTAATTATGGGATTCNCCCTTAATGCTNGTGTGNTGTTTTTTGGATGAGGCAGGCTGGTTCCCTGACCAAGCGTGAAGAGATTGAGGATTCGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGGTTAACCACGGATGGTCAATTAATTCTTCCAGAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGACCAATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTACTAGTAAAAGCATAGTGATATTGACCAGAGGATATTGTCACAAATATATNGTACACACTAGTAAAAGAAAAGAAACATATACTATCGAAATACCCTTTTACTTCTCAAAA] [+] EMBL BM419237 [CATCGCAGGAGCTGACCTCTTCCCTGGGCCGGCTACCAAAGGTTTTCTTNCCCCGGGTNCCCCCCATTGTGCAGGACNCCCCCTCCCCTATTCATCCGTNCCATTCGACAGTTNCCCCTTCTTCGGGATGAAAGACGAACCAAGTTTCATCATGTTCTGACATTCCGAAGACCAGGAGGAGACTGGATGATGCCTGGAGACGTCCCATGGGAGTATGCCAAGCTAGCTCAGCTCTTGACCACCCTAATTTGTATATTTATTTAGACTGATTATAGTGATTAAATTGGCATGAGTTTTCCNAAACCACGAAACCCTGATATATTTGTCTTTTTTCTTCTGTTGATTGAATTCTCAAATTATATCTTTTGAACTAATTATGGGATTCNCCCTTAATGCTNGTGTGNTGTTTTTTGGATGAGGCAGGCTGGTTCCCTGACCAAGCGTGAAGAGATTGAGGATTCGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGGTTAACCACGGATGGTCAATTAATTCTTCCAGAGTTCTTGGATTTCATTCATTCTTACTTTGCTCATTTTGGTGGACCAATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTTACTAGTAAAAGCATAGTGATATTGACCAGAGGATATTGTCACAAATATATNGTACACACTAGTAAAAGAAAAGAAACATATACTATCGAAATACCCTTTTACTTCTCAAAA] consensusID : consensus_8488#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [ACCAGCTGAATAGCTGATGGCGGTGCAACCACTAAAACACCGTACCCATCTCTCTCTCTCTTTCTCTCTATAAATTTGACACAATAAAAAGAGGGGTCATCGTTGGGTGCTCCTCATTTCTCTAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTGGATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGCGAACTGCCGACGACGACGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGCGGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCGTCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGCAAGATTTCGATCTCTGATCATTCTGCACACCTACTGCTTTAATTTCAGAGAAATTTTAAGATACTTGAGAAGGTATTCGATACATAGTCGTAAGAAGTTTGCTTTCGGTCTTTTCGGTTTTCGTTTTTTTTTCCTCCCTTGTTCCCTGGCAATGGCCATTCGACCGGTTGCATCGTGTAATTGAAATCTTGCCTTTTCTAATATATTGACATGTAACTCTTTTGCGCATTCGTGAAAAAAAGAAA] [+] EMBL AK108275 [ACCAGCTGAATAGCTGATGGCGGTGCAACCACTAAAACACCGTACCCATCTCTCTCTCTCTTTCTCTCTATAAATTTGACACAATAAAAAGAGGGGTCATCGTTGGGTGCTCCTCATTTCTCTAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTGGATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGCGAACTGCCGACGACGACGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGCGGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCGTCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGCAAGATTTCGATCTCTGATCATTCTGCACACCTACTGCTTTAATTTCAGAGAAATTTTAAGATACTTGAGAAGGTATTCGATACATAGTCGTAAGAAGTTTGCTTTCGGTCTTTTCGGTTTTCGTTTTTTTTTCCTCCCTTGTTCCCTGGCAATGGCCATTCGACCGGTTGCATCGTGTAATTGAAATCTTGCCTTTTCTAATATATTGACATGTAACTCTTTTGCGCATTCGTGAAAAAAAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8488#0 ------------------------------------------------------------ consensus_8488#2 ACCAGCTGAATAGCTGATGGCGGTGCAACCACTAAAACACCGTACCCATCTCTCTCTCTC 60 consensus_8488#1 -----------------CATCGCAGGAGCTGACCTCTTCCCTGGGCCGGCTACCAAAGGT 43 consensus_8488#0 ------------------------------------------------------------ consensus_8488#2 TTTCTCTCTATAAATTTGACACAATAAAAAGAGGGGTCATCGTTGGGTGCTCCTCATTTC 120 consensus_8488#1 TTTCTTNCCCCGGGTNCCCCCCATTGTGCAGGACNCCCCCTCCCCTATTCATC-CGTNCC 102 consensus_8488#0 --TAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTG 58 consensus_8488#2 TCTAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTTCTTG 180 consensus_8488#1 ATTCGACAGTTNCCCCTTCTTCGGGATGAAAGACGAACCAAGTTTCATCAT--GTTCTGA 160 * * * * * ***** * * * * * ***** consensus_8488#0 GATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGA 118 consensus_8488#2 GATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTGAAGA 240 consensus_8488#1 CATTCCGAAGACCAGGAGGAGACTGGATGATGCCTGGAGACGTCCCATGGGAGTATGCCA 220 ** * **** * **** * * * * * * consensus_8488#0 GTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGC--GAACTGCCGACGACGACG 176 consensus_8488#2 GTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGC--GAACTGCCGACGACGACG 298 consensus_8488#1 AGCTAGCTCAGCTCTTGACCACCCTAATTTGTATATTTATTTAGACTGATTATAGTGATT 280 ** * ***** * * * ** * * **** * ** consensus_8488#0 ACGACGGCGCCGG----CGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGC 232 consensus_8488#2 ACGACGGCGCCGG----CGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGC 354 consensus_8488#1 AAATTGGCATGAGTTTTCCNAAACCACGAAACCCTGATATATTTGTCTTTTTTCTTCTGT 340 * *** * * ** ***** * * * * * * * consensus_8488#0 -GGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCG 291 consensus_8488#2 -GGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCG 413 consensus_8488#1 TGATTGAATTCTCAAATTATATC--TTTTGAACTAATTATGGGATTCNCCCTTAATGCTN 398 * * * * *** ** ** * ** ** **** * consensus_8488#0 TCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGAGTTCCCTCACGACGGCGACAG 351 consensus_8488#2 TCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGG--------CAAGATTTCGAT-- 463 consensus_8488#1 GTGTGNTGTTTTTTGGATGAGGCAGGCTGGTTCCCTGACCAAGCGTGAAGAGATTGAGGA 458 ** * ** * ** * * ** ** consensus_8488#0 TGACAGCTGATCGAG-GCGGCGGCGGCGGCGGCCATGGACGGCGACGGTCACTGTTCGTG 410 consensus_8488#2 CTCTGATCATTCTGC-ACACCTACTGCTTTAATTTCAGA-GAAATTTTAAGATACTTGAG 521 consensus_8488#1 TTCGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAA---TTGGGTTAACCACG 515 * * ** ** * * consensus_8488#0 AAGGTGTACATGGAGGGCGTCCCCATCGGCAGGAAGCTGGACCTGCTGCCGCTAGACGGC 470 consensus_8488#2 AAGGTATTCG--------ATACATAGTCGTAAGAAGTTTG-CTTTCGGTCTTT--TCGGT 570 consensus_8488#1 GA--TGGTCA--------ATTAATTCTTCCAGAGTTCTTGGATTTCATTCATTC-TTACT 564 * * * * * * * * * * * consensus_8488#0 TACAAAGGTCTCGTCGCACGGCTCGCCTCCATGTTCAGAGCATCCATCACCTATCATCAT 530 consensus_8488#2 TTT--CGTTTTTTTTTCCTCCCTTGTTCCCTGGCAATGGCCATTCGACCGGTTGCATCGT 628 consensus_8488#1 TTGCTCATTTTGGTGGACCAATTTAGATTTGAG--ATGATTGTTTTCGGGAGCGAAAATT 622 * * * * * * * * * * consensus_8488#0 TGCCATCGACAGTTCGCCGTCGTCGGGATGAAGACGA-ACAAGGTTCATCATGTTCTGAC 589 consensus_8488#2 -GTAATTGAAATCTTGCCTTTTCTAATATATTGACAT-GTAAC-----TCTTTTGCGCAT 681 consensus_8488#1 TACTAGTAAAAGCATAGTGATATTGACCAGAGGATATTGTCACAAATATATNGTACACAC 682 * * * ** * * * * * consensus_8488#0 ATACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCATGGGAGCTGTTCCT 649 consensus_8488#2 TCGTGAAAAAAAGAAA-------------------------------------------- 697 consensus_8488#1 TAGTAAAAGAAAAGAAACATATACTATCGAAATACCCTTTTACTTCTCAAAA-------- 734 ** * * consensus_8488#0 GACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTG 709 consensus_8488#2 ------------------------------------------------------------ consensus_8488#1 ------------------------------------------------------------ consensus_8488#0 AATAATTGGTTAACCAGGATGGTCAATTAATTCTTCCAGAGTTCTTGGATTTCATTCATT 769 consensus_8488#2 ------------------------------------------------------------ consensus_8488#1 ------------------------------------------------------------ consensus_8488#0 CTTACTTTGCTCATTTTGGTGGAGCAATTTAGATTTGAGATGATTGTTTTCGGGAGCGAA 829 consensus_8488#2 ------------------------------------------------------------ consensus_8488#1 ------------------------------------------------------------ consensus_8488#0 AATTTACTAGTAAAAGCATAGTGATATTGAGCAGAGGATATTGTACAAAATATATTGTAC 889 consensus_8488#2 ------------------------------------------------------------ consensus_8488#1 ------------------------------------------------------------ consensus_8488#0 ACACTAGTAAAAGAAAAGAAACATATATATAGAAATACCATTTTACTTCTCAGTCTAGAA 949 consensus_8488#2 ------------------------------------------------------------ consensus_8488#1 ------------------------------------------------------------ consensus_8488#0 TAATTTATTCCGAACTGGCAATTTTACTGTATGAAAAA 987 consensus_8488#2 -------------------------------------- consensus_8488#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||