cluster # 849

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Oryza sativa
cluster # 849 cluster # 849 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_849#0 length = 558 sequences # 1

consensus_849#1 length = 324 sequences # 1

consensusID : consensus_849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCCACCTTTTTTTTTTTTATTTAAAAAAAAGCGTTTTGCCCCCCCCCCCCTTTTACGGGGGGTTAACCTGGGGGGGGCAAAAAATCCAAACCCCCCCCTGGGGGTTTTTAAAAACCCCGTTCCCCGGAAATTCCCCCTGCCCCCAATTGGGGGATTTTTTTCCCCTTTAACCCGGGAAAAAAAAGGGCCCCCCCCCCTTCCCAAATTTTTAAAATTTTAGAAAAAAAAGGGTTTTTTTTTTTTTTCCCCCTTAACCCCATTTAAGGGCCCAGGGGCAAATTTTTTAAACCCCGGGGGACTATCCCCTTTAGGGGGGGTAAATTTTGACCTGGGGGAAAAAAGGGCCAAACCGGTTCCCGGGGGAAAAATGTTTCCCCCTCAAAATTCCCCAAAAAAAACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGGCCCCCCCCCCTTTAATGGGGGGGCCCCCCCC]

[+] EMBL CF315372             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCCACCTTTTTTTTTTTTATTTAAAAAAAAGCGTTTTGCCCCCCCCCCCCTTTTACGGGGGGTTAACCTGGGGGGGGCAAAAAATCCAAACCCCCCCCTGGGGGTTTTTAAAAACCCCGTTCCCCGGAAATTCCCCCTGCCCCCAATTGGGGGATTTTTTTCCCCTTTAACCCGGGAAAAAAAAGGGCCCCCCCCCCTTCCCAAATTTTTAAAATTTTAGAAAAAAAAGGGTTTTTTTTTTTTTTCCCCCTTAACCCCATTTAAGGGCCCAGGGGCAAATTTTTTAAACCCCGGGGGACTATCCCCTTTAGGGGGGGTAAATTTTGACCTGGGGGAAAAAAGGGCCAAACCGGTTCCCGGGGGAAAAATGTTTCCCCCTCAAAATTCCCCAAAAAAAACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGGCCCCCCCCCCTTTAATGGGGGGGCCCCCCCC]




>consensus_849#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTCCCCCCACCTTTTTTTTTTTTATTTAAAAAAAAGCGTTTT
GCCCCCCCCCCCCTTTTACGGGGGGTTAACCTGGGGGGGGCAAAAAATCCAAACCCCCCC
CTGGGGGTTTTTAAAAACCCCGTTCCCCGGAAATTCCCCCTGCCCCCAATTGGGGGATTT
TTTTCCCCTTTAACCCGGGAAAAAAAAGGGCCCCCCCCCCTTCCCAAATTTTTAAAATTT
TAGAAAAAAAAGGGTTTTTTTTTTTTTTCCCCCTTAACCCCATTTAAGGGCCCAGGGGCA
AATTTTTTAAACCCCGGGGGACTATCCCCTTTAGGGGGGGTAAATTTTGACCTGGGGGAA
AAAAGGGCCAAACCGGTTCCCGGGGGAAAAATGTTTCCCCCTCAAAATTCCCCAAAAAAA
ACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGGCCCCCCCCCCTTT
AATGGGGGGGCCCCCCCC

consensusID : consensus_849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAACCGGGCAAAAAAAAAATTTTCTCCCCCTCCCCCCCATGGAAGGGCCCAGGGGCAAATTTTTTAAACCCCGGGGGACTACCCCCTTTAGGGGGGGTAAATTTGGACCTGGGGGAAAAAAGGGGAAAAACGGTTCCCGGGGGAAAATGGTTTCCCCCCCAAAATCCCCCCAAAAAAAAAACCCGGAAACAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGACCCACCCCCCATTATTGGGGGGGCCCCCCC]

[+] EMBL CF328937             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAACCGGGCAAAAAAAAAATTTTCTCCCCCTCCCCCCCATGGAAGGGCCCAGGGGCAAATTTTTTAAACCCCGGGGGACTACCCCCTTTAGGGGGGGTAAATTTGGACCTGGGGGAAAAAAGGGGAAAAACGGTTCCCGGGGGAAAATGGTTTCCCCCCCAAAATCCCCCCAAAAAAAAAACCCGGAAACAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGACCCACCCCCCATTATTGGGGGGGCCCCCCC]




>consensus_849#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTAAAACAACCGGGCAAAAAAAAAATTTTCTCCCCCTCCCCCCCATGGAAGGGCCC
AGGGGCAAATTTTTTAAACCCCGGGGGACTACCCCCTTTAGGGGGGGTAAATTTGGACCT
GGGGGAAAAAAGGGGAAAAACGGTTCCCGGGGGAAAATGGTTTCCCCCCCAAAATCCCCC
CAAAAAAAAAACCCGGAAACAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGACCCACC
CCCCATTATTGGGGGGGCCCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_849#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTT 60
consensus_849#1      ------------------------------------------------------------
                                                                                 

consensus_849#0      TTTTTTTTTTTTTTTTTTTTCCCCCCACCTTTTTTTTTTTTATTTAAAAAAAAGCGTTTT 120
consensus_849#1      ------------------------------------------------------------
                                                                                 

consensus_849#0      GCCCCCCCCCCCCTTTTACGGGGGGTTAACCTGGGGGGGGCAAAAAATCCAAACCCCCCC 180
consensus_849#1      ------------------------------------------------------------
                                                                                 

consensus_849#0      CTGGGGGTTTTTAAAAACCCCGTTCCCCGGAAATTCCCCCTGCCCCCAATTGGGGGATTT 240
consensus_849#1      ---------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTT 27
                                                      **     *        **      ***

consensus_849#0      TTTTCCCCTTTAACCCGGGAAAAAAAAGGGCCCCCCCCCCTTCCCAAATTTTTAAAATTT 300
consensus_849#1      TTTTTTTTTTTTTTTT--------------TTTTTTTTTTTTTTTTTTTTTTTAAAACAA 73
                     ****    ***                             **      *********   

consensus_849#0      TAGAAAAAAAAGGGTTTTTTTTTTTTTTCCCCCTTAACCCCATTTAAGGGCCCAGGGGCA 360
consensus_849#1      CCGGGCAAAAAAAAAATTTTCT------CCCCCTCCCCCCCATGGAAGGGCCCAGGGGCA 127
                       *   *****     **** *      ******   ******  ***************

consensus_849#0      AATTTTTTAAACCCCGGGGGACTATCCCCTTTAGGGGGGGTAAATTTTGACCTGGGGGAA 420
consensus_849#1      AATTTTTTAAACCCCGGGGGACTACCCCCTTTAGGGGGGGTAAATTTGGACCTGGGGGAA 187
                     ************************ ********************** ************

consensus_849#0      AAAAGGGCCAAACCGGTTCCCGGGGGAAAAATGTTTCCCCCTCAAAATTCCCCAAAAAAA 480
consensus_849#1      AAAAGGGGAAAAACGGTTCCCGGGGGAAAATGGTTTCCCCCCCAAAATCCCCCCAAAAAA 247
                     *******  *** *****************  ********* ****** **** ******

consensus_849#0      ACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGGCCCCCCCCCCTTT 540
consensus_849#1      AAAACCCGGAAACAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGACCCACCCCCCATT 307
                     * ********* ************************* ******** *** ****** **

consensus_849#0      AATGGGGGGGCCCCCCCC 558
consensus_849#1      ATTGGGGGGGCCCCCCC- 324
                     * ***************