These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 500 fasta sequence [GGAAGCTCTAAGCCACCCGTGGCTCCCGTTGAAGGATTTCCGTTAAACAAAGCAAGGAATGGAANCTTTAAAGGCTTAACCTTGGAAAAAGCCTGAAACTACGCTGNTTNGGTGGCCCAGCAGACAAAGTTGCTTCCCTTGGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCAT-GCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATAAAAAATCAATAACTCATTTTGATTTAACACCTGTGTCTTCTCTGAGTGTGATTAAAAAAAAAA] [+] EMBL AU086029 [GGAAGCTCTAAGCCACCCGTGGCTCCCGTTGAAGGATTTCCGTTAAACAAAGCAAGGAATGGAANCTTTAAAGGCTTAACCTTGGAAAAAGCCTGAAACTACGCTGNTTNGGTGGCCCAGCAGACAAAGTTGCTTCCCTTGGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCAT GCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATAAAAAA ] [+] EMBL C96758 [ TTTGGTGG CCAGCAGAC AAGTTGCTTCCCTT GGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATACTTATTCAATAACTCATTTTGATTTAACACCTGTGTCTTCTCTGAGTGTGATTAAAAAAAAAA] consensusID : consensus_8497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 370 fasta sequence [TTTGGTGGCCAGCAGACAAG-TTGCTTCCCTTGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATACTTATTCAATAACTCATTTTGATTTAAAAAAAAAAAAAAAAA] [-] EMBL CA762535 [TTTGGTGGCCAGCAGACAAG TTGCTTCCCATGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCTCAAAAACAGTGTTTAAATAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTAGCCTGTAGCTTGTGTATTCCCACGCATTCTCGTTTTTCATGCGAAGGCTGGAGTCGAGTTACAGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCCTGAATGACAGGGTATTTTGCAATTGTAATACTTATTCAATAGCTCTTTTTGATTTAAAAAAAAAAAAA ] [+] EMBL BI809719 [TTTGGTGGCCA CAGACAAGTTTGCTTCCCTTGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCAC AAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGC ATTGTAATACTTATTCAATAACTCATTTTGATTTAAAAAAA ] [-] EMBL CA762534 [ TTGGTGGCCAGCAGACAAG TTGCTTCCCTTGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTTTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATACTTATTCAATAACTCATTTTGATTTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8497#0 GGAAGCTCTAAGCCACCCGTGGCTCCCGTTGAAGGATTTCCGTTAAACAAAGCAAGGAAT 60 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 GGAANCTTTAAAGGCTTAACCTTGGAAAAAGCCTGAAACTACGCTGNTTNGGTGGCCCAG 120 consensus_8497#1 -----------------------------------------------TTTGGTGGCC-AG 12 ** ******* ** consensus_8497#0 CAGACAAAGTTGCTTCCCTTGGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAAC 180 consensus_8497#1 CAGACAA-GTTGCTTCCCTTGG-ACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAAC 70 ******* ************** ************************************* consensus_8497#0 TTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTT 240 consensus_8497#1 TTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTT 130 ************************************************************ consensus_8497#0 CACATTTGAAGAAATCATG-CCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTG 299 consensus_8497#1 CACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTG 190 ******************* **************************************** consensus_8497#0 TATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGA 359 consensus_8497#1 TATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGA 250 ************************************************************ consensus_8497#0 AATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGG 419 consensus_8497#1 AATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGG 310 ************************************************************ consensus_8497#0 TATTTTGCAATTGTAATAAAAAATCAATAACTCATTTTGATTTAACACCTGTGTCTTCTC 479 consensus_8497#1 TATTTTGCAATTGTAATACTTATTCAATAACTCATTTTGATTTAAAA------------- 357 ****************** * ********************** * consensus_8497#0 TGAGTGTGATTAAAAAAAAAA 500 consensus_8497#1 --------AAAAAAAAAAAAA 370 * ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||