cluster # 8502

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Oryza sativa
cluster # 8502 cluster # 8502 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8502#0 length = 550 sequences # 3

consensus_8502#1 length = 535 sequences # 1
consensus_8502#2 length = 298 sequences # 1

consensusID : consensus_8502#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 550
fasta sequence

                              [TTTTGAAATGAGAACCTATAAAATGATTCAGTAAAGTCAGCTTAACAGTAAAAGTTTACATCAACATCCACAGGACCACAGTAGCTCCCCGTAAAAGATTAATTAAACAATAAGTACCACAGTAGAATTATAACT-GGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAA-TGCTTTAGGATCATCTTCATCCATTTCGCATTGCTCAGTTTCATCAGAGGGACCTGCCGCCAAACCAATGAGAAATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGGCATTGCATCGATTGGCTTCTTCCGGGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGGGGGGCCTCAGGCTCTGGGTCC]

[+] EMBL CB657587             [TTTTGAAATGAGAACCTATAAAATGATTCAGTAAAGTCAGCTTAACAGTAAAAGTTTACATCAACATCCACAGGACCACAGTAGCTCCCCGAAAAAGATTAATTAAACTTTAAGTACCACAGTAGAATTATAACT GGTTAGCTCAGATCAAAAAATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAAACAAGGGGACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGGAACGACGGGAGTTCATCTTCCTGTTGGTTTGGACCTGGGGCGGAAACAA TGCTTTAGGATCATCTTCATCCATTTCGCATTGCTCAGTTTCATCAGAGGGACCTGCCGCCAAACCAATGAGAAATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGGCATTGCATCGATTGGCTTCTTCCGGGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGGGGGGCCTCAGGCTCTGGGTCC]
[-] EMBL AK059476             [                                                     GTTTACATCAACATCCACAGGACCACAGTAGCTCCCAGTACAAGATTAATTAAACAATAAGTACCACAGTAGAATTATAACT GGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAA TGCTTTAGGATCATCTTCATCCATTTCGCATTGCTCAGTTTtttttt                                                                                                                                                     ]
[-] EMBL BI813061             [                                                                                           tttttttTTAATTAAACAATAAGTACCACAGTAGAATTATAACTGGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACA TGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTAACGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAAGTGCTTTAGGATCATCTTCATCCATTTCGCATGGCTCAGTTTCATCAGAGGCACCTGCCG CAGACCAATGAGAGATGAGTTTGCATCATGGGA TTGGGACCCTCATCTACTGTCATTG ATCGACTGTCT                                                                 ]




>consensus_8502#0
TTTTGAAATGAGAACCTATAAAATGATTCAGTAAAGTCAGCTTAACAGTAAAAGTTTACA
TCAACATCCACAGGACCACAGTAGCTCCCCGTAAAAGATTAATTAAACAATAAGTACCAC
AGTAGAATTATAACTGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATAT
CTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTA
CAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGA
TCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAATGCTTT
AGGATCATCTTCATCCATTTCGCATTGCTCAGTTTCATCAGAGGGACCTGCCGCCAAACC
AATGAGAAATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGGCATTGCATCGAT
TGGCTTCTTCCGGGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGGGGGGCCTCAGG
CTCTGGGTCC

consensusID : consensus_8502#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [AAAGAAATATACTGGTACTAGTAGAGTCAAGCAAAGTCANAACATACCCCCTNACTTGAAAGAACCTACCCAAAATGGNACCCTAAAATTGGTAGATTGTATTACAACATNAAACTGAAGAGACAAGGGTACCGTAAATTTACTCATCAATAAGTCCTACTTGATCTGTAACGACGGAAGTTCAATCCTCCGTGTTGGTTTGGACCTGTGGCGGGTAACAATGCTTTAGGATCATCCTCATCCATTCCGCATTGCTCAGTTTCATCAGAGCACCTGCCGCCAGACCAATGAGAGATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGTCATTGCATCGATTGTCTTCTTCCGTGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGTGGTCCTCAGGCTCTGGTTCCATTCTCCTTAATATATCATGCAGGTCGGCAAAAGCTCTCCTGTTAGTTTCATCGTTACATTCTGGAGTGTCCAGAGTGTAACGTGTATACTTTGCAGGGTTCTTAACATAGTCAGGAACC]

[-] EMBL AU063695             [AAAGAAATATACTGGTACTAGTAGAGTCAAGCAAAGTCANAACATACCCCCTNACTTGAAAGAACCTACCCAAAATGGNACCCTAAAATTGGTAGATTGTATTACAACATNAAACTGAAGAGACAAGGGTACCGTAAATTTACTCATCAATAAGTCCTACTTGATCTGTAACGACGGAAGTTCAATCCTCCGTGTTGGTTTGGACCTGTGGCGGGTAACAATGCTTTAGGATCATCCTCATCCATTCCGCATTGCTCAGTTTCATCAGAGCACCTGCCGCCAGACCAATGAGAGATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGTCATTGCATCGATTGTCTTCTTCCGTGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGTGGTCCTCAGGCTCTGGTTCCATTCTCCTTAATATATCATGCAGGTCGGCAAAAGCTCTCCTGTTAGTTTCATCGTTACATTCTGGAGTGTCCAGAGTGTAACGTGTATACTTTGCAGGGTTCTTAACATAGTCAGGAACC]




>consensus_8502#1
AAAGAAATATACTGGTACTAGTAGAGTCAAGCAAAGTCANAACATACCCCCTNACTTGAA
AGAACCTACCCAAAATGGNACCCTAAAATTGGTAGATTGTATTACAACATNAAACTGAAG
AGACAAGGGTACCGTAAATTTACTCATCAATAAGTCCTACTTGATCTGTAACGACGGAAG
TTCAATCCTCCGTGTTGGTTTGGACCTGTGGCGGGTAACAATGCTTTAGGATCATCCTCA
TCCATTCCGCATTGCTCAGTTTCATCAGAGCACCTGCCGCCAGACCAATGAGAGATGAGT
TTGCATCATTGGATTTGGGACCCTCATCTACTGTCATTGCATCGATTGTCTTCTTCCGTG
GGATGAACGTAACTGAAGTAGGTATCTCAACTGGTGGTCCTCAGGCTCTGGTTCCATTCT
CCTTAATATATCATGCAGGTCGGCAAAAGCTCTCCTGTTAGTTTCATCGTTACATTCTGG
AGTGTCCAGAGTGTAACGTGTATACTTTGCAGGGTTCTTAACATAGTCAGGAACC

consensusID : consensus_8502#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [TTTTTCCATTCCTTTTCTTTTGCGTCTTAAACAATAAGTACCACAGTAGAATTATAACTGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAATGCTTTAGGATCATCTTCAT]

[-] EMBL CA754433             [TTTTTCCATTCCTTTTCTTTTGCGTCTTAAACAATAAGTACCACAGTAGAATTATAACTGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAATGCTTTAGGATCATCTTCAT]




>consensus_8502#2
TTTTTCCATTCCTTTTCTTTTGCGTCTTAAACAATAAGTACCACAGTAGAATTATAACTG
GTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATA
GCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAG
AGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAG
TTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAATGCTTTAGGATCATCTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8502#0      TTTTGAAATGAGAACCTATAAAATGATTCAGTAAAGTCAGCTTAACAGTAAAAGTTTACA 60
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      TCAACATCCACAGGACCACAGTAGCTCCCCGTAAAAGATTAATTAAACAATAAGTACCAC 120
consensus_8502#2      ----------------TTTTTCCATTCCTTTTCTTTTGCGTCTTAAACAATAAGTACCAC 44
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      AGTAGAATTATAACTGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATAT 180
consensus_8502#2      AGTAGAATTATAACTGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATAT 104
consensus_8502#1      -AAAGAAATATA-CTGGT--------ACTAGTAGAGTCAAGCAAAGTCANA---ACATAC 47
                         **** **** *****        *  ** ***   *******   * *   ***** 

consensus_8502#0      CTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTA 240
consensus_8502#2      CTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTA 164
consensus_8502#1      CCCCTNA-CTTGAA-AGAACCTAC-CCAAAATGGNACCCTAAAATTGGTAGATTGTATTA 104
                      * *** * **** * ** * **** **** ** * * *** ***** *************

consensus_8502#0      CAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCA-TCAGTTCTACTTG 299
consensus_8502#2      CAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCA-TCAGTTCTACTTG 223
consensus_8502#1      CAACATNAAACTGAAGAGACAAGGGTACCGTAAATTT-ACTCATCAATAAGTCCTACTTG 163
                      ****** ************************ ***** ******** * *** *******

consensus_8502#0      ATCTGTAACGACGGGAGTTCA--TCTTCGTGTTGGTTTGGACCTGTGGCGG-TAACAATG 356
consensus_8502#2      ATCTGTAACGACGGGAGTTCA--TCTTCGTGTTGGTTTGGACCTGTGGCGG-TAACAATG 280
consensus_8502#1      ATCTGTAACGACGGAAGTTCAATCCTCCGTGTTGGTTTGGACCTGTGGCGGGTAACAATG 223
                      ************** ******   ** ************************ ********

consensus_8502#0      CTTTAGGATCATCTTCATCCATTTCGCATTGCTCAGTTTCATCAGAGGGACCTGCCGCCA 416
consensus_8502#2      CTTTAGGATCATCTTCAT------------------------------------------ 298
consensus_8502#1      CTTTAGGATCATCCTCATCCATTCCGCATTGCTCAGTTTCATCAGAGC-ACCTGCCGCCA 282
                      ************* ****                                          

consensus_8502#0      AACCAATGAGAAATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGGCATTGCAT 476
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      GACCAATGAGAGATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGTCATTGCAT 342
                                                                                  

consensus_8502#0      CGATTGGCTTCTTCCGGGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGGGGGGCCT 536
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      CGATTGTCTTCTTCCGTGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGTGGT-CCT 401
                                                                                  

consensus_8502#0      CAGGCTCTGGGTCC---------------------------------------------- 550
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      CAGGCTCTGGTTCCATTCTCCTTAATATATCATGCAGGTCGGCAAAAGCTCTCCTGTTAG 461
                                                                                  

consensus_8502#0      ------------------------------------------------------------
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      TTTCATCGTTACATTCTGGAGTGTCCAGAGTGTAACGTGTATACTTTGCAGGGTTCTTAA 521
                                                                                  

consensus_8502#0      --------------
consensus_8502#2      --------------
consensus_8502#1      CATAGTCAGGAACC 535