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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1564 fasta sequence
[AAGCCGCGAAGGGCAAAGAAGATGATGACTAATACCAAGCTCTTCCCTCTCGTCGCTGCCATCTGCATTTCCTTCCTGTCCGTAGCGTGCGCGTCCAACTCCACCTCGTCGCACCCCAGCTCCAGTTCTAGCCTCCTCACCAAACCGCCGCAATGGCGGGAACACCTCCTCCTTGCCGACTCGTCCTCACACGTCGGCCTCGGCCTGAACACCGTCGCCGCATGGCTACTCTCCTTCCTGGCCGCGTCCGTGTCGAGCGCCGGCGGCGTGGGGGGCGGATCGCTGTTCCTCCCCATCCTGAACCTCGTGGCGGGGCTCAGCCTCAAGCGGGCCACCGCCTACTCGTCCTTCATGGTCACCGGCGGGGCCGCCTCCAACGTGCTCTACAACCTCCTCTGCACGGGCTGCGGGCGGCGCGCCGCGGCGGTGATCGACTACGACATCGCCCTGCTCTTCCAGCCGTGCCTGCTCCTGGGCGTCAGCATCGGGGTGGTGTGCAACGTCATGTTCCCGGAGTGGCTCATCACCGCGCTCTTCGCGCTGTTCCTCGCCTTCTGCACCACCAAGACGTTGCGTGCCGGGCTCAGGATATGGAGCTCGGAGAGCCGCGGCGCCACCCTCGCAGTCGCAGCCGCCACCGCGCACGGCCGCGAGGAGCCCCTGCTGCTGCCGCACGGCACCGATGCCGGCAATGGCGGTGGTGCCCGCGGCGACGCGGGGTTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAGGGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCACCCTGTCCCAGGTTCCTTTCGCCGTGGCTTTCACAGCTTATATTATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCGGAGAGCACTAAAATGGATACCTTGCCCACGCT-TCT-ATT-CCCACTGGCTGCTTTTGT-CACCGGTGCTCTGAGCGGC-CTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCA-C-CGCAGACTGCAGCAGCGACGTCTTCGTTTA-TGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTC-GGTTGTTGGAGCGGTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATGTGCACACAGTTACACAACAAAAAAAAAAAAAAACATCGAGTGAGAGGTGCTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAACCCCTGTCTTGCCG]
[+] EMBL CB641511 [AAGCCGCGAAGGGCAAAGAAGATGATGACTAATACCAAGCTCTTCCCTCTCGTCGCTGCCATCTGCATTTCCTTCCTGTCCGTAGCGTGCGCGTCCAACTCCACCTCGTCGCACCCCAGCTCCAGTTCTAGCCTCCTCACCAAACCGCCGCAATGGCGGGAACACCTCCTCCTTGCCGACTCGTCCTCACACGTCGGCCTCGGCCTGAACACCGTCGCCGCATGGCTACTCTCCTTCCTGGCCGCGTCCGTGTCGAGCGCCGGCGGCGTGGGGGGCGGATCGCTGTTCCTCCCCATCCTGAACCTCGTGGCGGGGCTCAGCCTCAAGCGGGCCACCGCCTACTCGTCCTTCATGGTCACCGGCGGGGCCGCCTCCAACGTGCTCTACAACCTCCTCTGCACGGGCTGCGGGCGGCGCGCCGCGGCGGTGATCGACTACGACATCGCCCTGCTCTTCCAGCCGTGCCTGCTCCTGGGCGTCAGCATCGGGGTGGTGTGCAACGTCATGTTCCCGGAGTGGCTCATCACCGCGCTCTTCGCGCTGTTCCTCGCCTTCTGCACCACCAAGACGTTGCGTGCCGGGCTCAGGATATGGAGCTCGGAGAGCCGCGGCGCCACCCTCGCAGTCGCAGCCGCCACCGCGCACGGCCGCGAGGAGCCCCTGCTGCTGCCGCACGGCACCGATGCCGGCAATGGCGGTGGTGCCCGCGGCGACGCGGGGTTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTC ]
[+] EMBL AK061235 [ CACCCCAGCTCCAGTTCTAGCCTCCTCACCAAACCGCCGCAATGGCGGGAACACCTCCTCCTTGCCGACTCGTCCTCACACGTCGGCCTCGGCCTGAACACCGTCGCCGCATGGCTACTCTCCTTCCTGGCCGCGTCCGTGTCGAGCGCCGGCGGCGTGGGGGGCGGATCGCTGTTCCTCCCCATCCTGAACCTCGTGGCGGGGCTCAGCCTCAAGCGGGCCACCGCCTACTCGTCCTTCATGGTCACCGGCGGGGCCGCCTCCAACGTGCTCTACAACCTCCTCTGCACGGGCTGCGGGCGGCGCGCCGCGGCGGTGATCGACTACGACATCGCCCTGCTCTTCCAGCCGTGCCTGCTCCTGGGCGTCAGCATCGGGGTGGTGTGCAACGTCATGTTCCCGGAGTGGCTCATCACCGCGCTCTTCGCGCTGTTCCTCGCCTTCTGCACCACCAAGACGTTGCGTGCCGGGCTCAGGATATGGAGCTCGGAGAGCCGCGGCGCCACCCTCGCAGTCGCAGCCGCCACCGCGCACGGCCGCGAGGAGCCCCTGCTGCTGCCGCACGGCACCGATGCCGGCAATGGCGGTGGTGCCCGCGGCGACGCGGGGTTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTCCATGTCTTCATTGGCGATAAGCATGGAAAGGGTATGATCAGGATAAAACCCTGTGGAGTTGCATACTGGTTGATCACCCTGTCCCAGGTTCCTTTCGCCGTGGCTTTCACAGCTTATATTATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCGGAGAGCACTAAAATGGATACCTTGCCCACGCT TCT ATT CCCACTGGCTGCTTTTGT CACCGGTGCTCTGAGCGGC CTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCA C CGCAGACTGCAGCAGCGACGTCTTCGTTTA TGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTC GGTTGTTGGAGCGGTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATGTGCACACA ]
[+] EMBL BI800099 [ GCTGTCTGATTGCCCACTGGCTGCTTTTGTGCACCGGTGCTCTGAGCGGCACTCTTT GCATTGGGGGAGGCCTACTTCTGAA CCTGTTCTTCTTCAGATTGGAATACCATCACGCAGACTGCAGCAGCGACGTCTTCGTTTAGTGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCAGATTGTTGGAGC GTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATGTGCACACAGTTACACA ]
[+] EMBL CF308464 [ CGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATGTGCACACAGTTACACAACAAAAAAAAAAAAAAACATCGAGTGAGAGGTGCTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAACCCCTGTCTTGCCG]
consensusID : consensus_8506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[ATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCGGAGAGCACTAAAATGGATACCTTGCCCACGCTTCTATTCCCACTGGCTGCTTTTGTCACCGGTGCTATGAGCGGCCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGGTACAGTGGTACACACACTACAGATTCTTAAGCTACTGAAACTATGGTCCTATGGCCCTATGGTTACCAAGGTATGATCAGTAGTTTTCTGTCGAGTCCATGATTCATGCAGTAGCATTACCATCCTTGATTTGCAGACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCGGTTGTTGGAGCGGTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTCCCTTGCTGACATTGTCAGGAAGCTAAATATGTGCACACAGTTACTCATCAAAAAAAAGG]
[-] EMBL CB641512 [ATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCGGAGAGCACTAAAATGGATACCTTGCCCACGCTTCTATTCCCACTGGCTGCTTTTGTCACCGGTGCTATGAGCGGCCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCACCGCAGGTACAGTGGTACACACACTACAGATTCTTAAGCTACTGAAACTATGGTCCTATGGCCCTATGGTTACCAAGGTATGATCAGTAGTTTTCTGTCGAGTCCATGATTCATGCAGTAGCATTACCATCCTTGATTTGCAGACTGCAGCAGCGACGTCTTCGTTTATGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCGGTTGTTGGAGCGGTGGTGATTGAGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTCCCTTGCTGACATTGTCAGGAAGCTAAATATGTGCACACAGTTACTCATCAAAAAAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8506#0 AAGCCGCGAAGGGCAAAGAAGATGATGACTAATACCAAGCTCTTCCCTCTCGTCGCTGCC 60
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 ATCTGCATTTCCTTCCTGTCCGTAGCGTGCGCGTCCAACTCCACCTCGTCGCACCCCAGC 120
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 TCCAGTTCTAGCCTCCTCACCAAACCGCCGCAATGGCGGGAACACCTCCTCCTTGCCGAC 180
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 TCGTCCTCACACGTCGGCCTCGGCCTGAACACCGTCGCCGCATGGCTACTCTCCTTCCTG 240
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 GCCGCGTCCGTGTCGAGCGCCGGCGGCGTGGGGGGCGGATCGCTGTTCCTCCCCATCCTG 300
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 AACCTCGTGGCGGGGCTCAGCCTCAAGCGGGCCACCGCCTACTCGTCCTTCATGGTCACC 360
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 GGCGGGGCCGCCTCCAACGTGCTCTACAACCTCCTCTGCACGGGCTGCGGGCGGCGCGCC 420
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 GCGGCGGTGATCGACTACGACATCGCCCTGCTCTTCCAGCCGTGCCTGCTCCTGGGCGTC 480
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 AGCATCGGGGTGGTGTGCAACGTCATGTTCCCGGAGTGGCTCATCACCGCGCTCTTCGCG 540
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 CTGTTCCTCGCCTTCTGCACCACCAAGACGTTGCGTGCCGGGCTCAGGATATGGAGCTCG 600
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 GAGAGCCGCGGCGCCACCCTCGCAGTCGCAGCCGCCACCGCGCACGGCCGCGAGGAGCCC 660
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 CTGCTGCTGCCGCACGGCACCGATGCCGGCAATGGCGGTGGTGCCCGCGGCGACGCGGGG 720
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 TTCCCGTGGAAGGACGTGTCAGTGCTTGTCATGGTCTGGCTCTGCTTCTTCGTGCTCCAT 780
consensus_8506#1 -----------------------------------ATATACGCGAAGAGGAAGAAACAAG 25
* * * *
consensus_8506#0 GTCTTCATTGGCGATAAGCATGGAAAGGGTATGATCAGGATAAAACCCTGTGGAGTTGCA 840
consensus_8506#1 TTCTGCATAATCAAGAAG-ATGGCAAGGCAA--ATCCGGAGAGCACTAAAATGGATACCT 82
*** *** * * *** **** **** * *** *** * ** * * *
consensus_8506#0 TACTGGTTGATCACCCTGTCCCAGGTTCCTTT--CGCCGTGGCTTTCA-CAGCTTATATT 897
consensus_8506#1 TGCCCACGCTTCTATTCCCACTGGCTGCTTTTGTCACCGGTGCTATGAGCGGCCTCTTTG 142
* * ** * * * * *** * *** *** * * * ** * * *
consensus_8506#0 ATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAATCCG 957
consensus_8506#1 GCATTGGGGGAGGCCTACTTCTGAACCCTGTTC--TTCTTCAGATTGGAATACCA--CCG 198
** * * ** * * *** * **** * ** * * ***
consensus_8506#0 GAGAGCACTAAAATGGATACCTTGCCCACGCTTCTATTCCCACTGGCTGCTTTTGTCACC 1017
consensus_8506#1 CAG-GTACAGTGGTACACACACTACA---GATTCTTAAGCTACTGAA-ACTATGGTC-CT 252
** * ** * * ** * * * **** * **** ** * *** *
consensus_8506#0 GGTGCTCTGAGCGGCCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTT 1077
consensus_8506#1 ATGGCCCTA--TGGTTACCAAGGTATGATCAGTAGTTTTCTGTCGAGTCC-ATGATTCAT 309
** ** ** * ** ** * * * ** ** ** * *** *
consensus_8506#0 CAGATTGGAATACCACC--------GCAGACTGCAGCAGCGACGTCTTCGTTTATGGTCC 1129
consensus_8506#1 GCAGTAGCATTACCATCCTTGATTTGCAGACTGCAGCAGCGACGTCTTCGTTTATGGTCC 369
* * * ***** * ***********************************
consensus_8506#0 TTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAG 1189
consensus_8506#1 TTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATCGGAG 429
************************************************************
consensus_8506#0 AAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCGGTTGTTGGAGCGGTGGTGATTG 1249
consensus_8506#1 AAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCGGTTGTTGGAGCGGTGGTGATTG 489
************************************************************
consensus_8506#0 AGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCA 1309
consensus_8506#1 AGCGAGCTATCAGGAAGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCA 549
************************************************************
consensus_8506#0 TGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATA 1369
consensus_8506#1 TGGCGGTCAGCACCGTGATCATCACCTTCTTCGGAGCATTGGATGTATGGGCGCAGTATA 609
************************************************************
consensus_8506#0 CTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACATTGTCAGTAAGCTAAATATG 1429
consensus_8506#1 CTAGTGGAGCTTACATGGGTTTCAAGTTCCCTTGCTGACATTGTCAGGAAGCTAAATATG 669
**************************** ****************** ************
consensus_8506#0 TGCACACAGTTACACAACAAAAAAAAAAAAAAACATCGAGTGAGAGGTGCTTGCTAAAAA 1489
consensus_8506#1 TGCACACAGTTACTCATCAAAAAAAAGG-------------------------------- 697
************* ** *********
consensus_8506#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAA 1549
consensus_8506#1 ------------------------------------------------------------
consensus_8506#0 ACCCCTGTCTTGCCG 1564
consensus_8506#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||