These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1505 fasta sequence [ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGGCTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCTTCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACCGCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCCTCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCCGTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGCTCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCACCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGGAGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCGATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTTCGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGGTCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGTCAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCGTTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCATCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTATGGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCGTGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAAAAGAA] [+] EMBL BP184833 [ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCC ] [+] EMBL AU166767 [ GAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGC ] [+] EMBL AK066823 [ AGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGGCTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCTTCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACCGCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCCTCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCCGTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGCTCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCACCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGGAGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCGATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTTCGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGGTCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGT ] [+] EMBL AK071059 [ GCGCACCGCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCCTCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCCGTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGCTCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCACCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGGAGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCGATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTTCGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGGTCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGTCAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCGTTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCATCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTATGGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCGTGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAAAAGAA] consensusID : consensus_8512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGGTCGAGTGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATGGCATAAAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGCAAAATTTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGTCAGNGTNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU166768 [GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGGTCGAGTGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATGGCATAAAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGCAAAATTTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGTCAGNGTNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8512#0 ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCC 60 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 AAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGG 120 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 TTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGG 180 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 AGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATT 240 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 CTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTA 300 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 CCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAG 360 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 AGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGG 420 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 CTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCT 480 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 TCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACC 540 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 GCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCC 600 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 TCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCC 660 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 GTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGC 720 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 TCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCA 780 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 CCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGG 840 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 AGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCG 900 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 ATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTT 960 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 CGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGG 1020 consensus_8512#1 -----GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGG 55 ******* ************************************* ** ****** consensus_8512#0 TCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATG 1080 consensus_8512#1 TCGAGTGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATG 115 ************************ ********************* ************* consensus_8512#0 GCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGC 1140 consensus_8512#1 GCATAAAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGC 175 ****** ********************************* ******************* consensus_8512#0 AAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGT 1200 consensus_8512#1 AAAATTTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGT 235 ************ ********************* *********** ************* consensus_8512#0 CAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCG 1260 consensus_8512#1 CAGNGTNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 288 *** ** * ** ************ * * * * * * **** * * consensus_8512#0 TTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCA 1320 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 TCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTAT 1380 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 GGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCG 1440 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 TGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAA 1500 consensus_8512#1 ------------------------------------------------------------ consensus_8512#0 AAGAA 1505 consensus_8512#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||