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Oryza sativa
cluster # 8512 cluster # 8512       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8512#0 length = 1505 sequences # 4  
consensus_8512#1 length = 288 sequences # 1  

consensusID : consensus_8512#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1505
fasta sequence
                              [ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGGCTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCTTCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACCGCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCCTCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCCGTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGCTCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCACCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGGAGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCGATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTTCGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGGTCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGTCAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCGTTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCATCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTATGGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCGTGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAAAAGAA]

[+] EMBL BP184833             [ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU166767             [   GAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK066823             [    AGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGGCTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCTTCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACCGCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCCTCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCCGTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGCTCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCACCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGGAGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCGATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTTCGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGGTCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGT                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK071059             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCGCACCGCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCCTCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCCGTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGCTCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCACCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGGAGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCGATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTTCGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGGTCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGTCAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCGTTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCATCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTATGGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCGTGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAAAAGAA]


>consensus_8512#0 ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCC AAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGG TTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGG AGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATT CTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTA CCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAG AGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGG CTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCT TCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACC GCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCC TCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCC GTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGC TCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCA CCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGG AGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCG ATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTT CGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGG TCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATG GCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGC AAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGT CAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCG TTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCA TCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTAT GGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCG TGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAA AAGAA



consensusID : consensus_8512#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence
                              [GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGGTCGAGTGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATGGCATAAAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGCAAAATTTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGTCAGNGTNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU166768             [GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGGTCGAGTGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATGGCATAAAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGCAAAATTTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGTCAGNGTNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8512#1 GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGGTCGAG TGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATGGCATA AAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGCAAAAT TTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGTCAGNG TNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8512#0      ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCC 60
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      AAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGG 120
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      TTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGG 180
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      AGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATT 240
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      CTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTA 300
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      CCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAG 360
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      AGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGG 420
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      CTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCT 480
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      TCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACC 540
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      GCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCC 600
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      TCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCC 660
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      GTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGC 720
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      TCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCA 780
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      CCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGG 840
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      AGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCG 900
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      ATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTT 960
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      CGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGG 1020
consensus_8512#1      -----GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGG 55
                           ******* ************************************* ** ******

consensus_8512#0      TCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATG 1080
consensus_8512#1      TCGAGTGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATG 115
                      ************************ ********************* *************

consensus_8512#0      GCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGC 1140
consensus_8512#1      GCATAAAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGC 175
                      ****** ********************************* *******************

consensus_8512#0      AAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGT 1200
consensus_8512#1      AAAATTTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGT 235
                      ************ ********************* *********** *************

consensus_8512#0      CAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCG 1260
consensus_8512#1      CAGNGTNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 288
                      *** ** * ** ************ *   * *  *   *  * **** *   *       

consensus_8512#0      TTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCA 1320
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      TCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTAT 1380
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      GGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCG 1440
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      TGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAA 1500
consensus_8512#1      ------------------------------------------------------------
                                                                                  

consensus_8512#0      AAGAA 1505
consensus_8512#1      -----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)