cluster # 8513

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Oryza sativa
cluster # 8513 cluster # 8513 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8513#0 length = 1071 sequences # 3

consensus_8513#1 length = 481 sequences # 1
consensus_8513#2 length = 259 sequences # 1

consensusID : consensus_8513#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1071
fasta sequence

                              [CACCATGGCGGCCGCCGCTGACGACGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGAGGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCGGGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTTCCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAGCGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTCTGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTTGAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGGAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTGATG-CGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCAC-TTCAGTCGGGCAGAACAAGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCATGCTGAACCTAC-AAAG-ATCCCTGTCTACCTG-AACCCAGGGTCCCTTGTTC-TCATGTC-AGGCGACG-CGAGATACTTAT-GGAAACATG-AGAT-AAACCGCAA-GCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAATTTGGGCACCTAAATGGTTAGGTGTCTCTGTTAGCTTGTGATCAGATTTTTGTACTTCTGGTTAAGTTGGAAACCCCAACATCGTTTTATTTCTTCCTGCTGTTTTTGTTTTCTGCCTGTATCGAACAACCTTTATGCTTTGTTAGTAAAGCTGGCGAAAGCCTTTGATCTA]

[+] EMBL AK059959             [CACCATGGCGGCCGCCGCTGACGACGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGAGGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCGGGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTTCCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAGCGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTCTGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTTGAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGGAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTGATG CGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCAC TTCAGTCGGGCAGAACAAGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCATGCTGAACCTAC AAAG ATCCCTGTCTACCTG AACCCAGGGTCCCTTGTTC TCATGTC AGGCGACG CGAGATACTTAT GGAAACATG AGAT AAACCGCAA GCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAATTTGGGCACCTAAATGGTTAGGTGTCTCTGTTAGCTTGTGATCAGATTTTTGTACTTCTGGTTAAGTTGGAAACCCCAACATCGTTTTATTTCTTCCTGCTG                                                                      ]
[+] EMBL AU093328             [                        CGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGAGGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCGGGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTTCCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAGCGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTCTGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTTGAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGGAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATNCGAGCCATGTGAGGGCATCTGTGCTCATGTTGATCTGATGCCGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCACTTTCATTCGGGCAGAACANGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCATGCTGAACCTACAAAAGAATCCCTGTCTACCTGAAACCCAGGGTNCCTTGGTCTTCATGTCAAGGCGACGCCAAGATACTTATGGGAAACATGAAGATNAAACCGCAANGCCAAGT                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU058034             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     T AAACCGNAA NCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAATTTGGGCACCTAAATGNTTAGGTGTCTCTGTTAGCTTGTGATCAGATTTTTGTACTTCTGGTTAAGTTGGAAACCCCAACATCGTTTTATTTCTTCCTGCTGTTTTTGTTTTCTGCCTGTATCGAACAACCTTTATGCTTTGTTAGTAAAGCTGGCGAAAGCCTTTGATCTA]




>consensus_8513#0
CACCATGGCGGCCGCCGCTGACGACGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGA
GGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCG
GGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTT
CCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAG
CGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTC
TGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTT
GAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGGAGGAAACCGCT
TTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGA
TCTGATGCGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCA
CTTCAGTCGGGCAGAACAAGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCATGCTGA
ACCTACAAAGATCCCTGTCTACCTGAACCCAGGGTCCCTTGTTCTCATGTCAGGCGACGC
GAGATACTTATGGAAACATGAGATAAACCGCAAGCCAGGTGCTCAGCAATGGGGTGGCAG
GGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAA
CTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTT
TACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAAT
TTGGGCACCTAAATGGTTAGGTGTCTCTGTTAGCTTGTGATCAGATTTTTGTACTTCTGG
TTAAGTTGGAAACCCCAACATCGTTTTATTTCTTCCTGCTGTTTTTGTTTTCTGCCTGTA
TCGAACAACCTTTATGCTTTGTTAGTAAAGCTGGCGAAAGCCTTTGATCTA

consensusID : consensus_8513#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [NATGCATGTCCTTACCTTTGCTGTGGGAAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTGATGCGCTTTGATGATGGGAATCGCGATAGTCTCCCTTGAAGTCACCATGCGTGATGCACTTCAGTCGGGCAGAAACAAGAAAGTCCTATCTGTGAGACACTGGANAGTGTGCATGCTGAAACCNANNAAGATCCCTGTNTACCTGAACCANGGGTCCCCATGTTCTCATGTCAGGGCGACGCGAAGATACTTATGGGAAACATGTAGATAAACCGCAAGCCCANGTTGCTCAACCAATGGGGGTGGCAGGGGAAGCTTGAAGCANCCAGAATNTTNAACTTNNATTNCNCTGGAGGGAAGCTCCTTCCATCCACCAAACTAATACCAGCCAGAAACAGTTGTTCANGGAAATTTCTCCAGGNTTTTTTGTTCCCAAGC]

[+] EMBL AA754621             [NATGCATGTCCTTACCTTTGCTGTGGGAAGGAAACCGCTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTGATGCGCTTTGATGATGGGAATCGCGATAGTCTCCCTTGAAGTCACCATGCGTGATGCACTTCAGTCGGGCAGAAACAAGAAAGTCCTATCTGTGAGACACTGGANAGTGTGCATGCTGAAACCNANNAAGATCCCTGTNTACCTGAACCANGGGTCCCCATGTTCTCATGTCAGGGCGACGCGAAGATACTTATGGGAAACATGTAGATAAACCGCAAGCCCANGTTGCTCAACCAATGGGGGTGGCAGGGGAAGCTTGAAGCANCCAGAATNTTNAACTTNNATTNCNCTGGAGGGAAGCTCCTTCCATCCACCAAACTAATACCAGCCAGAAACAGTTGTTCANGGAAATTTCTCCAGGNTTTTTTGTTCCCAAGC]




>consensus_8513#1
NATGCATGTCCTTACCTTTGCTGTGGGAAGGAAACCGCTTTTTGACCAAATGATCGCAAA
CAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTTGATCTGATGCGCTTTGATGATGG
GAATCGCGATAGTCTCCCTTGAAGTCACCATGCGTGATGCACTTCAGTCGGGCAGAAACA
AGAAAGTCCTATCTGTGAGACACTGGANAGTGTGCATGCTGAAACCNANNAAGATCCCTG
TNTACCTGAACCANGGGTCCCCATGTTCTCATGTCAGGGCGACGCGAAGATACTTATGGG
AAACATGTAGATAAACCGCAAGCCCANGTTGCTCAACCAATGGGGGTGGCAGGGGAAGCT
TGAAGCANCCAGAATNTTNAACTTNNATTNCNCTGGAGGGAAGCTCCTTCCATCCACCAA
ACTAATACCAGCCAGAAACAGTTGTTCANGGAAATTTCTCCAGGNTTTTTTGTTCCCAAG
C

consensusID : consensus_8513#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [ACATGAGATAAACCGCAAGCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU164958             [ACATGAGATAAACCGCAAGCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8513#2
ACATGAGATAAACCGCAAGCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTTGAGCAGCA
GATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAA
CAGTTGTCAGGAAATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTT
CACCTTCTTTTTGAGATGTTGATGCTTACGAGATTATGATCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8513#0      CACCATGGCGGCCGCCGCTGACGACGACGAGCTTCGCCGGCGGGCGGCGGCGCTCCGGGA 60
consensus_8513#1      ------------------------------------------------------------
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      GGTATTCGGCGACTCATCGGACAGCGAGGCCGACGACCTTCCCGTTGGCGGGGCGGGCCG 120
consensus_8513#1      ------------------------------------------------------------
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      GGAGCAGTGGAGGTGGGAGGCGGTGGAGGGGGTGAGGGGGCTATGGCTCTGCGCCGCCTT 180
consensus_8513#1      ------------------------------------------------------------
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      CCTCTCCGCCGACGAGCAGTCGCGCCTACTCACGGCGATCCGGCGAGAAGGATGGTTCAG 240
consensus_8513#1      ------------------------------------------------------------
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      CGATGCACGCAACCAAGCAATGAGATTTGGTGATCTTCCTTCATGGGCTGTTGAGCTTTC 300
consensus_8513#1      ------------------------------------------------------------
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      TGCGCTTATCCATGAGGCTATTTGTTTTGGTGATGTCCGTGTTGGTTGTGGTTTGGAGTT 360
consensus_8513#1      ------------------------------------------------------------
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      GAAAAATGAGGACGAAGATGCATGTCCTTTACCATCAGATTTGCTGTGG--AGGAAACCG 418
consensus_8513#1      ----------------NATGCATGTCCTT-ACC------TTTGCTGTGGGAAGGAAACCG 37
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      CTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTT 478
consensus_8513#1      CTTTTTGACCAAATGATCGCAAACAGATACGAGCCAGGTGAGGGCATCTGTGCTCATGTT 97
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      GATCTGATGCGCTTTGATGATGG-AATCGCGATAGTCTCCCTTGA-GTCACCATGCGTGA 536
consensus_8513#1      GATCTGATGCGCTTTGATGATGGGAATCGCGATAGTCTCCCTTGAAGTCACCATGCGTGA 157
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      TGCACTTCAGTCGGGCAGAA-CAAGAAGTTCCTATCTGTGAGACACTGGAGAGTGTGCAT 595
consensus_8513#1      TGCACTTCAGTCGGGCAGAAACAAGAAAGTCCTATCTGTGAGACACTGGANAGTGTGCAT 217
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      GCTGAA-CCTACAAAGATCCCTGTCTACCTGAACCCAGGGTCCCT-TGTTCTCATGTCAG 653
consensus_8513#1      GCTGAAACCNANNAAGATCCCTGTNTACCTGAACCANGGGTCCCCATGTTCTCATGTCAG 277
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      G-CGACGCGA-GATACTTATGG-AAACATG-AGATAAACCGCAAGCC--AGGTGCTCAGC 707
consensus_8513#1      GGCGACGCGAAGATACTTATGGGAAACATGTAGATAAACCGCAAGCCCANGTTGCTCAAC 337
consensus_8513#2      -------------------------ACATG-AGATAAACCGCAAGCC--AGGTGCTCAGC 32
                                               ***** ****************   * ****** *

consensus_8513#0      -AATGGGG-TGGCAGGG--AGCTTGA-GCAGC---AGATAAGAACTTCAATTACACTGA- 758
consensus_8513#1      CAATGGGGGTGGCAGGGGAAGCTTGAAGCANCCAGAATNTTNAACTTNNATTNCNCTGGA 397
consensus_8513#2      -AATGGGG-TGGCAGGG--AGCTTGA-GCAGC---AGATAAGAACTTCAATTACACTGA- 83
                       ******* ********  ******* *** *   *      *****  *** * ***  

consensus_8513#0      -GGAAGCTCCTTCCATC-ACCAAACTAATACCAGC--AGAACAGTTGTC--AGGAAATTT 812
consensus_8513#1      GGGAAGCTCCTTCCATCCACCAAACTAATACCAGCCAGAAACAGTTGTTCANGGAAATTT 457
consensus_8513#2      -GGAAGCTCCTTCCATC-ACCAAACTAATACCAGC--AGAACAGTTGTC--AGGAAATTT 137
                       **************** *****************    *********    ********

consensus_8513#0      CTCCAG-TTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGA 871
consensus_8513#1      CTCCAGGNTTTTTTGTTCCCAAGC------------------------------------ 481
consensus_8513#2      CTCCAG-TTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGA 196
                      ******  *********** *  *                                    

consensus_8513#0      TGTTGATGCTTACGAGATTATGATCAAATTTGGGCACCTAAATGGTTAGGTGTCTCTGTT 931
consensus_8513#1      ------------------------------------------------------------
consensus_8513#2      TGTTGATGCTTACGAGATTATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 256
                                                                                  

consensus_8513#0      AGCTTGTGATCAGATTTTTGTACTTCTGGTTAAGTTGGAAACCCCAACATCGTTTTATTT 991
consensus_8513#1      ------------------------------------------------------------
consensus_8513#2      AAA--------------------------------------------------------- 259
                                                                                  

consensus_8513#0      CTTCCTGCTGTTTTTGTTTTCTGCCTGTATCGAACAACCTTTATGCTTTGTTAGTAAAGC 1051
consensus_8513#1      ------------------------------------------------------------
consensus_8513#2      ------------------------------------------------------------
                                                                                  

consensus_8513#0      TGGCGAAAGCCTTTGATCTA 1071
consensus_8513#1      --------------------
consensus_8513#2      --------------------