These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1389 fasta sequence [ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTCGTGATTCATTGTCATTGGATTTGTGATACCGCTAATATGATGACATTTGGAAAATCTAGCACCTATAACCTATGTGATATTCTCAACCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGCCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGAGCACTCCGAAGCTGTAGACATCTGCCTTCTTCGTCAGCTGTCCGTGCACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGGCCACTCCCATACAGATGTCCGATCTTGTGCTCCAGCTGAGGTCAGTTACTCCAGCAGCTGAACCCTGCAATGCATTGTCAAGGCTGTTGTTCTCGACGTACTCGTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGGTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCCTATCTTGTTGCCATCGTCGAAGTTGTTTGTTGCTGCTCTGATCTCTCTATAGGAGAATAGCTGGACATTTTTCAAGTTCAGAAGCTCTTTGATATCTTCTTGGGATCCACAGAAGCATCTCTTCATCAGAGCCATCTTTCAAGCTGGAGCTGTGACCTGGATTCCTGGAGCAATCCTCTCTTTCTCAGGCCAAACGGGAGCTCCAAAAGAAAGGCCAAGAATTTGTTGAAGTGAGAGGAACAGGGTTTCCAAGCGAGCATTAAATCTTCAGAGGTGTGGAACG] [+] EMBL CB658940 [ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTCGTGATTCATTGTCATTGGATTTGTGATACCGCTAATATGATGACATTTGGAAAATCTAGCACCTATAACCTATGTGATATTCTCAACCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGCCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGAGCACTCCGAAGCTGTAGACATCTGCCTTCTTCGTCAGCTGTCCGTGCACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGG ] [+] EMBL CB658969 [ ATTTGTGATAACGATAATATGATGAAATTTGGAAAATCTAGCACCTATAACCTCTGAGAGATTCTCAACCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGAGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGTTTTTTCACCACCTGCCGGATCGTCGGCCGGCTGCACGGCTTCTCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGGCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGATCACTCCGAAGCTGTAGACATCTGCCTTCTTCATCAGCTGTCCGAGCACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTG ] [-] EMBL CB658939 [ AGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGGCCACTCCCATACAGATGTCCGATCTTGTGCTCCAGCTGAGGTCAGTTACTCCAGCAGCTGAACCCTGCAATGCATTGTCAAGGCTGTTGTTCTCGACGTACTCGTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGGTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCCTATCTTGTTGCCATCGTCGAAGTTGTTTGTTGCTGCTCTGATCTCTCTATAGGAGAATAGCTGGACATTTTTCAAGTTCAGAAGCTCTTTGATATCTTCTTGGGATCCACAGAAGCATCTCTTCATCAGAGCCATCTTTCAAGCTGGAGCTGTGACCTGGATTCCTGGAGCAATCCTCTCTTTCTCAGGCCAAACGGGAGCTCCAAAAGAAAGGCCAAGAATTTGTTGAAGTGAGAGGAACAGGGTTTCCAAGCGAGCATTAAATCTTCAGAGGTGTGGAACG] [-] EMBL CB658941 [ gcCGTACTCTTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGTTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCTTATCTTGTTGCCATCGTGGAAGTTGTTTGTTGCTGCTTTGATCTTTTTATACCAGAATATCTGGACATTTTTCAAGTTCAGAAcc ] consensusID : consensus_8517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTCAAATGAGTCGATTCGTTGTTTCTCCCCATAGGTACCGCTAATATGATGACAGTTGGAAAATCCAGAACCTATGTAAGATTCCCAGAACCAGCACACATCAGTGTTCGGTACTTATGGCCGTTGCGGTCCCCGTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGTCCTGTTCGTGCAGCACCACGCCTGCCGCACGAGAAAACATGTCTGATCGAATGGTCTGGGAATCCTCCTTCCACTGATGA] [-] EMBL BI813676 [TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTCAAATGAGTCGATTCGTTGTTTCTCCCCATAGGTACCGCTAATATGATGACAGTTGGAAAATCCAGAACCTATGTAAGATTCCCAGAACCAGCACACATCAGTGTTCGGTACTTATGGCCGTTGCGGTCCCCGTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGTCCTGTTCGTGCAGCACCACGCCTGCCGCACGAGAAAACATGTCTGATCGAATGGTCTGGGAATCCTCCTTCCACTGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8517#0 --------------------------ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTC 34 consensus_8517#1 TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTC--AAATGAGTC 58 * * * * * ** ** * * ** **** consensus_8517#0 GTGATTCATTGTCATTGGATTTGTGATACCGCTAATATGATGACATTTGGAAAATCTAGC 94 consensus_8517#1 G--ATTCGTTGTTTCTCCCCATA-GGTACCGCTAATATGATGACAGTTGGAAAATCCAG- 114 * **** **** * * * ******************* ********** ** consensus_8517#0 ACCTATAACCTATGTGATATTCTCA--ACCAGCACACATCTAGTGTTCGGTAGTAGTGGT 152 consensus_8517#1 ------AACCTATGTAAGATTCCCAGAACCAGCACACATC-AGTGTTCGGTACTTATGGC 167 ********* * **** ** ************* *********** * *** consensus_8517#0 CGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGCGAGAGAGCCGGCGAGACGACCATCAC 212 consensus_8517#1 CGTTGCGGTCCCCGTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCAC 227 ************************** ********************************* consensus_8517#0 GCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAA 272 consensus_8517#1 GCCTGGGCTACCGACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAA 287 ****************************** ** ************************** consensus_8517#0 GCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCAC 332 consensus_8517#1 GCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCAC 347 ************************************************************ consensus_8517#0 CTGCCGCATCGTCGGCCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGAT 392 consensus_8517#1 CTGCCGCATCGTCGGC-GGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGAT 406 **************** ******************************************* consensus_8517#0 GAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAG 452 consensus_8517#1 GAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAG 466 ************************************************************ consensus_8517#0 CAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGCCGCACGAGAAA-CATGCCTGATCGAA 511 consensus_8517#1 CAGGCTGTCCTGTTCGTGCAGCA-CCACGCCTGCCGCACGAGAAAACATGTCTGATCGAA 525 ******* *************** ********************* **** ********* consensus_8517#0 TGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGAGCACTCCGAAGCTGTAGA 571 consensus_8517#1 TGGTCTGGGA-ATCCTCCTTCCACTGATGA------------------------------ 554 ******* ** ******************* consensus_8517#0 CATCTGCCTTCTTCGTCAGCTGTCCGTGCACGACGTATTCAGGTGCCATGTAGCCAGTTG 631 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 TCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAA 691 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 AGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTC 751 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 TGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGGCCACTCCCA 811 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 TACAGATGTCCGATCTTGTGCTCCAGCTGAGGTCAGTTACTCCAGCAGCTGAACCCTGCA 871 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 ATGCATTGTCAAGGCTGTTGTTCTCGACGTACTCGTAAATCAGGATCCTGTTTTGCCTCT 931 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 GAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGA 991 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 TTTCGGTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAA 1051 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 ATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCCTATCT 1111 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 TGTTGCCATCGTCGAAGTTGTTTGTTGCTGCTCTGATCTCTCTATAGGAGAATAGCTGGA 1171 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 CATTTTTCAAGTTCAGAAGCTCTTTGATATCTTCTTGGGATCCACAGAAGCATCTCTTCA 1231 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 TCAGAGCCATCTTTCAAGCTGGAGCTGTGACCTGGATTCCTGGAGCAATCCTCTCTTTCT 1291 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 CAGGCCAAACGGGAGCTCCAAAAGAAAGGCCAAGAATTTGTTGAAGTGAGAGGAACAGGG 1351 consensus_8517#1 ------------------------------------------------------------ consensus_8517#0 TTTCCAAGCGAGCATTAAATCTTCAGAGGTGTGGAACG 1389 consensus_8517#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||