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Oryza sativa
cluster # 8517 cluster # 8517       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8517#0 length = 1389 sequences # 4  
consensus_8517#1 length = 554 sequences # 1  

consensusID : consensus_8517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1389
fasta sequence
                              [ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTCGTGATTCATTGTCATTGGATTTGTGATACCGCTAATATGATGACATTTGGAAAATCTAGCACCTATAACCTATGTGATATTCTCAACCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGCCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGAGCACTCCGAAGCTGTAGACATCTGCCTTCTTCGTCAGCTGTCCGTGCACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGGCCACTCCCATACAGATGTCCGATCTTGTGCTCCAGCTGAGGTCAGTTACTCCAGCAGCTGAACCCTGCAATGCATTGTCAAGGCTGTTGTTCTCGACGTACTCGTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGGTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCCTATCTTGTTGCCATCGTCGAAGTTGTTTGTTGCTGCTCTGATCTCTCTATAGGAGAATAGCTGGACATTTTTCAAGTTCAGAAGCTCTTTGATATCTTCTTGGGATCCACAGAAGCATCTCTTCATCAGAGCCATCTTTCAAGCTGGAGCTGTGACCTGGATTCCTGGAGCAATCCTCTCTTTCTCAGGCCAAACGGGAGCTCCAAAAGAAAGGCCAAGAATTTGTTGAAGTGAGAGGAACAGGGTTTCCAAGCGAGCATTAAATCTTCAGAGGTGTGGAACG]

[+] EMBL CB658940             [ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTCGTGATTCATTGTCATTGGATTTGTGATACCGCTAATATGATGACATTTGGAAAATCTAGCACCTATAACCTATGTGATATTCTCAACCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGCCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGAGCACTCCGAAGCTGTAGACATCTGCCTTCTTCGTCAGCTGTCCGTGCACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB658969             [                                                    ATTTGTGATAACGATAATATGATGAAATTTGGAAAATCTAGCACCTATAACCTCTGAGAGATTCTCAACCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGAGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGTTTTTTCACCACCTGCCGGATCGTCGGCCGGCTGCACGGCTTCTCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGGCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGATCACTCCGAAGCTGTAGACATCTGCCTTCTTCATCAGCTGTCCGAGCACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB658939             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGGCCACTCCCATACAGATGTCCGATCTTGTGCTCCAGCTGAGGTCAGTTACTCCAGCAGCTGAACCCTGCAATGCATTGTCAAGGCTGTTGTTCTCGACGTACTCGTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGGTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCCTATCTTGTTGCCATCGTCGAAGTTGTTTGTTGCTGCTCTGATCTCTCTATAGGAGAATAGCTGGACATTTTTCAAGTTCAGAAGCTCTTTGATATCTTCTTGGGATCCACAGAAGCATCTCTTCATCAGAGCCATCTTTCAAGCTGGAGCTGTGACCTGGATTCCTGGAGCAATCCTCTCTTTCTCAGGCCAAACGGGAGCTCCAAAAGAAAGGCCAAGAATTTGTTGAAGTGAGAGGAACAGGGTTTCCAAGCGAGCATTAAATCTTCAGAGGTGTGGAACG]
[-] EMBL CB658941             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                gcCGTACTCTTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGTTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCTTATCTTGTTGCCATCGTGGAAGTTGTTTGTTGCTGCTTTGATCTTTTTATACCAGAATATCTGGACATTTTTCAAGTTCAGAAcc                                                                                                                                                                                                      ]


>consensus_8517#0 ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTCGTGATTCATTGTCATTGGATTTGTGA TACCGCTAATATGATGACATTTGGAAAATCTAGCACCTATAACCTATGTGATATTCTCAA CCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACC TTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCC GCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCC AAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCCGGCTGCACGGC TTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAA CCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCAC GCCTGCCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATG ATCTCAAGAATGAGCACTCCGAAGCTGTAGACATCTGCCTTCTTCGTCAGCTGTCCGTGC ACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTA ACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTG TCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCG TGAAGATAGCTCAGTCCCTTGGCCACTCCCATACAGATGTCCGATCTTGTGCTCCAGCTG AGGTCAGTTACTCCAGCAGCTGAACCCTGCAATGCATTGTCAAGGCTGTTGTTCTCGACG TACTCGTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGG TTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGGTCAGGAATTCGTTGATCCCTTGT TCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTG TACACAGTTCCAAATCCACCTCGGCCTATCTTGTTGCCATCGTCGAAGTTGTTTGTTGCT GCTCTGATCTCTCTATAGGAGAATAGCTGGACATTTTTCAAGTTCAGAAGCTCTTTGATA TCTTCTTGGGATCCACAGAAGCATCTCTTCATCAGAGCCATCTTTCAAGCTGGAGCTGTG ACCTGGATTCCTGGAGCAATCCTCTCTTTCTCAGGCCAAACGGGAGCTCCAAAAGAAAGG CCAAGAATTTGTTGAAGTGAGAGGAACAGGGTTTCCAAGCGAGCATTAAATCTTCAGAGG TGTGGAACG



consensusID : consensus_8517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence
                              [TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTCAAATGAGTCGATTCGTTGTTTCTCCCCATAGGTACCGCTAATATGATGACAGTTGGAAAATCCAGAACCTATGTAAGATTCCCAGAACCAGCACACATCAGTGTTCGGTACTTATGGCCGTTGCGGTCCCCGTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGTCCTGTTCGTGCAGCACCACGCCTGCCGCACGAGAAAACATGTCTGATCGAATGGTCTGGGAATCCTCCTTCCACTGATGA]

[-] EMBL BI813676             [TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTCAAATGAGTCGATTCGTTGTTTCTCCCCATAGGTACCGCTAATATGATGACAGTTGGAAAATCCAGAACCTATGTAAGATTCCCAGAACCAGCACACATCAGTGTTCGGTACTTATGGCCGTTGCGGTCCCCGTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGTCCTGTTCGTGCAGCACCACGCCTGCCGCACGAGAAAACATGTCTGATCGAATGGTCTGGGAATCCTCCTTCCACTGATGA]


>consensus_8517#1 TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTCAAATGAGTCGA TTCGTTGTTTCTCCCCATAGGTACCGCTAATATGATGACAGTTGGAAAATCCAGAACCTA TGTAAGATTCCCAGAACCAGCACACATCAGTGTTCGGTACTTATGGCCGTTGCGGTCCCC GTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCG ACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGC ATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTC GGCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCT CCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGTCCTGTT CGTGCAGCACCACGCCTGCCGCACGAGAAAACATGTCTGATCGAATGGTCTGGGAATCCT CCTTCCACTGATGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8517#0      --------------------------ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTC 34
consensus_8517#1      TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTC--AAATGAGTC 58
                                                 *   * * *  * ** **  *   * ** ****

consensus_8517#0      GTGATTCATTGTCATTGGATTTGTGATACCGCTAATATGATGACATTTGGAAAATCTAGC 94
consensus_8517#1      G--ATTCGTTGTTTCTCCCCATA-GGTACCGCTAATATGATGACAGTTGGAAAATCCAG- 114
                      *  **** ****   *     *  * ******************* ********** ** 

consensus_8517#0      ACCTATAACCTATGTGATATTCTCA--ACCAGCACACATCTAGTGTTCGGTAGTAGTGGT 152
consensus_8517#1      ------AACCTATGTAAGATTCCCAGAACCAGCACACATC-AGTGTTCGGTACTTATGGC 167
                            ********* * **** **  ************* *********** *  *** 

consensus_8517#0      CGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGCGAGAGAGCCGGCGAGACGACCATCAC 212
consensus_8517#1      CGTTGCGGTCCCCGTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCAC 227
                      ************************** *********************************

consensus_8517#0      GCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAA 272
consensus_8517#1      GCCTGGGCTACCGACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAA 287
                      ****************************** ** **************************

consensus_8517#0      GCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCAC 332
consensus_8517#1      GCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCAC 347
                      ************************************************************

consensus_8517#0      CTGCCGCATCGTCGGCCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGAT 392
consensus_8517#1      CTGCCGCATCGTCGGC-GGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGAT 406
                      **************** *******************************************

consensus_8517#0      GAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAG 452
consensus_8517#1      GAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAG 466
                      ************************************************************

consensus_8517#0      CAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGCCGCACGAGAAA-CATGCCTGATCGAA 511
consensus_8517#1      CAGGCTGTCCTGTTCGTGCAGCA-CCACGCCTGCCGCACGAGAAAACATGTCTGATCGAA 525
                      ******* *************** ********************* **** *********

consensus_8517#0      TGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGAGCACTCCGAAGCTGTAGA 571
consensus_8517#1      TGGTCTGGGA-ATCCTCCTTCCACTGATGA------------------------------ 554
                      ******* ** *******************                              

consensus_8517#0      CATCTGCCTTCTTCGTCAGCTGTCCGTGCACGACGTATTCAGGTGCCATGTAGCCAGTTG 631
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      TCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAA 691
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      AGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTC 751
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      TGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGGCCACTCCCA 811
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      TACAGATGTCCGATCTTGTGCTCCAGCTGAGGTCAGTTACTCCAGCAGCTGAACCCTGCA 871
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      ATGCATTGTCAAGGCTGTTGTTCTCGACGTACTCGTAAATCAGGATCCTGTTTTGCCTCT 931
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      GAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGA 991
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      TTTCGGTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAA 1051
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      ATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCCTATCT 1111
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      TGTTGCCATCGTCGAAGTTGTTTGTTGCTGCTCTGATCTCTCTATAGGAGAATAGCTGGA 1171
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      CATTTTTCAAGTTCAGAAGCTCTTTGATATCTTCTTGGGATCCACAGAAGCATCTCTTCA 1231
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      TCAGAGCCATCTTTCAAGCTGGAGCTGTGACCTGGATTCCTGGAGCAATCCTCTCTTTCT 1291
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      CAGGCCAAACGGGAGCTCCAAAAGAAAGGCCAAGAATTTGTTGAAGTGAGAGGAACAGGG 1351
consensus_8517#1      ------------------------------------------------------------
                                                                                  

consensus_8517#0      TTTCCAAGCGAGCATTAAATCTTCAGAGGTGTGGAACG 1389
consensus_8517#1      --------------------------------------
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)