cluster # 8519

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Oryza sativa
cluster # 8519 cluster # 8519 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8519#0 length = 473 sequences # 4

consensus_8519#1 length = 324 sequences # 1

consensusID : consensus_8519#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 473
fasta sequence

                              [GTTCCAGGCGCCCGCCGGNTATTACNGCGTGGCACCTGCCGCCGTNGGCGCCCTACGACCACCA-GGGATGGTACTACGGCAACCGGCAGCC-GTACTACCACCAGCAGCAATGCTA-CGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTT-TTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATCTGATAAATGACAATGAGAACCATAATATACTAGTAGTAAGCAGTACAAAAAAA]

[+] EMBL BI805896             [GTTCCAGGCGCCCGCCGGNTATTACNGCGTGGCACCTGCCGCCGTNGGCGCCCTACGACCACCATGGGATGNTA TACGGCAACCGGCATCCTGTANTACCACCAGCAGCAATGCTATCGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTTCCCTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATCTGATAAATGACAATGCGAACCATAATAaaaa                      ]
[+] EMBL AU166808             [                              GGCACC GCCGCCGGCGGCGCCCTACGACCACCA GGGATGGTACTACGGCAACCGGCAGCC GTACTACCACCAGCAGCAATGCTA CGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTT TTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATCTGATAAATGACAATGAGAACCATAATATACTAGTAGTAAGCAGTACAAAAAA ]
[+] EMBL AU222549             [                                                  CCCTACGACCACCA GGGATGGTANTACGGCAACCGGCAGCC GTACTACCACCAGCAGCAATGCTA CGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTT TTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATCTGATAAATGACAATGAGAACCATAATATACTAGTAGTAAGCAGTACAAAAAAA]
[+] EMBL CF312787             [                                                                                                                    A CGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTT TTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCT                                                                ]




>consensus_8519#0
GTTCCAGGCGCCCGCCGGNTATTACNGCGTGGCACCTGCCGCCGTNGGCGCCCTACGACC
ACCAGGGATGGTACTACGGCAACCGGCAGCCGTACTACCACCAGCAGCAATGCTACGAGG
ACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATG
GACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTC
ATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTT
CTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGT
GAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATC
TGATAAATGACAATGAGAACCATAATATACTAGTAGTAAGCAGTACAAAAAAA

consensusID : consensus_8519#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [GGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGNCGACGGGNGCAATCAGTGCGTGTGATCACTNTCGCTCACACTCACTCATCACTAGCTCATGGCCNGTGGTNAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTNTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU181172             [GGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGNCGACGGGNGCAATCAGTGCGTGTGATCACTNTCGCTCACACTCACTCATCACTAGCTCATGGCCNGTGGTNAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTNTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8519#1
GGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGNCGACGGGNGCAAT
CAGTGCGTGTGATCACTNTCGCTCACACTCACTCATCACTAGCTCATGGCCNGTGGTNAA
AAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTTCTTCTTGTTTATTAT
GCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGT
GATGTTCTTGGTGTCTAGTTGGATCTTNTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8519#0      GTTCCAGGCGCCCGCCGGNTATTACNGCGTGGCACCTGCCGCCGTNGGCGCCCTACGACC 60
consensus_8519#1      ------------------------------------------------------------
                                                                                  

consensus_8519#0      ACCAGGGATGGTACTACGGCAACCGGCAGCCGTACTACCACCAGCAGCAATGCTACGAGG 120
consensus_8519#1      ------------------------------------------------------------
                                                                                  

consensus_8519#0      ACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATG 180
consensus_8519#1      ---------------GGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATG 45
                                     *********************************************

consensus_8519#0      GACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTC 240
consensus_8519#1      GNCGACGGGNGCAATCAGTGCGTGTGATCACTNTCGCTCACACTCACTCATCACTAGCTC 105
                      * ******* ********************** ***************************

consensus_8519#0      ATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTT 300
consensus_8519#1      ATGGCCNGTGGTNAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTT 165
                      ****** ***** ***********************************************

consensus_8519#0      CTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGT 360
consensus_8519#1      CTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGT 225
                      ************************************************************

consensus_8519#0      GAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATC 420
consensus_8519#1      GAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTNTTCCCTTTTAAAAAAAA 285
                      ****************************************** ********   *  *  

consensus_8519#0      TGATAAATGACAATGAGAACCATAATATACTAGTAGTAAGCAGTACAAAAAAA 473
consensus_8519#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 324
                        * ***  * **  * **  * ** * *  *  *  **