These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 719 fasta sequence [ACCANCTGATCCCACANCAATGGAGTTTTGTTGCCCGNTCCATTCTCAAATACA-CCTCCTTACCTTCGNTCTTTGGGCCTCTTAGTNCTGGCACACNCGGAGCTGTCCCACTGTCTTCTACGAGAAAGTTTCTGGTCCTAATCCATGGGGGTTACAATAACCNTTTTCATCCCTGAATCCATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGAT-GGAGACCCTAAGTGCATTCTTG-CAT-GCTCTGAGGCTCCACTGGGTGGAGTTCCAGAACAAGTTTTACGAGGGTGATGGATACAAGTTTGTACCC-TTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC-TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATGGCTGTGACACGAGAAAAGTGTCTTTTGAATTACACTTGTGGAAATAAATAAGTTCCATT] [+] EMBL AU030375 [ACCANCTGATCCCACANCAATGGAGTTTTGTTGCCCGNTCCATTCTCAAATACA CCTCCTTACCTTCGNTCTTTGGGCCTCTTAGTNCTGGCACACNCGGAGCTGTCCCACTGTCTTCTACGAGAAAGTTTCTGGTCCTAATCCATGGGGGTTACAATAACCNTTTTCATCCCTGAATCCATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGGAGCCCCTAAGTGCATTCTTGCCATGGCTCTGAGGCTCCACTGGGTGGAGTTCCAGAANAAGTTTTACGAGGGTGATGGATACAAGTTTGTACCCTTTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATGGCTGTGACACGAAAAAA ] [+] EMBL AK058856 [ gtgCAGTCTCAAATACAGCCT CTTACCTTCG TCTTTGGG CTCTTAGT CTTGCACACTCGGAGCTGT CCACTGTCTTCTACGAGAAAG TTCTTGTTCT AT CATGGGGG TACAATAA CATTTTCAT CCTG AT CATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGAT GGAGACCCTAAGTGCATTCTTG CAT GCTCTGAGGCTCCACTGGGTGGAGTTCCAGAACAAGTTTTACGAGGGTGATGGATACAAGTTTGTACCC TTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATGGCTGTGACACGAGTGATGTGTCTTTTGAATTACACTTGTGGAAATAAATAAGTTCCATT] [+] EMBL AA754354 [ cgagGAT GGAGACCCTAAGTRCATTCTTG CAT GCTCTGAGGCTCCACTGGGTGGAGTTCCAGAACAAGTTTTACGAGGGTGATGGATACAAGTTTGTACCC TTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAMCCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTCTTTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGAYCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAAT AAAGTTCTGTACTCATGGCTGTGACACGAG ] [+] EMBL AK060235 [ TATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCA ] consensusID : consensus_8520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [CCCTCACCACCATGAGGAGTTTGAATTCAGTGAAGTCTTTGTTCACCAGCTGATCCACACAATTGAGTTTGTGCTCGGTGCAGTCTCAAATACAGCCTCTTACCTTCGTCTTTGGGCTCTTAGTCTTGCACACTCGGAGCTGTCCACTGTCTTCTACGAGAAAGTTCTTGTTCTATCATGGGGGTACAATAACATTTTCATCCTGATCATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGAGACCCTAAGTGCATTCTTGCATGCTCTGAGGCTNCACTGGGTGGAGTTCCAGAACAAGTTTTACGNGGGGTNATGGGTACAAGTTTGTAC] [+] EMBL OSSS28139 [CCCTCACCACCATGAGGAGTTTGAATTCAGTGAAGTCTTTGTTCACCAGCTGATCCACACAATTGAGTTTGTGCTCGGTGCAGTCTCAAATACAGCCTCTTACCTTCGTCTTTGGGCTCTTAGTCTTGCACACTCGGAGCTGTCCACTGTCTTCTACGAGAAAGTTCTTGTTCTATCATGGGGGTACAATAACATTTTCATCCTGATCATTGGAGCAGTGATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGAGACCCTAAGTGCATTCTTGCATGCTCTGAGGCTNCACTGGGTGGAGTTCCAGAACAAGTTTTACGNGGGGTNATGGGTACAAGTTTGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8520#0 --------------------------------------------ACCANCTGATCCCACA 16 consensus_8520#1 CCCTCACCACCATGAGGAGTTTGAATTCAGTGAAGTCTTTGTTCACCAGCTGATCC-ACA 59 **** ******* *** consensus_8520#0 NCAATGGAGTTTTGTTGCCCGNTCCATTCTCAAATACACCTCCTTACCTTCGNTCTTTGG 76 consensus_8520#1 C-AATTGAGTTT--GTGCTCGGTGCAGTCTCAAATACAGCCTCTTACCTTCGT-CTTTGG 115 *** ****** *** ** * ** *********** * ********** ****** consensus_8520#0 GCCTCTTAGTNCTGGCACACNCGGAGCTGTCCCACTGTCTTCTACGAGAAAGTTTCTGGT 136 consensus_8520#1 GC-TCTTAGTCTTG-CACACTCGGAGCTGTCC-ACTGTCTTCTACGAGAAAGTTCTTG-T 171 ** ******* ** ***** *********** ********************* ** * consensus_8520#0 CCTAATCCATGGGGGTTACAATAACCNTTTTCATCCCTGAATCCATTGGAGCAGTGATCT 196 consensus_8520#1 TCTA--TCATGGGGGT-ACAATAAC-ATTTTCATCC-TGA--TCATTGGAGCAGTGATCT 224 *** ********* ******** ********* *** ***************** consensus_8520#0 TTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGAGACCCTAAGTGCATTCTTGCATG 256 consensus_8520#1 TTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGAGACCCTAAGTGCATTCTTGCATG 284 ************************************************************ consensus_8520#0 CTCTGAGGCTCCACTGGGTGGAGTTCCAGAACAAGTTTTACGAGGG-TGATGGATACAAG 315 consensus_8520#1 CTCTGAGGCTNCACTGGGTGGAGTTCCAGAACAAGTTTTACGNGGGGTNATGGGTACAAG 344 ********** ******************************* *** * **** ****** consensus_8520#0 TTTGTACCCTTTGCTTTCGCATCAATCATCGAGGAGGAAGATTGAATCTGAATTGTTGTA 375 consensus_8520#1 TTTGTAC----------------------------------------------------- 351 ******* consensus_8520#0 TGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATCACCA 435 consensus_8520#1 ------------------------------------------------------------ consensus_8520#0 TTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTC 495 consensus_8520#1 ------------------------------------------------------------ consensus_8520#0 TTTTTTGCCTACACGATTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACT 555 consensus_8520#1 ------------------------------------------------------------ consensus_8520#0 TTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCAAATAAGTCTAGTGCATAGCATAAC 615 consensus_8520#1 ------------------------------------------------------------ consensus_8520#0 TGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATGGCTGTGACACGAGAA 675 consensus_8520#1 ------------------------------------------------------------ consensus_8520#0 AAGTGTCTTTTGAATTACACTTGTGGAAATAAATAAGTTCCATT 719 consensus_8520#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||