These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1130 fasta sequence [CAGGGAGGAGACCGACGCGCCGCGCCGCGCCGGCGACTTCGCCCTGCGCCCGCGCACGCCCGCCCGTCGCCCCGTCGCCCGTCGCCCGTCGCCGCGTCGCGCTTTGCCACCGTCCCCTGTCCCAGTCGCGCGGTCGCCGCTTCGCTGCTTCGGCCCCTCCACGCGCCAGCGCCGGCGGCCCGCTCTAGGTGTCTCGGCGCCTCCAGTCCATGCGCCAGCGCCAGCGC-CAGCGGCGCCTTTCCGGAGCTCCAGACGAAGCCCGAGGGACGAAGTAAATTTCTGCCATGGAAACAACTCAGAAAGCTGATCCAGTGGAACCAGCAGCTAAGATTGTTCGACAAACCTCACAGTTCAAACGGTGGGGACGGAAACATCCATTTGTTCGATATGGGCTGCCACTTATCTCTTTGACAGTGTTTGGTGCAGTAGGACTCGCTCATCTTATACAGGGCAGCAAAGAAGTAACAAAGGAAAAGGAGGACATGGAATGGGAGGTTGTAGAAACAACAAAAGCCCTGAGCCGAACAGGACCGGTGGAAGGAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTG-AAGGCTTTGCAGCAAAAGGTGGACATAAACAACTATGACTACAAGAGGATTCCCAGACCCAATGAG-AAAT-AATTGANGTAAAGCATCATTTACCACCCTGANAAAGCAAAGTANAAAGTCTCATCATTTTTTTCCTTCGTGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCCAGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTGTAACGACGGCACTAGGCATGATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGACATGTGAACTACAGCTCTGTTGTATGTTATTCTTCTTCAAAGAGAATTTGAATCCCCNCTTCATGTATATATATACTCAGCTATTGTTCTAGAAATATCTTCGACAACAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BF430560 [CAGGGAGGAGACCGACGCGCCGCGCCGCGCCGGCGACTTCGCCCTGCGCCCGCGCACGCCCGCCCGTCGCCCCGTCGCCCGTCGCCCGTCGCCGCGTCGCGCTTTGCCACCGTCCCCTGTCCCAGTCGCGCGGTCGCCGCTTCGCTGCTTCGGCCCCTCCACGCGCCAGCGCCGGCGGCCCGCTCTAGGTGTCTCGGCGCCTCCAGTCCATGCGCCAGCGCCAGCGC CAGCGGCGCCTTTCCGGAGCTCCAGACGAAGCCCGAGGGACGAAGTAAATTTCTGCCATGGAAACAACTCAGAAAGCTGATCCAGTGGAACCAGCAGCTAAGATTGTTCGACAAACCTCACAGTTCAAACGGTGGGGACGGAAACATCCATTTGTTCGATATGGGCTGCCACTTATCTCTTTGACAGTGTTTGGTGCAGTAGGACTCGCTCATCTTATACAGGGCAGCAAAGAAGTAACAAAGGAAAAGGAGGACATGGAATGGGAGGTTGTAGAAACAACAAAAGCCCTGAGCCGAACAGGACCGGTGGAAGGAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTG AAGGCTTTGCAGCAAAAGGTGGACATAAACAACTATGACTACAAGAGGATTCCCAGACCCAATGAG ATAT AATTG ] [+] EMBL AU032368 [ CTAGGTGTCTCGGCGCCTCCAGTCCATGCGCCA CGCCAG GCNCAG GANTNGTATCCGGAGCTCCAGACGAAGCCCGAGGGACGAA TAAATTTCTGCCATGGAAACAACTCAGAAAGCTGATCCAGTGGAACCAGCAGCTAAGATTGTTCGACAAACCTCACAGTTCAAACGGTGGGGACGGAAACATCCATTTGTTCGATATGGGCTGCCACTTATCTCTTTGACAGTGTTTGGTGCAGTAGGACTCGCTCATCTTATACAGGGCAGCAAAGAAGTAACAAAGGAAAAGGAGGACATGGAATGGGAGGTTGTAGAAACAACAAAAGCCCTGAGCCGAACAGGACCGGTGGAAGGAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTGAAAGGCTTTGCAGCAAAAGGTGGACATAAACAACTATGACTACAAGAGGATTCCCAGACCCAATGAGAAAATAAATTGANGTAAAGCATCATTTACCACCCTGANAAAGCAAAGTANAAAGTCTCATCATTTTTTTCCTTCGTGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTG ] [+] EMBL AU093185 [ TTGTAGAACCACCAAAAGCCTTGACCCGAACAGGACCGGTGAAAGGAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTG AAGGCTTTGCAGCAAAAGGTGGACATAACCAACTATGNCTNCAAGAGGATTCCCAGACCCAATGAG AAAT AATTGAAGTAAAGCATCATTTACCACCCTGA GAAGCAAAGTA AAAGTCTCATCA TTTTTTCCTTCGTGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCCAGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTGTAACGACGGCACTAGGCATGATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGACATGTGAACTACAGCTCTGTTGTATGTTATTCTTCTTCAAAGAGAATTTGAATCCCCNCTTCATGTATATATATACTCAGCTATTGTTCTAGAAATATCTTCGACAACAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [TAAANAACTATGACTACAAGAGGATTCCCAGACCCATGAGAATAANTGAAGTAAAGCATCATTTACCACCCTGAGAAGCAAAGTAAAAGTCTCATCATTTTTTCCTTCGTNACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCCAGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTNTAACGACGGCACTAGGNATGATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGAAAAAAAAAAAAA] [+] EMBL AU032369 [TAAANAACTATGACTACAAGAGGATTCCCAGACCCATGAGAATAANTGAAGTAAAGCATCATTTACCACCCTGAGAAGCAAAGTAAAAGTCTCATCATTTTTTCCTTCGTNACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCCAGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTNTAACGACGGCACTAGGNATGATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGAAAAAAAAAAAAA] consensusID : consensus_8527#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [NTCCAGCAATGTAAACCGGCAACAACCNCCNGTANTANCCANGAAGAACTCTATGNTCTTTCTGCCACCATTGTAGAGAATTNNGGTGATGAANCTTGAACTGTACGAATCAGCGNTTGTAACGACGGCACTAGGCNTGATAAACTTGGCTGTAGCTTTGTATGTCTACTCNTGTGNGATTTTTTTGGTGTTGGNATACTGCCCCNGGAATGGGTGAATNAATTGCAAGACTACTCTTGACNTGTGNACTACAGCTCTGTTGTATGTTATTCTTCTTCAAAGAGNATTTGAATCCCCAAAAA] [+] EMBL AU161510 [NTCCAGCAATGTAAACCGGCAACAACCNCCNGTANTANCCANGAAGAACTCTATGNTCTTTCTGCCACCATTGTAGAGAATTNNGGTGATGAANCTTGAACTGTACGAATCAGCGNTTGTAACGACGGCACTAGGCNTGATAAACTTGGCTGTAGCTTTGTATGTCTACTCNTGTGNGATTTTTTTGGTGTTGGNATACTGCCCCNGGAATGGGTGAATNAATTGCAAGACTACTCTTGACNTGTGNACTACAGCTCTGTTGTATGTTATTCTTCTTCAAAGAGNATTTGAATCCCCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8527#0 CAGGGAGGAGACCGACGCGCCGCGCCGCGCCGGCGACTTCGCCCTGCGCCCGCGCACGCC 60 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 CGCCCGTCGCCCCGTCGCCCGTCGCCCGTCGCCGCGTCGCGCTTTGCCACCGTCCCCTGT 120 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 CCCAGTCGCGCGGTCGCCGCTTCGCTGCTTCGGCCCCTCCACGCGCCAGCGCCGGCGGCC 180 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 CGCTCTAGGTGTCTCGGCGCCTCCAGTCCATGCGCCAGCGCCAGCGCCAGCGGCGCCTTT 240 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 CCGGAGCTCCAGACGAAGCCCGAGGGACGAAGTAAATTTCTGCCATGGAAACAACTCAGA 300 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 AAGCTGATCCAGTGGAACCAGCAGCTAAGATTGTTCGACAAACCTCACAGTTCAAACGGT 360 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 GGGGACGGAAACATCCATTTGTTCGATATGGGCTGCCACTTATCTCTTTGACAGTGTTTG 420 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 GTGCAGTAGGACTCGCTCATCTTATACAGGGCAGCAAAGAAGTAACAAAGGAAAAGGAGG 480 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 ACATGGAATGGGAGGTTGTAGAAACAACAAAAGCCCTGAGCCGAACAGGACCGGTGGAAG 540 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 GAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTGAAGGCTTTGCAGCAAAAGG 600 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 TGGACATAAACAACTATGACTACAAGAGGATTCCCAGACCCAATGAGAAATAATTGANGT 660 consensus_8527#1 ------TAAANAACTATGACTACAAGAGGATTCCCAGACCCA-TGAGAA-TAANTGAAGT 52 consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 AAAGCATCATTTACCACCCTGANAAAGCAAAGTANAAAGTCTCATCATTTTTTTCCTTCG 720 consensus_8527#1 AAAGCATCATTTACCACCCTGAGAA-GCAAAGTAAAA-GTCTCATCATTTTTT-CCTTCG 109 consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 TGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAG-CCG 779 consensus_8527#1 TNACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAG-CCG 168 consensus_8527#2 ------------------------------------------NTCCAGCAATGTAAACCG 18 ******* **** *** consensus_8527#0 GCAACAACCTCCAGTATTATC--ATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAG 837 consensus_8527#1 GCAACAACCTCCAGTATTATC--ATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAG 226 consensus_8527#2 GCAACAACCNCCNGTANTANCCANGAAGAACTCTATGNTCTTTCTGCCACCATTGTAGAG 78 ********* ** *** ** * *********** ********************** consensus_8527#0 AATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTGTAACGACGGCACTAGGCAT 897 consensus_8527#1 AATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTNTAACGACGGCACTAGGNAT 286 consensus_8527#2 AATTNNGGTGATGAANCTTGAACTGTACGAATCAGCGNTTGTAACGACGGCACTAGGCNT 138 **** ******** ********************* ** **************** * consensus_8527#0 GATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATA 957 consensus_8527#1 GATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATA 346 consensus_8527#2 GATAAACTTGGCTGTAGCTTTGTATGTCTACTCNTGTGNGATTTTTTTGGTGTTGGNATA 198 ********************************* **** ***************** *** consensus_8527#0 CTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGACATGTGAACTACAGCTCT 1017 consensus_8527#1 CTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGAAAAAAAAAAAAA------ 400 consensus_8527#2 CTGCCCCNGGAATGGGTGAATNAATTGCAAGACTACTCTTGACNTGTGNACTACAGCTCT 258 ******* ************* ******************** * * consensus_8527#0 GTTGTATGTTATTCTTCTTCAAAGAGAATTTGAATCCCCNCTTCATGTATATATATACTC 1077 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 GTTGTATGTTATTCTTCTTCAAAGAGNATTTGAATCCCCAAAAA---------------- 302 consensus_8527#0 AGCTATTGTTCTAGAAATATCTTCGACAACAAAAAAAAAAAAAAAAAAAAAAA 1130 consensus_8527#1 ----------------------------------------------------- consensus_8527#2 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||