These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1458 fasta sequence [CGGCGCCGGCGCCGCTTCGCGGTTGTCCGCGGCGGTGTTTGCGCTCCGCTCCTACTCCTCCACGGCCCAGTCCTCGTCGCCGCGTCGGTTCCCGACGCCTAAGGAGATCCGCAGGGGCCTGGACGAGTTCGTTGTCGGCCAGGACAAGGCCAAGAAGGTGCTCTGTGTTGCCGTGCACAATCACTACAAGAGGATATACAGTGAATCTTCAAATTGTTCTATGAAGAGCTCGGCATGTGGCGATGTTAGTATGAGTGGTGATGATGACATTGAGCTTGAAAAAAGTAACATCCTTCTGATTGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTAGCTCGATTTGCCGATGTTCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCAGGTGAAGATGTGGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACAGAGCGCGGGATTGTTTACATCGACGAAGTTGATAAACTCATAAAGAAGGTTGAATGCAATGAGGACAGGAGGGATGTCTCTGGAGAGGGTGTCCAGCATGCTTTGTTAAAAATATTTG-AAGGAACAGTCATCAATGTACCAAGAAAAAGAAATCAAGATAGTATATCCGATGGTTATGTCGAGGTTAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGTATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTATTGAAAGTGATGACCTGATTGCATACGGCCTCATACCAGAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGGGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTCTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTCTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTTTTACACAATAAAGCATAGCATTAAGCTT] [+] EMBL CF307122 [CGGCGCCGGCGCCGCTTCGCGGTTGTCCGCGGCGGTGTTTGCGCTCCGCTCCTACTCCTCCACGGCCCAGTCCTCGTCGCCGCGTCGGTTCCCGACGCCTAAGGAGATCCGCAGGGGCCTGGACGAGTTCGTTGTCGGCCAGGACAAGGCCAAGAAGGTGCTCTGTGTTGCCGTGCACAATCACTACAAGAGGATATACAGTGAATCTTCAAATTGTTCTATGAAGAGCTCGGCATGTGGCGATGTTAGTATGAGTGGTGATGATGACATTGAGCTTGAAAAAAGTAACATCCTTCTGATTGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTAGCTCGATTTGCCGATGTTCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCAGGTGAAGATGTGGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACA ] [+] EMBL AK106477 [ GCGGTGTTTGCGCTCCGCTCCTACTCCTCCACGGCCCAGTCCTCGTCGCCGCGTCGGTTCCCGACGCCTAAGGAGATCCGCAGGGGCCTGGACGAGTTCGTCGTCGGCCAGGACAAGGCCAAGAAGGTGCTCTGTGTTGCCGTGCACAATCACTACAAGAGGATATACAGTGAATCTTCAAATTGTTCTATGAAGAGCTCGGCATGTGGCGATGTTAGTATGAGTGGTGATGATGACATTGAGCTTGAAAAAAGTAACATCCTTCTGATTGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTAGCTCGATTTGCCGATGTTCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCAGGTGAAGATGTGGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACAGAGCGCGGGATTGTTTACATCGACGAAGTTGATAAACTCATAAAGAAGGTTGAATGCAATGAGGACAGGAGGGATGTCTCTGGAGAGGGTGTCCAGCATGCTTTGTTAAAAATATTTG AAGGAACAGTCATCAATGTACCAAGAAAAAGAAATCAAGATAGTATATCCGATGGTTATGTCGAGGTTAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGTATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTATTGAAAGTGATGACCTGATTGCATACGGCCTCATACCAGAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGGGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTCTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTCTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTTTTACACAATAAAGCATAGCATTAAGCTT] [+] EMBL AA754072 [ ACATCCTTCTGATTGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTACCTCGATTTGCCGATGTTCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCACGTGAAGATGTGGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACACAGCGCGGGATTGTTTACATCCACCAACTTCATAAACTCCTAAACAACGTTCAATGCAATCACGACACGAAGGATCTCTCTGGAGAGGGTGTCCAGCATGCTTTGTTAAAAATATTTGAAACGAACAGTCATCCATGTTCCCACAAAAACNAATCcccaat ] [-] EMBL CB654909 [ TTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTATTGAAAGTGATGACCTGATTGCATACGGCCTCATACCAGAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATCCAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGAGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTTTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTTTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTTTTACCCAATAAAGCATAGCATTAAG ] consensusID : consensus_8528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [TCAGNATAGTATATCCGATGGTTATGTCGAGGTTAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGTATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGAGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTCTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTCTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTGTTACACAATAAAGCATAGCATTAAGCTTTAT] [-] EMBL CB680218 [TCAGNATAGTATATCCGATGGTTATGTCGAGGTTAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGTATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGAGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTCTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTCTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTGTTACACAATAAAGCATAGCATTAAGCTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8528#0 CGGCGCCGGCGCCGCTTCGCGGTTGTCCGCGGCGGTGTTTGCGCTCCGCTCCTACTCCTC 60 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 CACGGCCCAGTCCTCGTCGCCGCGTCGGTTCCCGACGCCTAAGGAGATCCGCAGGGGCCT 120 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 GGACGAGTTCGTTGTCGGCCAGGACAAGGCCAAGAAGGTGCTCTGTGTTGCCGTGCACAA 180 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 TCACTACAAGAGGATATACAGTGAATCTTCAAATTGTTCTATGAAGAGCTCGGCATGTGG 240 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 CGATGTTAGTATGAGTGGTGATGATGACATTGAGCTTGAAAAAAGTAACATCCTTCTGAT 300 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 TGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTAGCTCGATTTGCCGATGT 360 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 TCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCAGGTGAAGATGT 420 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 GGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACAGAGCG 480 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 CGGGATTGTTTACATCGACGAAGTTGATAAACTCATAAAGAAGGTTGAATGCAATGAGGA 540 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 CAGGAGGGATGTCTCTGGAGAGGGTGTCCAGCATGCTTTGTTAAAAATATTTGAAGGAAC 600 consensus_8528#1 ------------------------------------------------------------ consensus_8528#0 AGTCATCAATGTACCAAGAAAAAGAAATCAAGATAGTATATCCGATGGTTATGTCGAGGT 660 consensus_8528#1 ---------------------------TCAGNATAGTATATCCGATGGTTATGTCGAGGT 33 *** **************************** consensus_8528#0 TAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGT 720 consensus_8528#1 TAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGT 93 ************************************************************ consensus_8528#0 ATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCG 780 consensus_8528#1 ATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCG 153 ************************************************************ consensus_8528#0 AAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTATTGAAAGTGA 840 consensus_8528#1 AAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTA---------- 203 ************************************************** consensus_8528#0 TGACCTGATTGCATACGGCCTCATACCAGAATTTATTGGGAGGTTGCCAATAACAGTTGG 900 consensus_8528#1 ------------------------------ATTTATTGGGAGGTTGCCAATAACAGTTGG 233 ****************************** consensus_8528#0 CTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAAT 960 consensus_8528#1 CTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAAT 293 ************************************************************ consensus_8528#0 AGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAA 1020 consensus_8528#1 AGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAA 353 ************************************************************ consensus_8528#0 TGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAG 1080 consensus_8528#1 TGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAG 413 ************************************************************ consensus_8528#0 ATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGGGGG 1140 consensus_8528#1 ATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGAGGG 473 ******************************************************** *** consensus_8528#0 AAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCG 1200 consensus_8528#1 AAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCG 533 ************************************************************ consensus_8528#0 AGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAA 1260 consensus_8528#1 AGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAA 593 ************************************************************ consensus_8528#0 TAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTT 1320 consensus_8528#1 TAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTT 653 ************************************************************ consensus_8528#0 CTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTT 1380 consensus_8528#1 CTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTT 713 ************************************************************ consensus_8528#0 CTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTTTTACACAATA 1440 consensus_8528#1 CTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTGTTACACAATA 773 ************************************************* ********** consensus_8528#0 AAGCATAGCATTAAGCTT--- 1458 consensus_8528#1 AAGCATAGCATTAAGCTTTAT 794 ****************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||