|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1458 fasta sequence
[CGGCGCCGGCGCCGCTTCGCGGTTGTCCGCGGCGGTGTTTGCGCTCCGCTCCTACTCCTCCACGGCCCAGTCCTCGTCGCCGCGTCGGTTCCCGACGCCTAAGGAGATCCGCAGGGGCCTGGACGAGTTCGTTGTCGGCCAGGACAAGGCCAAGAAGGTGCTCTGTGTTGCCGTGCACAATCACTACAAGAGGATATACAGTGAATCTTCAAATTGTTCTATGAAGAGCTCGGCATGTGGCGATGTTAGTATGAGTGGTGATGATGACATTGAGCTTGAAAAAAGTAACATCCTTCTGATTGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTAGCTCGATTTGCCGATGTTCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCAGGTGAAGATGTGGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACAGAGCGCGGGATTGTTTACATCGACGAAGTTGATAAACTCATAAAGAAGGTTGAATGCAATGAGGACAGGAGGGATGTCTCTGGAGAGGGTGTCCAGCATGCTTTGTTAAAAATATTTG-AAGGAACAGTCATCAATGTACCAAGAAAAAGAAATCAAGATAGTATATCCGATGGTTATGTCGAGGTTAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGTATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTATTGAAAGTGATGACCTGATTGCATACGGCCTCATACCAGAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGGGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTCTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTCTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTTTTACACAATAAAGCATAGCATTAAGCTT]
[+] EMBL CF307122 [CGGCGCCGGCGCCGCTTCGCGGTTGTCCGCGGCGGTGTTTGCGCTCCGCTCCTACTCCTCCACGGCCCAGTCCTCGTCGCCGCGTCGGTTCCCGACGCCTAAGGAGATCCGCAGGGGCCTGGACGAGTTCGTTGTCGGCCAGGACAAGGCCAAGAAGGTGCTCTGTGTTGCCGTGCACAATCACTACAAGAGGATATACAGTGAATCTTCAAATTGTTCTATGAAGAGCTCGGCATGTGGCGATGTTAGTATGAGTGGTGATGATGACATTGAGCTTGAAAAAAGTAACATCCTTCTGATTGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTAGCTCGATTTGCCGATGTTCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCAGGTGAAGATGTGGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACA ]
[+] EMBL AK106477 [ GCGGTGTTTGCGCTCCGCTCCTACTCCTCCACGGCCCAGTCCTCGTCGCCGCGTCGGTTCCCGACGCCTAAGGAGATCCGCAGGGGCCTGGACGAGTTCGTCGTCGGCCAGGACAAGGCCAAGAAGGTGCTCTGTGTTGCCGTGCACAATCACTACAAGAGGATATACAGTGAATCTTCAAATTGTTCTATGAAGAGCTCGGCATGTGGCGATGTTAGTATGAGTGGTGATGATGACATTGAGCTTGAAAAAAGTAACATCCTTCTGATTGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTAGCTCGATTTGCCGATGTTCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCAGGTGAAGATGTGGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACAGAGCGCGGGATTGTTTACATCGACGAAGTTGATAAACTCATAAAGAAGGTTGAATGCAATGAGGACAGGAGGGATGTCTCTGGAGAGGGTGTCCAGCATGCTTTGTTAAAAATATTTG AAGGAACAGTCATCAATGTACCAAGAAAAAGAAATCAAGATAGTATATCCGATGGTTATGTCGAGGTTAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGTATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTATTGAAAGTGATGACCTGATTGCATACGGCCTCATACCAGAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGGGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTCTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTCTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTTTTACACAATAAAGCATAGCATTAAGCTT]
[+] EMBL AA754072 [ ACATCCTTCTGATTGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTACCTCGATTTGCCGATGTTCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCACGTGAAGATGTGGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACACAGCGCGGGATTGTTTACATCCACCAACTTCATAAACTCCTAAACAACGTTCAATGCAATCACGACACGAAGGATCTCTCTGGAGAGGGTGTCCAGCATGCTTTGTTAAAAATATTTGAAACGAACAGTCATCCATGTTCCCACAAAAACNAATCcccaat ]
[-] EMBL CB654909 [ TTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTATTGAAAGTGATGACCTGATTGCATACGGCCTCATACCAGAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATCCAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGAGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTTTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTTTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTTTTACCCAATAAAGCATAGCATTAAG ]
consensusID : consensus_8528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence
[TCAGNATAGTATATCCGATGGTTATGTCGAGGTTAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGTATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGAGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTCTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTCTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTGTTACACAATAAAGCATAGCATTAAGCTTTAT]
[-] EMBL CB680218 [TCAGNATAGTATATCCGATGGTTATGTCGAGGTTAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGTATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCGAAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTAATTTATTGGGAGGTTGCCAATAACAGTTGGCTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAATAGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAATGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAGATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGAGGGAAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCGAGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAATAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTTCTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTTCTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTGTTACACAATAAAGCATAGCATTAAGCTTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8528#0 CGGCGCCGGCGCCGCTTCGCGGTTGTCCGCGGCGGTGTTTGCGCTCCGCTCCTACTCCTC 60
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 CACGGCCCAGTCCTCGTCGCCGCGTCGGTTCCCGACGCCTAAGGAGATCCGCAGGGGCCT 120
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 GGACGAGTTCGTTGTCGGCCAGGACAAGGCCAAGAAGGTGCTCTGTGTTGCCGTGCACAA 180
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 TCACTACAAGAGGATATACAGTGAATCTTCAAATTGTTCTATGAAGAGCTCGGCATGTGG 240
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 CGATGTTAGTATGAGTGGTGATGATGACATTGAGCTTGAAAAAAGTAACATCCTTCTGAT 300
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 TGGGCCGACAGGGTCAGGTAAAACACTGTTAGCAAAAACTTTAGCTCGATTTGCCGATGT 360
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 TCCATTTGTGATTGCTGATGCAACTGCAATTACACAGGCTGGGTATTCAGGTGAAGATGT 420
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 GGAATCTATAATCTGCAATCTTCTGGCGGCTGCTAAGTTCAATGTGGAAGCCACAGAGCG 480
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 CGGGATTGTTTACATCGACGAAGTTGATAAACTCATAAAGAAGGTTGAATGCAATGAGGA 540
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 CAGGAGGGATGTCTCTGGAGAGGGTGTCCAGCATGCTTTGTTAAAAATATTTGAAGGAAC 600
consensus_8528#1 ------------------------------------------------------------
consensus_8528#0 AGTCATCAATGTACCAAGAAAAAGAAATCAAGATAGTATATCCGATGGTTATGTCGAGGT 660
consensus_8528#1 ---------------------------TCAGNATAGTATATCCGATGGTTATGTCGAGGT 33
*** ****************************
consensus_8528#0 TAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGT 720
consensus_8528#1 TAATACCAAGAATATACTCTTCATCTGTGGAGGTTCCTTCTCTGGCTTGGAAAAGATAGT 93
************************************************************
consensus_8528#0 ATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCG 780
consensus_8528#1 ATCAGAAAGACACCGAAACTGTCATATGGGGTTTGGACTTCCAACATCTGGTGATCTGCG 153
************************************************************
consensus_8528#0 AAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTATTGAAAGTGA 840
consensus_8528#1 AAACTGTGGTTGGACAAATGCTATCGGGGAATCATGCTGTGTTGAAGCTA---------- 203
**************************************************
consensus_8528#0 TGACCTGATTGCATACGGCCTCATACCAGAATTTATTGGGAGGTTGCCAATAACAGTTGG 900
consensus_8528#1 ------------------------------ATTTATTGGGAGGTTGCCAATAACAGTTGG 233
******************************
consensus_8528#0 CTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAAT 960
consensus_8528#1 CTTGAATGATCTCAGTGAAGCTCAATTGGTTCAGGTTCTCATGGAGCCAAAAAATGCAAT 293
************************************************************
consensus_8528#0 AGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAA 1020
consensus_8528#1 AGGAAAACAATACAAGAAGTTGTTTAAAATGAATGATGTCAAGCTGCATTTTACTGAAAA 353
************************************************************
consensus_8528#0 TGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAG 1080
consensus_8528#1 TGCTTTGCGGTTAATAGCAAAGAAAGCAGCTTCACGAGAAACAGGGGCTCGAGAACTGAG 413
************************************************************
consensus_8528#0 ATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGGGGG 1140
consensus_8528#1 ATCTATAATGGAAGATATTTTGACAGAAGCAATGTTTGAGATTCCTGATGCAAGAGAGGG 473
******************************************************** ***
consensus_8528#0 AAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCG 1200
consensus_8528#1 AAAAGAGAAGATAATTGCTGTTCTTGTTGATGAAGAGTCTGTAGGGTCAGTGCATTCTCG 533
************************************************************
consensus_8528#0 AGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAA 1260
consensus_8528#1 AGGATGTGGAGCCAAGATTTTCCGGGATGATGGAGCCTTAGAACTATATGTTTACCAGAA 593
************************************************************
consensus_8528#0 TAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTT 1320
consensus_8528#1 TAATATTAGACTGCCAGGGTTAATCCCTGGGAACCCTAAACGTACTCGCATTGTCAGCTT 653
************************************************************
consensus_8528#0 CTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTT 1380
consensus_8528#1 CTGCCTTTTGGTCGCTTTGTCAGCAACTAAGCTGTGGGTTTACCATACATTTCACTGCTT 713
************************************************************
consensus_8528#0 CTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTTTTACACAATA 1440
consensus_8528#1 CTCCTCGATATACGAATGGGTTGTGTCGATACTATGTAAAGCCAACATTGTTACACAATA 773
************************************************* **********
consensus_8528#0 AAGCATAGCATTAAGCTT--- 1458
consensus_8528#1 AAGCATAGCATTAAGCTTTAT 794
******************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||