These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1396 fasta sequence [TTTTTTGGAACGAAATAAGTACGTGCAACTCTTGTGATGAAGGGAGTACCACGGATGATTACCTATTTGTAGCACAAGAAGGGCATGGAAGACCATAGGCTATATGGGCCATCACAGTGCACGCTCGGACGTCCATCACTGGTCGGATGG-CCTCG-GGCAGTCGGGCTCAAAAGG-AGAGCACTTAAA-CACTACTCAGAAACATTAGTAATA-ATTTATGAAACCAAG-CACTATAATACATGC---AACACTAACTAGACAATAATCATTGTGATAAAGTTAGAAACTAGGTCTCTCGACGTTAAACAGGTTCACAAGATAGTGATATGGGGATCAATTCAACACAGGATGGCCTCTTGTCTTCTTATTTTAGCTGCAAGTTTACGTTGGACCAGATCCTCAGGAAGAGTCCAATACGGCATAGGAACCGGCCATCTATCAGGGTGAACACTATCATCTCCAGCAATCTTCCAATCAAGCACATCAGATGGATTACCATGGCTATGTTCAGCAACAGCCCCTTTTGTCTTAAAATACTTCAGGATCTCGCGAATCTCACACCATGATAGGAATGCGGTGCCTTCTACACCCTCATCGTAGAAGTTCATGCCAACAAAGGTT-CCATCGAAACAAAGAAGAGGCCCTCCAATGCCAGCCTTAGTGGTTGTACATCCAGAGTAACTAAGAAATTTGCAGTCATGTGTGACAACAGTGGGAAATTGTTGCCCTCTTGCAGCCATTAATCTGCCAGATTCGAAGATACGCCCTACAGCTAGTAATTTCCGACAGTTATGCCCATAAGGTTGAATTTTCACTGGTTGGCGAACACAGTGATCCTTCACACTGACTAGAGCAACATTGTAATGTAAATTATAATGTTGTACTGTCCCTACGGTGCGCAGATTATTTGGAAGCAACACTTCAATCCTCAAGTTTTCAGCAATCCTGTTTTCATCACTAGAATCCTTAAGTAAGTTCGCTGAAGTCAGAATAGTGGCACACTCGTTCCATTCAATAAAGAAACCCGTGCATGCAAAAGTTCGTTTATCTCCGTTGAATGAAGCAAGTGCGACAGTATTTTCGCATATGCTAGAGGCAACATCTTCACTTAGTTCACTCCAGACACCTTTACCAAATATGTCACCAAAAGGCTCTTCAAAAGTATAGGCCAAAATCATGCCATCTTTCGATTTTGGGGGCTCAGGATAGCCCAAGGATTCTAGATCCCCGTATCGATCCTTGTTAAGAACATCTCTATGTACTTGATGAGAGCTAGGCATCTCACCGCTGGGACTTTCTCCAACCCAGACTTCCTTCAAAGCCTCTAACCGCGCAGCAAATCTGACCTCATGATCGAGTATACAATTCACAAGCGGTCAAGAACTCTATCCCCTGGCACAAA] [-] EMBL BI813720 [TTTTTTGGAACGAAATAAGTACGTGCAACTCTTGTGATGAAGGGAGTACCACGGATGATTACCTATTTGTAGCACAAGAAGGGCATGGAAGACCATAGGCTATATGGGCCATCACAGTGCACGCTCGGACGTCCATCACTGGTCGGATGG CCTCGTGGCAGTCGGGCTCAAAAGG AGAGCACTTAAACCACTACTCAGAAACATTAGTAATACATTTATGAAACCAAGCCACTATAATACATGCCAGACCACTAACTAGACAAT ] [+] EMBL CA999042 [ TGAAACGAAATAAGTACGTGCAACTCTTGTGATGAAGGGAGTACAAAGGATGATTACATATTTGTAGCACAAGAAGGGCATGGAAGACCATAGGCTATATGGCCCATCACAGTGCACGCTCGGACGTCCATCACTGGTCGGATGGCCCTCG GGCAGTCGGGCTCAAAAGGCAGAGCACTTAAA CACTACTCAGAAACATTAGTAATA ATTTATGAAACCAAG CACTATAATACATGC AACACTAACTAGACAATAATCATTGTGATAAAGTTAGAAACTAGGTCTCTCGACGTTAAACAGGTTCACAAGATAGTGATATGGGGATCAATTCAACACAGGATGGCCTCTTGTCTTCTTATTTTAGCTGCAAGTTTACGTTGGACCAGATCCTCAGGAAGAGTCCAATACGGCATAGGAACCGGCCATCTATCAGGGTGAACACTATCATCTCCAGCAATCTTCCAATCAAGCACATCAGATGGATTACCATGGCTATGTTCAGCAACAGCCCCTTTTGTCTTAAAATACTTCAGGATCTCGCGAATCTCACACCATGATAGGAATGCGGTGCCTTCTAC ] [+] EMBL CB631988 [ AAA CACTACTCAGAAACATTAGTAATA ATTTATGAAACCAAG CACTATAATACATGC AACACTAACTAGACAATAATCATTGTGATAAAGTTAGAAACTAGGTCTCTCGACGTTAAACAGGTTCACAAGATAGTGATATGGGGATCAATTCAACACAGGATGGCCTCTTGTCTTCTTATTTTAGCTGCAAGTTTACGTTGGACCAGATCCTCAGGAAGAGTCCAATACGGCATAGGAACCGGCCATCTATCAGGGTGAACACTATCATCTCCAGCAATCTTCCAATCAAGCACATCAGATGGATTACCATGGCTATGTTCAGCAACAGCCCCTTTTGTCTTAAAATACTTCAGGATCTCGCGAATCTCACACCATGATAGGAATGCGGTGCCTTCTACACCCTCATCGTAGAAGTTCATGCCAACAAAGGTT CCATCGAAACAAAGAAGAGGCCCTCCAATGCCAGCCTTAGTGGTTGTACATCCAGAGTAACTAAGAAATTTGCAGTCATGTGTGACAACAGTGGGAAATTGTTGCCCTCTTGCAGCCATTAATCTGCCAGATTCGAAGATACGCCCTACAGCTAGTAATTTCCGACAGTTATGCCCATAAGGTTGAATTTTCACTGGTTGGCGAACACAGTGATCCTTCACACTGACTAGAGCAACATTGTAATGTAAATTATAATGTTGTACTGTCCCTACGGTGCGCAGATTATTTGGAAGCAACACTTCAATCCTCAAGTTTTCAGCAATCCTGTTTTCATCACTAGAATCCTTAAGTAAGTTCGCTGAAGTCAGAATAGTGGCACACTCGTTCCATTCAATAAAGAAACCCGTGCATG ] [-] EMBL CA765184 [ AAGNTTCCCATCGAANCAAAGAAGAGGCCCTCCAATGCCAGCCTTAGTGGTTGTACATCCAGAGTANCTAAGAAATTTGCAGTCATGTGTGACANCAGTGGGAAATTGTTGCCCTCTTGCAGCCATTAATCTGCCAGATTCGAAGATACGCCCTACAGCTAGTAATTTCCGACAGTTATGCCCATAAGGTTGAATTTTCACTGGTTGGCGAACACAGTGATCCTTCACACTGACTAGAGCAACATTGTAATGTAAATTATAATGTTGTACTGTCCCTACGGTGCGCAGATTATTTGGAAGCAACACTTCAATCCTCAAGTTTTCAGCAATCCTGTTTTCATCACTAGAATCCTTAAGTAAGTTCGCTGAAGTCAGAATAGTGGCACACTCGTTCCATTCAATAAAGAAACCCGTGCATGCAAAAGTTCGTTTATCTCCGTTGAATGAAGCAAGTGCGACAGTATTTTCGCATATGCTAGAGGCAACATCTTCACTTAGTTCACTCCAGACACCTTTACCAAATATGTCACCAAAAGGCTCTTCAAAAGTATAGGCCAAAATCATGCCATCTTTCGATTTTGGGGGCTCAGGATAGCCCAAGGATTCTAGATCCCCGTATCGATCCTTGTTAAGAACATCTCTATGTACTTGATGAGAGCTAGGCATCTCACCGCTGGGACTTTCTCCAACCCAGACTTCCTTCAAAGCCTCTAACCGCGCAGCAAATCTGACCTCATGATCGAGTATACAATTCACAAGCGGTCAAGAACTCTATCCCCTGGCACAAA] consensusID : consensus_8529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TCNNTANCNANTCTTGTTTTTTANTNTCTAAAACTGANACNAAATANGTACGTGCAAATCTTGTGATGAANGGAGTACAAAGGATGATTAGATNTTTGTAGCTAAGAANGGCATGGAACACCAATNGCTATATGGCCCATCACACTGACACGCTCGGACGTCCATCACTGGTCGGATGGCCCNCGGGCANTCGGGCTCCTAATGCANAACACTTGCACACTGGGNGCAAACNTTCCTNCTCTTGATNAANCCAANCACTATNTTACATGCAAGCCNTNNTACACNATTTCTTCGTNATCAATTAGAAACTATCTCGTTCCCAATTCCAGCACCCTNGGGGATCAANTATTTCTAAAACNGGNGGCGGTCGCGGGTNGAAACNCCNCCTGNGGTTCCCTTTANTGAANGGTTGAATTCCCAACNAGGGGTTAACCCCGGGCCCTNNCCGTTTCCCNNTNTTAAATTGTTTNCCCCCCAAATCCCCANNAAATTCAAACCANAACCGGNTTTTNCCCNGGGGTCCAAAGATTTAAANACCCAAAANTGGGGTTNCCCCCCNCCCTCCAAGGGGAANTTTTGGGCCCTTTAANG] [-] EMBL AA753972 [TCNNTANCNANTCTTGTTTTTTANTNTCTAAAACTGANACNAAATANGTACGTGCAAATCTTGTGATGAANGGAGTACAAAGGATGATTAGATNTTTGTAGCTAAGAANGGCATGGAACACCAATNGCTATATGGCCCATCACACTGACACGCTCGGACGTCCATCACTGGTCGGATGGCCCNCGGGCANTCGGGCTCCTAATGCANAACACTTGCACACTGGGNGCAAACNTTCCTNCTCTTGATNAANCCAANCACTATNTTACATGCAAGCCNTNNTACACNATTTCTTCGTNATCAATTAGAAACTATCTCGTTCCCAATTCCAGCACCCTNGGGGATCAANTATTTCTAAAACNGGNGGCGGTCGCGGGTNGAAACNCCNCCTGNGGTTCCCTTTANTGAANGGTTGAATTCCCAACNAGGGGTTAACCCCGGGCCCTNNCCGTTTCCCNNTNTTAAATTGTTTNCCCCCCAAATCCCCANNAAATTCAAACCANAACCGGNTTTTNCCCNGGGGTCCAAAGATTTAAANACCCAAAANTGGGGTTNCCCCCCNCCCTCCAAGGGGAANTTTTGGGCCCTTTAANG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8529#0 ------------------------TTTTT-----TGGAACGAAATAAGTACGTGCAACTC 31 consensus_8529#1 TCNNTANCNANTCTTGTTTTTTANTNTCTAAAACTGANACNAAATANGTACGTGCAAATC 60 * * * ** ** ***** ********** ** consensus_8529#0 TTGTGATGAAGGGAGTACCACGGATGATTACCTATTTGTAGCACAAGAAGGGCATGGAAG 91 consensus_8529#1 TTGTGATGAANGGAGTACAAAGGATGATTAGATNTTTGTAGC-TAAGAANGGCATGGAAC 119 ********** ******* * ********* * ******** ***** ********* consensus_8529#0 ACCATAGGCTATATGGGCCATCACAGTG-CACGCTCGGACGTCCATCACTGGTCGGATGG 150 consensus_8529#1 ACCAATNGCTATATGGCCCATCACACTGACACGCTCGGACGTCCATCACTGGTCGGATGG 179 **** ********* ******** ** ******************************* consensus_8529#0 CC-TCGGGCAGTCGGGCTCAAAAGG-AGAGCACTTAAACACTACTCAGAAACATTAGTAA 208 consensus_8529#1 CCCNCGGGCANTCGGGCTCCTAATGCANAACACTTGCACACTGGGNGCAAACNTTCCTNC 239 ** ****** ******** ** * * * ***** ***** **** ** * consensus_8529#0 TAATTTATGAAACCAAGCACTATAATACATGCAACACTAACTAGACAATAATCATTGTGA 268 consensus_8529#1 TC-TTGATNAANCCAANCACTATNTTACATGCAAGCCNTNNTACACNATT-TCTTCGTNA 297 * ** ** ** **** ****** ********* * ** ** ** ** * ** * consensus_8529#0 TAAAGTTAGAAACTAGGTC-TCTCGACGTTAAACAGGTTCACAAGATAGTGATATGGGGA 327 consensus_8529#1 TCAA-TTAGAAACTATCTCGTTCCCAATTCCAGCACCCTNGGGGATCAANTATTT----- 351 * ** ********** ** * * * * * ** * * ** * consensus_8529#0 TCAATTCAACACAGGATGGCCTCTTGTCTTCTTATTTTAGCTGCAAGTTTACGTTGGACC 387 consensus_8529#1 CTAAAACNGGNGGCGGTCGCGGGTNGAAACNCCNCCTGNGGTTCCCTTTANTGAANGGTT 411 ** * * * ** * * * * * * ** * * consensus_8529#0 AGATCCTCAGGAAGAGTCCAATACGGCATAGGAACCGGCCATCTATCAGGGTGAACACTA 447 consensus_8529#1 GAATTCCCAACNAGGGGTTAAC----CCCGGGCCCTNNCCGTTTCCCNNTNTTAA-ATTG 466 ** * ** ** * ** * ** * ** * * * * ** * * consensus_8529#0 TCATCTCCAGCAATCTTCCAATCAAGCACATCAGATGGATTACCATGGCTATGTTCAGCA 507 consensus_8529#1 TTTNCCCCCCAAATCCCCANNAAATTCAAACCANA------ACCG-GNTTTTNCCCNG-- 517 * * ** **** * * ** * ** * *** * * * * * consensus_8529#0 ACAGCCCCTTTTGTCTTAAAATACTTCAG-GATCTCGCGAATCTCACACCATGATAGGAA 566 consensus_8529#1 --GGGTCCAAAGATTTAAANACCCAAAANTGGGGTTNCCCCCCNCCCTCCAAGGGGAANT 575 * ** * * ** * * * * * * * * * *** * consensus_8529#0 TGCGGTGCCTTCTACACCCTCATCGTAGAAGTTCATGCCAACAAAGGTTCCATCGAAACA 626 consensus_8529#1 TTTGGGCCCTTTAANG-------------------------------------------- 591 * ** **** * consensus_8529#0 AAGAAGAGGCCCTCCAATGCCAGCCTTAGTGGTTGTACATCCAGAGTAACTAAGAAATTT 686 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 GCAGTCATGTGTGACAACAGTGGGAAATTGTTGCCCTCTTGCAGCCATTAATCTGCCAGA 746 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 TTCGAAGATACGCCCTACAGCTAGTAATTTCCGACAGTTATGCCCATAAGGTTGAATTTT 806 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 CACTGGTTGGCGAACACAGTGATCCTTCACACTGACTAGAGCAACATTGTAATGTAAATT 866 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 ATAATGTTGTACTGTCCCTACGGTGCGCAGATTATTTGGAAGCAACACTTCAATCCTCAA 926 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 GTTTTCAGCAATCCTGTTTTCATCACTAGAATCCTTAAGTAAGTTCGCTGAAGTCAGAAT 986 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 AGTGGCACACTCGTTCCATTCAATAAAGAAACCCGTGCATGCAAAAGTTCGTTTATCTCC 1046 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 GTTGAATGAAGCAAGTGCGACAGTATTTTCGCATATGCTAGAGGCAACATCTTCACTTAG 1106 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 TTCACTCCAGACACCTTTACCAAATATGTCACCAAAAGGCTCTTCAAAAGTATAGGCCAA 1166 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 AATCATGCCATCTTTCGATTTTGGGGGCTCAGGATAGCCCAAGGATTCTAGATCCCCGTA 1226 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 TCGATCCTTGTTAAGAACATCTCTATGTACTTGATGAGAGCTAGGCATCTCACCGCTGGG 1286 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 ACTTTCTCCAACCCAGACTTCCTTCAAAGCCTCTAACCGCGCAGCAAATCTGACCTCATG 1346 consensus_8529#1 ------------------------------------------------------------ consensus_8529#0 ATCGAGTATACAATTCACAAGCGGTCAAGAACTCTATCCCCTGGCACAAA 1396 consensus_8529#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||