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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1396 fasta sequence
[TTTTTTGGAACGAAATAAGTACGTGCAACTCTTGTGATGAAGGGAGTACCACGGATGATTACCTATTTGTAGCACAAGAAGGGCATGGAAGACCATAGGCTATATGGGCCATCACAGTGCACGCTCGGACGTCCATCACTGGTCGGATGG-CCTCG-GGCAGTCGGGCTCAAAAGG-AGAGCACTTAAA-CACTACTCAGAAACATTAGTAATA-ATTTATGAAACCAAG-CACTATAATACATGC---AACACTAACTAGACAATAATCATTGTGATAAAGTTAGAAACTAGGTCTCTCGACGTTAAACAGGTTCACAAGATAGTGATATGGGGATCAATTCAACACAGGATGGCCTCTTGTCTTCTTATTTTAGCTGCAAGTTTACGTTGGACCAGATCCTCAGGAAGAGTCCAATACGGCATAGGAACCGGCCATCTATCAGGGTGAACACTATCATCTCCAGCAATCTTCCAATCAAGCACATCAGATGGATTACCATGGCTATGTTCAGCAACAGCCCCTTTTGTCTTAAAATACTTCAGGATCTCGCGAATCTCACACCATGATAGGAATGCGGTGCCTTCTACACCCTCATCGTAGAAGTTCATGCCAACAAAGGTT-CCATCGAAACAAAGAAGAGGCCCTCCAATGCCAGCCTTAGTGGTTGTACATCCAGAGTAACTAAGAAATTTGCAGTCATGTGTGACAACAGTGGGAAATTGTTGCCCTCTTGCAGCCATTAATCTGCCAGATTCGAAGATACGCCCTACAGCTAGTAATTTCCGACAGTTATGCCCATAAGGTTGAATTTTCACTGGTTGGCGAACACAGTGATCCTTCACACTGACTAGAGCAACATTGTAATGTAAATTATAATGTTGTACTGTCCCTACGGTGCGCAGATTATTTGGAAGCAACACTTCAATCCTCAAGTTTTCAGCAATCCTGTTTTCATCACTAGAATCCTTAAGTAAGTTCGCTGAAGTCAGAATAGTGGCACACTCGTTCCATTCAATAAAGAAACCCGTGCATGCAAAAGTTCGTTTATCTCCGTTGAATGAAGCAAGTGCGACAGTATTTTCGCATATGCTAGAGGCAACATCTTCACTTAGTTCACTCCAGACACCTTTACCAAATATGTCACCAAAAGGCTCTTCAAAAGTATAGGCCAAAATCATGCCATCTTTCGATTTTGGGGGCTCAGGATAGCCCAAGGATTCTAGATCCCCGTATCGATCCTTGTTAAGAACATCTCTATGTACTTGATGAGAGCTAGGCATCTCACCGCTGGGACTTTCTCCAACCCAGACTTCCTTCAAAGCCTCTAACCGCGCAGCAAATCTGACCTCATGATCGAGTATACAATTCACAAGCGGTCAAGAACTCTATCCCCTGGCACAAA]
[-] EMBL BI813720 [TTTTTTGGAACGAAATAAGTACGTGCAACTCTTGTGATGAAGGGAGTACCACGGATGATTACCTATTTGTAGCACAAGAAGGGCATGGAAGACCATAGGCTATATGGGCCATCACAGTGCACGCTCGGACGTCCATCACTGGTCGGATGG CCTCGTGGCAGTCGGGCTCAAAAGG AGAGCACTTAAACCACTACTCAGAAACATTAGTAATACATTTATGAAACCAAGCCACTATAATACATGCCAGACCACTAACTAGACAAT ]
[+] EMBL CA999042 [ TGAAACGAAATAAGTACGTGCAACTCTTGTGATGAAGGGAGTACAAAGGATGATTACATATTTGTAGCACAAGAAGGGCATGGAAGACCATAGGCTATATGGCCCATCACAGTGCACGCTCGGACGTCCATCACTGGTCGGATGGCCCTCG GGCAGTCGGGCTCAAAAGGCAGAGCACTTAAA CACTACTCAGAAACATTAGTAATA ATTTATGAAACCAAG CACTATAATACATGC AACACTAACTAGACAATAATCATTGTGATAAAGTTAGAAACTAGGTCTCTCGACGTTAAACAGGTTCACAAGATAGTGATATGGGGATCAATTCAACACAGGATGGCCTCTTGTCTTCTTATTTTAGCTGCAAGTTTACGTTGGACCAGATCCTCAGGAAGAGTCCAATACGGCATAGGAACCGGCCATCTATCAGGGTGAACACTATCATCTCCAGCAATCTTCCAATCAAGCACATCAGATGGATTACCATGGCTATGTTCAGCAACAGCCCCTTTTGTCTTAAAATACTTCAGGATCTCGCGAATCTCACACCATGATAGGAATGCGGTGCCTTCTAC ]
[+] EMBL CB631988 [ AAA CACTACTCAGAAACATTAGTAATA ATTTATGAAACCAAG CACTATAATACATGC AACACTAACTAGACAATAATCATTGTGATAAAGTTAGAAACTAGGTCTCTCGACGTTAAACAGGTTCACAAGATAGTGATATGGGGATCAATTCAACACAGGATGGCCTCTTGTCTTCTTATTTTAGCTGCAAGTTTACGTTGGACCAGATCCTCAGGAAGAGTCCAATACGGCATAGGAACCGGCCATCTATCAGGGTGAACACTATCATCTCCAGCAATCTTCCAATCAAGCACATCAGATGGATTACCATGGCTATGTTCAGCAACAGCCCCTTTTGTCTTAAAATACTTCAGGATCTCGCGAATCTCACACCATGATAGGAATGCGGTGCCTTCTACACCCTCATCGTAGAAGTTCATGCCAACAAAGGTT CCATCGAAACAAAGAAGAGGCCCTCCAATGCCAGCCTTAGTGGTTGTACATCCAGAGTAACTAAGAAATTTGCAGTCATGTGTGACAACAGTGGGAAATTGTTGCCCTCTTGCAGCCATTAATCTGCCAGATTCGAAGATACGCCCTACAGCTAGTAATTTCCGACAGTTATGCCCATAAGGTTGAATTTTCACTGGTTGGCGAACACAGTGATCCTTCACACTGACTAGAGCAACATTGTAATGTAAATTATAATGTTGTACTGTCCCTACGGTGCGCAGATTATTTGGAAGCAACACTTCAATCCTCAAGTTTTCAGCAATCCTGTTTTCATCACTAGAATCCTTAAGTAAGTTCGCTGAAGTCAGAATAGTGGCACACTCGTTCCATTCAATAAAGAAACCCGTGCATG ]
[-] EMBL CA765184 [ AAGNTTCCCATCGAANCAAAGAAGAGGCCCTCCAATGCCAGCCTTAGTGGTTGTACATCCAGAGTANCTAAGAAATTTGCAGTCATGTGTGACANCAGTGGGAAATTGTTGCCCTCTTGCAGCCATTAATCTGCCAGATTCGAAGATACGCCCTACAGCTAGTAATTTCCGACAGTTATGCCCATAAGGTTGAATTTTCACTGGTTGGCGAACACAGTGATCCTTCACACTGACTAGAGCAACATTGTAATGTAAATTATAATGTTGTACTGTCCCTACGGTGCGCAGATTATTTGGAAGCAACACTTCAATCCTCAAGTTTTCAGCAATCCTGTTTTCATCACTAGAATCCTTAAGTAAGTTCGCTGAAGTCAGAATAGTGGCACACTCGTTCCATTCAATAAAGAAACCCGTGCATGCAAAAGTTCGTTTATCTCCGTTGAATGAAGCAAGTGCGACAGTATTTTCGCATATGCTAGAGGCAACATCTTCACTTAGTTCACTCCAGACACCTTTACCAAATATGTCACCAAAAGGCTCTTCAAAAGTATAGGCCAAAATCATGCCATCTTTCGATTTTGGGGGCTCAGGATAGCCCAAGGATTCTAGATCCCCGTATCGATCCTTGTTAAGAACATCTCTATGTACTTGATGAGAGCTAGGCATCTCACCGCTGGGACTTTCTCCAACCCAGACTTCCTTCAAAGCCTCTAACCGCGCAGCAAATCTGACCTCATGATCGAGTATACAATTCACAAGCGGTCAAGAACTCTATCCCCTGGCACAAA]
consensusID : consensus_8529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[TCNNTANCNANTCTTGTTTTTTANTNTCTAAAACTGANACNAAATANGTACGTGCAAATCTTGTGATGAANGGAGTACAAAGGATGATTAGATNTTTGTAGCTAAGAANGGCATGGAACACCAATNGCTATATGGCCCATCACACTGACACGCTCGGACGTCCATCACTGGTCGGATGGCCCNCGGGCANTCGGGCTCCTAATGCANAACACTTGCACACTGGGNGCAAACNTTCCTNCTCTTGATNAANCCAANCACTATNTTACATGCAAGCCNTNNTACACNATTTCTTCGTNATCAATTAGAAACTATCTCGTTCCCAATTCCAGCACCCTNGGGGATCAANTATTTCTAAAACNGGNGGCGGTCGCGGGTNGAAACNCCNCCTGNGGTTCCCTTTANTGAANGGTTGAATTCCCAACNAGGGGTTAACCCCGGGCCCTNNCCGTTTCCCNNTNTTAAATTGTTTNCCCCCCAAATCCCCANNAAATTCAAACCANAACCGGNTTTTNCCCNGGGGTCCAAAGATTTAAANACCCAAAANTGGGGTTNCCCCCCNCCCTCCAAGGGGAANTTTTGGGCCCTTTAANG]
[-] EMBL AA753972 [TCNNTANCNANTCTTGTTTTTTANTNTCTAAAACTGANACNAAATANGTACGTGCAAATCTTGTGATGAANGGAGTACAAAGGATGATTAGATNTTTGTAGCTAAGAANGGCATGGAACACCAATNGCTATATGGCCCATCACACTGACACGCTCGGACGTCCATCACTGGTCGGATGGCCCNCGGGCANTCGGGCTCCTAATGCANAACACTTGCACACTGGGNGCAAACNTTCCTNCTCTTGATNAANCCAANCACTATNTTACATGCAAGCCNTNNTACACNATTTCTTCGTNATCAATTAGAAACTATCTCGTTCCCAATTCCAGCACCCTNGGGGATCAANTATTTCTAAAACNGGNGGCGGTCGCGGGTNGAAACNCCNCCTGNGGTTCCCTTTANTGAANGGTTGAATTCCCAACNAGGGGTTAACCCCGGGCCCTNNCCGTTTCCCNNTNTTAAATTGTTTNCCCCCCAAATCCCCANNAAATTCAAACCANAACCGGNTTTTNCCCNGGGGTCCAAAGATTTAAANACCCAAAANTGGGGTTNCCCCCCNCCCTCCAAGGGGAANTTTTGGGCCCTTTAANG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8529#0 ------------------------TTTTT-----TGGAACGAAATAAGTACGTGCAACTC 31
consensus_8529#1 TCNNTANCNANTCTTGTTTTTTANTNTCTAAAACTGANACNAAATANGTACGTGCAAATC 60
* * * ** ** ***** ********** **
consensus_8529#0 TTGTGATGAAGGGAGTACCACGGATGATTACCTATTTGTAGCACAAGAAGGGCATGGAAG 91
consensus_8529#1 TTGTGATGAANGGAGTACAAAGGATGATTAGATNTTTGTAGC-TAAGAANGGCATGGAAC 119
********** ******* * ********* * ******** ***** *********
consensus_8529#0 ACCATAGGCTATATGGGCCATCACAGTG-CACGCTCGGACGTCCATCACTGGTCGGATGG 150
consensus_8529#1 ACCAATNGCTATATGGCCCATCACACTGACACGCTCGGACGTCCATCACTGGTCGGATGG 179
**** ********* ******** ** *******************************
consensus_8529#0 CC-TCGGGCAGTCGGGCTCAAAAGG-AGAGCACTTAAACACTACTCAGAAACATTAGTAA 208
consensus_8529#1 CCCNCGGGCANTCGGGCTCCTAATGCANAACACTTGCACACTGGGNGCAAACNTTCCTNC 239
** ****** ******** ** * * * ***** ***** **** ** *
consensus_8529#0 TAATTTATGAAACCAAGCACTATAATACATGCAACACTAACTAGACAATAATCATTGTGA 268
consensus_8529#1 TC-TTGATNAANCCAANCACTATNTTACATGCAAGCCNTNNTACACNATT-TCTTCGTNA 297
* ** ** ** **** ****** ********* * ** ** ** ** * ** *
consensus_8529#0 TAAAGTTAGAAACTAGGTC-TCTCGACGTTAAACAGGTTCACAAGATAGTGATATGGGGA 327
consensus_8529#1 TCAA-TTAGAAACTATCTCGTTCCCAATTCCAGCACCCTNGGGGATCAANTATTT----- 351
* ** ********** ** * * * * * ** * * ** *
consensus_8529#0 TCAATTCAACACAGGATGGCCTCTTGTCTTCTTATTTTAGCTGCAAGTTTACGTTGGACC 387
consensus_8529#1 CTAAAACNGGNGGCGGTCGCGGGTNGAAACNCCNCCTGNGGTTCCCTTTANTGAANGGTT 411
** * * * ** * * * * * * ** * *
consensus_8529#0 AGATCCTCAGGAAGAGTCCAATACGGCATAGGAACCGGCCATCTATCAGGGTGAACACTA 447
consensus_8529#1 GAATTCCCAACNAGGGGTTAAC----CCCGGGCCCTNNCCGTTTCCCNNTNTTAA-ATTG 466
** * ** ** * ** * ** * ** * * * * ** * *
consensus_8529#0 TCATCTCCAGCAATCTTCCAATCAAGCACATCAGATGGATTACCATGGCTATGTTCAGCA 507
consensus_8529#1 TTTNCCCCCCAAATCCCCANNAAATTCAAACCANA------ACCG-GNTTTTNCCCNG-- 517
* * ** **** * * ** * ** * *** * * * * *
consensus_8529#0 ACAGCCCCTTTTGTCTTAAAATACTTCAG-GATCTCGCGAATCTCACACCATGATAGGAA 566
consensus_8529#1 --GGGTCCAAAGATTTAAANACCCAAAANTGGGGTTNCCCCCCNCCCTCCAAGGGGAANT 575
* ** * * ** * * * * * * * * * *** *
consensus_8529#0 TGCGGTGCCTTCTACACCCTCATCGTAGAAGTTCATGCCAACAAAGGTTCCATCGAAACA 626
consensus_8529#1 TTTGGGCCCTTTAANG-------------------------------------------- 591
* ** **** *
consensus_8529#0 AAGAAGAGGCCCTCCAATGCCAGCCTTAGTGGTTGTACATCCAGAGTAACTAAGAAATTT 686
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 GCAGTCATGTGTGACAACAGTGGGAAATTGTTGCCCTCTTGCAGCCATTAATCTGCCAGA 746
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 TTCGAAGATACGCCCTACAGCTAGTAATTTCCGACAGTTATGCCCATAAGGTTGAATTTT 806
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 CACTGGTTGGCGAACACAGTGATCCTTCACACTGACTAGAGCAACATTGTAATGTAAATT 866
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 ATAATGTTGTACTGTCCCTACGGTGCGCAGATTATTTGGAAGCAACACTTCAATCCTCAA 926
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 GTTTTCAGCAATCCTGTTTTCATCACTAGAATCCTTAAGTAAGTTCGCTGAAGTCAGAAT 986
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 AGTGGCACACTCGTTCCATTCAATAAAGAAACCCGTGCATGCAAAAGTTCGTTTATCTCC 1046
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 GTTGAATGAAGCAAGTGCGACAGTATTTTCGCATATGCTAGAGGCAACATCTTCACTTAG 1106
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 TTCACTCCAGACACCTTTACCAAATATGTCACCAAAAGGCTCTTCAAAAGTATAGGCCAA 1166
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 AATCATGCCATCTTTCGATTTTGGGGGCTCAGGATAGCCCAAGGATTCTAGATCCCCGTA 1226
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 TCGATCCTTGTTAAGAACATCTCTATGTACTTGATGAGAGCTAGGCATCTCACCGCTGGG 1286
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 ACTTTCTCCAACCCAGACTTCCTTCAAAGCCTCTAACCGCGCAGCAAATCTGACCTCATG 1346
consensus_8529#1 ------------------------------------------------------------
consensus_8529#0 ATCGAGTATACAATTCACAAGCGGTCAAGAACTCTATCCCCTGGCACAAA 1396
consensus_8529#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||