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Oryza sativa
cluster # 8540 cluster # 8540       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8540#0 length = 3024 sequences # 3  
consensus_8540#1 length = 703 sequences # 1  
consensus_8540#2 length = 444 sequences # 1  

consensusID : consensus_8540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 3024
fasta sequence
                              [CCCTTGACTTCCTCCCCCTTCTCTCCTCCTCCCACAAAACGTGACCGAATCCGGCTGATCCGAGCCCGCCGACCTCCCCGGCTTCCCCGATCCGGCGACGATGGATGGCGGCGGCGGAGGCGACGCCTTCGGGTCCGCGACCGCGCCGCTGGCCTGGCACGACTTCCTGGAGCGCATGCGCCAGCCCTCCGCCGCCGACTTCGTCAAGTCCATCAAGGGCTTTATCGTAACGTTCTCGAACAGAGCTCCTGACCCTGAACATGATAGTGCGGCTGTTCAAGAATTCCTGGAAAATATGGAAGGTGCTTTCAGGGCTCACACCCCCTGGGCTGGAAGTTCTGAAGAAGAACTAGAAAGTGCCGGGCCTTGAGAAATACGTTATGACAAAGCTGTTCAATCGGGTATTTGCTTCTGTCCCGGAAGATGTGAAGAGTGATGAAGAACTTTTTGAGAAGATGTCTTTGTTACAGCAGTTTATACGGCCTGAAAACTTGGATATCAAACCAGAATATCAAAGTGAAACATCATGGCTGCTTGCACAGAAGGAGCTGCAGAAGATAAACATGTATAAGGCTCCAAGGGATAAGCTTGCTTGCATCCTGAACTGCTGTAAAGTCATCAACAACCTACTTCTAAATGCGTCTATTGTATCAAATGAAAATCCCCCGGGAGCTGATGAATTCCTTCCAGTCCTCATCTATGTTACCATAAAGGTATGATTCACTACTTGTTAAAGTACTGGTTGATGATACAAATGAACCATCAAATATTGACAATATTATATTAAGTTGTTGGTGCTGTATTGGAGAAAGAAAATTTGCCCCCTTTGATATGGCACAGATTAGGTGTCGACTTGATGGTGACTATTTGTGTATTACCTACTCAACTTTGATATTTTCTAGAAAAAATATAAGCCTATTATTGGTGCAGTGGTACGTGATTTGTTGGGCACATTGCCTCTTAATAGAGTTGTCAGTGCGCTGTGCAACCTCATTTACTGTTGCTTCGTATTACTTTTAGTTCCAACTTCTACCTATCTATTATGATGCAGGTTCCATGTCTAATCTAATAGTGAGTTTTGTACTGAAATAGTTTGCCAGATTTGAGAGCAACCTTGTCATGCACTCATGCCCATCAGTACATGTGCTTAGAGCAACCATGAATCTGTGAACCATCAGTTGGGCATCCCTCCTCTAGCTAGGCACTACATCAGTTTTGATTACAAATGATGGTTAAACTTTCATTACAAACCTAATAGTTGGCATTTGAGTGGTTGTGGACTTGTTTTTGAAAACTGCAGCAAATGACCATAAAGGGCTTAAGATCAGATCATGTACGGTTATCACTTTACTTTTCTCTTCATTACCGGAAAGAGCTTGTCAACTACTGAATGGTAAGAGTTAATGATATATGTGCTCTTCTAGTTTGGCCTCTCAAGGTATTACGTGCTTCTGGAATTACTGCAGTTAGCCTAAACTACCCTTGCACCGCAATTCAGCATTAGTTGTAGTTTTGTTCTATCATCTGAACTACAATGTTATGATCCTTTTGCCTGAAAATCATCTGTAAAGTGTTTTTATTTGTCATTTAAATTAAGGTAGCCAAAAGAATTTAAGCAGTAGCTGTTCTTAATGCAGGCAAATCCTCCACAGTTACACTCAAATCTATTATATATACAGCGATACAGACGTCAATCACGGTTGGTGTCAGAAGCTCAGTATTTCTTTACAAACATCTTATCCGCTGAGTCTTTCATCTGGAACATTGATGGGGAATCATTATCAATGGATGAACGAGATTTCCAAAAGAAGATGGACTTGGCAAGGGAACGCATGTTGGGATTATCAGCTAGCTCAGAGAATCAGGACAACCAAAACAATCTTGATGTACGGGAGCAAAAATCACAAACACTGAAAGCTAGCAGGGATTCTGATGTCAATCTCTCTTTGAAAGATAATTTCCAAGGTCCTGGACTGGAAATGAGAAGGGACAGTGATGCAAGTAGTAACCCAGTTGAGCGTGTGCAATCGATTTCTGATTTGGAGAAGAAAGGAGCAGCCGAGCTTCTCAAGGATGATGACTTGAACAAAAAAATTCAAGAGTACCCATTCCTTTTTGCCCGCTCTGGTGATCTGACTGTTGCTGATGTAGAAAACCTTTTAAACTCCTACAAGCAGCTAGTACTAAAGTATGTAGCGCTTTCGCAAGGGATGGGTATCAACCTTGAAAACCCTCCTGTTCAGAGCATGCAAACTGTTTCTGATCTTGTGGAATCTGAGGAGCCTAAAAATGTGAAGAATGCAGTAAATTTCAGCGAAGGAAGCAGCAAAACCAGTGATGACATAAAAAATGATACTCTTTATTCAGAAGTAGACAACACGGGTACCCAACAAACTGCGGTTG-ACCCAAGTTATCAGAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCATGAGTTGTTGGTCAAGTATGGTTGGCCGTCGAAATACA-GGGAAAACGTTGTCAACGGCGGGTCATTCTCT--TATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCTCCTGAAGCCACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCAAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTTGCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATCGTCTTCTAGTTGTTGTCTTTAGCTGCTAGTACTAGTGCATACCGATGTTCGTCTTCTACAGATTAGTTATCACCGGTGTTTTGAGCACCTCAACTTCATTTGTTTGGTTTAAATGGACATAATTTCAGGGAACTATTCCTTCCCTGTCGATT]

[+] EMBL AK070551             [CCCTTGACTTCCTCCCCCTTCTCTCCTCCTCCCACAAAACGTGACCGAATCCGGCTGATCCGAGCCCGCCGACCTCCCCGGCTTCCCCGATCCGGCGACGATGGATGGCGGCGGCGGAGGCGACGCCTTCGGGTCCGCGACCGCGCCGCTGGCCTGGCACGACTTCCTGGAGCGCATGCGCCAGCCCTCCGCCGCCGACTTCGTCAAGTCCATCAAGGGCTTTATCGTAACGTTCTCGAACAGAGCTCCTGACCCTGAACATGATAGTGCGGCTGTTCAAGAATTCCTGGAAAATATGGAAGGTGCTTTCAGGGCTCACACCCCCTGGGCTGGAAGTTCTGAAGAAGAACTAGAAAGTGCCGGGCCTTGAGAAATACGTTATGACAAAGCTGTTCAATCGGGTATTTGCTTCTGTCCCGGAAGATGTGAAGAGTGATGAAGAACTTTTTGAGAAGATGTCTTTGTTACAGCAGTTTATACGGCCTGAAAACTTGGATATCAAACCAGAATATCAAAGTGAAACATCATGGCTGCTTGCACAGAAGGAGCTGCAGAAGATAAACATGTATAAGGCTCCAAGGGATAAGCTTGCTTGCATCCTGAACTGCTGTAAAGTCATCAACAACCTACTTCTAAATGCGTCTATTGTATCAAATGAAAATCCCCCGGGAGCTGATGAATTCCTTCCAGTCCTCATCTATGTTACCATAAAGGTATGATTCACTACTTGTTAAAGTACTGGTTGATGATACAAATGAACCATCAAATATTGACAATATTATATTAAGTTGTTGGTGCTGTATTGGAGAAAGAAAATTTGCCCCCTTTGATATGGCACAGATTAGGTGTCGACTTGATGGTGACTATTTGTGTATTACCTACTCAACTTTGATATTTTCTAGAAAAAATATAAGCCTATTATTGGTGCAGTGGTACGTGATTTGTTGGGCACATTGCCTCTTAATAGAGTTGTCAGTGCGCTGTGCAACCTCATTTACTGTTGCTTCGTATTACTTTTAGTTCCAACTTCTACCTATCTATTATGATGCAGGTTCCATGTCTAATCTAATAGTGAGTTTTGTACTGAAATAGTTTGCCAGATTTGAGAGCAACCTTGTCATGCACTCATGCCCATCAGTACATGTGCTTAGAGCAACCATGAATCTGTGAACCATCAGTTGGGCATCCCTCCTCTAGCTAGGCACTACATCAGTTTTGATTACAAATGATGGTTAAACTTTCATTACAAACCTAATAGTTGGCATTTGAGTGGTTGTGGACTTGTTTTTGAAAACTGCAGCAAATGACCATAAAGGGCTTAAGATCAGATCATGTACGGTTATCACTTTACTTTTCTCTTCATTACCGGAAAGAGCTTGTCAACTACTGAATGGTAAGAGTTAATGATATATGTGCTCTTCTAGTTTGGCCTCTCAAGGTATTACGTGCTTCTGGAATTACTGCAGTTAGCCTAAACTACCCTTGCACCGCAATTCAGCATTAGTTGTAGTTTTGTTCTATCATCTGAACTACAATGTTATGATCCTTTTGCCTGAAAATCATCTGTAAAGTGTTTTTATTTGTCATTTAAATTAAGGTAGCCAAAAGAATTTAAGCAGTAGCTGTTCTTAATGCAGGCAAATCCTCCACAGTTACACTCAAATCTATTATATATACAGCGATACAGACGTCAATCACGGTTGGTGTCAGAAGCTCAGTATTTCTTTACAAACATCTTATCCGCTGAGTCTTTCATCTGGAACATTGATGGGGAATCATTATCAATGGATGAACGAGATTTCCAAAAGAAGATGGACTTGGCAAGGGAACGCATGTTGGGATTATCAGCTAGCTCAGAGAATCAGGACAACCAAAACAATCTTGATGTACGGGAGCAAAAATCACAAACACTGAAAGCTAGCAGGGATTCTGATGTCAATCTCTCTTTGAAAGATAATTTCCAAGGTCCTGGACTGGAAATGAGAAGGGACAGTGATGCAAGTAGTAACCCAGTTGAGCGTGTGCAATCGATTTCTGATTTGGAGAAGAAAGGAGCAGCCGAGCTTCTCAAGGATGATGACTTGAACAAAAAAATTCAAGAGTACCCATTCCTTTTTGCCCGCTCTGGTGATCTGACTGTTGCTGATGTAGAAAACCTTTTAAACTCCTACAAGCAGCTAGTACTAAAGTATGTAGCGCTTTCGCAAGGGATGGGTATCAACCTTGAAAACCCTCCTGTTCAGAGCATGCAAACTGTTTCTGATCTTGTGGAATCTGAGGAGCCTAAAAATGTGAAGAATGCAGTAAATTTCAGCGAAGGAAGCAGCAAAACCAGTGATGACATAAAAAATGATACTCTTTATTCAGAAGTAGACAACACGGGTACCCAACAAACTGCGGTTG ACCCAAGTTATCAGAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCATGAGTTGTTGGTCAAGTATGGTTGGCCGTCGAAATACA GGGAAAACGTTGTCAACGGCGGGTCATTCTCTTATATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCTCCTGAAGCCACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCAAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTTGCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATCGTCTTCTAGTTGTTGTCTTTAGCTGCTAGTACTAGTGCATACCGATGTTCGTCTTCTACAGATTAGTTATCACCGGTGTTTTGAGCACCTCAACTTCATTTGTTTGGTTTAAATGGACATAATTTCAGGGAACTATTCC             ]
[-] EMBL CB628503             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACTGTTTCTGATCTTGTGGAATCTGAGGAGCCTAAAAATGTGAAGAATGCAGTAAATTTCAGCGAAGGAAGCAGCAAAACCAGTGATGACATAAAAAATGATACTCTTTATTCAGAAGTAGACAACACGGGTACCCAACAAACTGCGGTTG ACCCAAGTTATCAGAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCATGAGTTGTTGGTCAAGTATGGTTGGCCGTCGAAATACA GGGAAAACGTTGTCAACGGCGGGTCATTCTCT  TATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCTCCTGAAGCCACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCAAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTTGCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATCGTCTTCTAGTTGTTGTCTTTAGCTGCTAGTACTAGTGCATACCGATGTTCGTCTTCTACAGATTAGTTATCACCGGTGTTTTGAGCACCTCAACTTCATTTGTTTGGTTTAAATGGACATAATTTCAGGGAACTATTCCTTCCCTGTCGATT]
[+] EMBL BM420962             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTATTCAGAAGTAGACAACACGGGTACCC AC AACTGCGGTTGTACCCAAGTTATCAGAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCATGAGTTGTTGGTCAAGTATGGTTGGCCGTCGAAATACACGGGAAAACGTTGTCAACGGCGGGTCATTCTCT  TATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCTCCTGAAGCCACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCAAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTT CGGTTAATACCATTTTGGTAAACC TTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATCGTCTaaaaaaaaa                                                                                                                                           ]


>consensus_8540#0 CCCTTGACTTCCTCCCCCTTCTCTCCTCCTCCCACAAAACGTGACCGAATCCGGCTGATC CGAGCCCGCCGACCTCCCCGGCTTCCCCGATCCGGCGACGATGGATGGCGGCGGCGGAGG CGACGCCTTCGGGTCCGCGACCGCGCCGCTGGCCTGGCACGACTTCCTGGAGCGCATGCG CCAGCCCTCCGCCGCCGACTTCGTCAAGTCCATCAAGGGCTTTATCGTAACGTTCTCGAA CAGAGCTCCTGACCCTGAACATGATAGTGCGGCTGTTCAAGAATTCCTGGAAAATATGGA AGGTGCTTTCAGGGCTCACACCCCCTGGGCTGGAAGTTCTGAAGAAGAACTAGAAAGTGC CGGGCCTTGAGAAATACGTTATGACAAAGCTGTTCAATCGGGTATTTGCTTCTGTCCCGG AAGATGTGAAGAGTGATGAAGAACTTTTTGAGAAGATGTCTTTGTTACAGCAGTTTATAC GGCCTGAAAACTTGGATATCAAACCAGAATATCAAAGTGAAACATCATGGCTGCTTGCAC AGAAGGAGCTGCAGAAGATAAACATGTATAAGGCTCCAAGGGATAAGCTTGCTTGCATCC TGAACTGCTGTAAAGTCATCAACAACCTACTTCTAAATGCGTCTATTGTATCAAATGAAA ATCCCCCGGGAGCTGATGAATTCCTTCCAGTCCTCATCTATGTTACCATAAAGGTATGAT TCACTACTTGTTAAAGTACTGGTTGATGATACAAATGAACCATCAAATATTGACAATATT ATATTAAGTTGTTGGTGCTGTATTGGAGAAAGAAAATTTGCCCCCTTTGATATGGCACAG ATTAGGTGTCGACTTGATGGTGACTATTTGTGTATTACCTACTCAACTTTGATATTTTCT AGAAAAAATATAAGCCTATTATTGGTGCAGTGGTACGTGATTTGTTGGGCACATTGCCTC TTAATAGAGTTGTCAGTGCGCTGTGCAACCTCATTTACTGTTGCTTCGTATTACTTTTAG TTCCAACTTCTACCTATCTATTATGATGCAGGTTCCATGTCTAATCTAATAGTGAGTTTT GTACTGAAATAGTTTGCCAGATTTGAGAGCAACCTTGTCATGCACTCATGCCCATCAGTA CATGTGCTTAGAGCAACCATGAATCTGTGAACCATCAGTTGGGCATCCCTCCTCTAGCTA GGCACTACATCAGTTTTGATTACAAATGATGGTTAAACTTTCATTACAAACCTAATAGTT GGCATTTGAGTGGTTGTGGACTTGTTTTTGAAAACTGCAGCAAATGACCATAAAGGGCTT AAGATCAGATCATGTACGGTTATCACTTTACTTTTCTCTTCATTACCGGAAAGAGCTTGT CAACTACTGAATGGTAAGAGTTAATGATATATGTGCTCTTCTAGTTTGGCCTCTCAAGGT ATTACGTGCTTCTGGAATTACTGCAGTTAGCCTAAACTACCCTTGCACCGCAATTCAGCA TTAGTTGTAGTTTTGTTCTATCATCTGAACTACAATGTTATGATCCTTTTGCCTGAAAAT CATCTGTAAAGTGTTTTTATTTGTCATTTAAATTAAGGTAGCCAAAAGAATTTAAGCAGT AGCTGTTCTTAATGCAGGCAAATCCTCCACAGTTACACTCAAATCTATTATATATACAGC GATACAGACGTCAATCACGGTTGGTGTCAGAAGCTCAGTATTTCTTTACAAACATCTTAT CCGCTGAGTCTTTCATCTGGAACATTGATGGGGAATCATTATCAATGGATGAACGAGATT TCCAAAAGAAGATGGACTTGGCAAGGGAACGCATGTTGGGATTATCAGCTAGCTCAGAGA ATCAGGACAACCAAAACAATCTTGATGTACGGGAGCAAAAATCACAAACACTGAAAGCTA GCAGGGATTCTGATGTCAATCTCTCTTTGAAAGATAATTTCCAAGGTCCTGGACTGGAAA TGAGAAGGGACAGTGATGCAAGTAGTAACCCAGTTGAGCGTGTGCAATCGATTTCTGATT TGGAGAAGAAAGGAGCAGCCGAGCTTCTCAAGGATGATGACTTGAACAAAAAAATTCAAG AGTACCCATTCCTTTTTGCCCGCTCTGGTGATCTGACTGTTGCTGATGTAGAAAACCTTT TAAACTCCTACAAGCAGCTAGTACTAAAGTATGTAGCGCTTTCGCAAGGGATGGGTATCA ACCTTGAAAACCCTCCTGTTCAGAGCATGCAAACTGTTTCTGATCTTGTGGAATCTGAGG AGCCTAAAAATGTGAAGAATGCAGTAAATTTCAGCGAAGGAAGCAGCAAAACCAGTGATG ACATAAAAAATGATACTCTTTATTCAGAAGTAGACAACACGGGTACCCAACAAACTGCGG TTGACCCAAGTTATCAGAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCAT GAGTTGTTGGTCAAGTATGGTTGGCCGTCGAAATACAGGGAAAACGTTGTCAACGGCGGG TCATTCTCTTATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCT CCTGAAGCCACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCTGGAAA CTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAA GCAAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTT GATTTTGCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATA TCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATCGTCTTCTA GTTGTTGTCTTTAGCTGCTAGTACTAGTGCATACCGATGTTCGTCTTCTACAGATTAGTT ATCACCGGTGTTTTGAGCACCTCAACTTCATTTGTTTGGTTTAAATGGACATAATTTCAG GGAACTATTCCTTCCCTGTCGATT



consensusID : consensus_8540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [GAATGCAGTAAATTTCAGCGAAGGAAGCAGCAAAACCAGTGATGACATAAAAAATGATACTCTTTATTCAGAAGTAGACAACACGGGTACCCAACAAACTGCGGTTGACCCAAGTTATCAGAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCATGAGTTGTTGGTCAAGTATGGTTGGCCGTCGAAATACAGGGAAAACGTTGTCAACGGCGGGTCATTCTCTTATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCTCCTGAAGCCACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCAAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTTGCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATGGTGTTCTAGTTGTTGTNTTTAAAACGCCGCCATCCATCGTCGCCGGATCGGGGAAGCCGGGGAGAGTCGGCGGGCTCGGATCAGCCGGATTCGGTCACGTTTTGTGGGAGGAGGAGAGAAGGGGGAG]

[-] EMBL CB628502             [GAATGCAGTAAATTTCAGCGAAGGAAGCAGCAAAACCAGTGATGACATAAAAAATGATACTCTTTATTCAGAAGTAGACAACACGGGTACCCAACAAACTGCGGTTGACCCAAGTTATCAGAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCATGAGTTGTTGGTCAAGTATGGTTGGCCGTCGAAATACAGGGAAAACGTTGTCAACGGCGGGTCATTCTCTTATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCTCCTGAAGCCACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCAAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTTGCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATGGTGTTCTAGTTGTTGTNTTTAAAACGCCGCCATCCATCGTCGCCGGATCGGGGAAGCCGGGGAGAGTCGGCGGGCTCGGATCAGCCGGATTCGGTCACGTTTTGTGGGAGGAGGAGAGAAGGGGGAG]


>consensus_8540#1 GAATGCAGTAAATTTCAGCGAAGGAAGCAGCAAAACCAGTGATGACATAAAAAATGATAC TCTTTATTCAGAAGTAGACAACACGGGTACCCAACAAACTGCGGTTGACCCAAGTTATCA GAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCATGAGTTGTTGGTCAAGT ATGGTTGGCCGTCGAAATACAGGGAAAACGTTGTCAACGGCGGGTCATTCTCTTATATCA AGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCTCCTGAAGCCACAAAAT GTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCTGGAAACTAGAATATAGAGATT CTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCAAAGCTCCTTGTCC CGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTTGCGGTTAATA CCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTA GATCCAAGAGAAAATGGCATGAAACATAATTTGATGGTGTTCTAGTTGTTGTNTTTAAAA CGCCGCCATCCATCGTCGCCGGATCGGGGAAGCCGGGGAGAGTCGGCGGGCTCGGATCAG CCGGATTCGGTCACGTTTTGTGGGAGGAGGAGAGAAGGGGGAG



consensusID : consensus_8540#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence
                              [AGATCAACCTGAACATGCATGAGTTGTTGTCAAGTATGGTTGCCGTCGAAATACAGGGAAAACGTTGTCAACGGCGGGTCATTCTCTTATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTCATTGCTGTGCTCCTGAAGCCAACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCCTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTTCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATCGTCTAAAAAAAAAAA]

[+] EMBL BM038325             [AGATCAACCTGAACATGCATGAGTTGTTGTCAAGTATGGTTGCCGTCGAAATACAGGGAAAACGTTGTCAACGGCGGGTCATTCTCTTATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTCATTGCTGTGCTCCTGAAGCCAACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCCTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTTCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATCGTCTAAAAAAAAAAA]


>consensus_8540#2 AGATCAACCTGAACATGCATGAGTTGTTGTCAAGTATGGTTGCCGTCGAAATACAGGGAA AACGTTGTCAACGGCGGGTCATTCTCTTATATCAAGGGGTGACAACTGGTTACAGAGAAG TGGGTCATTGCTGTGCTCCTGAAGCCAACAAAATGTAAATGCTGGAAACTAGAATATAGA GATTCAAGTCCCCTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGAT CAAGATTCATTCTGCTGAAGCAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGT TATGGACTCTTCAAGTTTGATTTTCGGTTAATACCATTTTGGTAAACCATTTTACTTTTG TAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACAT AATTTGATCGTCTAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8540#0      CCCTTGACTTCCTCCCCCTTCTCTCCTCCTCCCACAAAACGTGACCGAATCCGGCTGATC 60
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      CGAGCCCGCCGACCTCCCCGGCTTCCCCGATCCGGCGACGATGGATGGCGGCGGCGGAGG 120
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      CGACGCCTTCGGGTCCGCGACCGCGCCGCTGGCCTGGCACGACTTCCTGGAGCGCATGCG 180
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      CCAGCCCTCCGCCGCCGACTTCGTCAAGTCCATCAAGGGCTTTATCGTAACGTTCTCGAA 240
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      CAGAGCTCCTGACCCTGAACATGATAGTGCGGCTGTTCAAGAATTCCTGGAAAATATGGA 300
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      AGGTGCTTTCAGGGCTCACACCCCCTGGGCTGGAAGTTCTGAAGAAGAACTAGAAAGTGC 360
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      CGGGCCTTGAGAAATACGTTATGACAAAGCTGTTCAATCGGGTATTTGCTTCTGTCCCGG 420
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      AAGATGTGAAGAGTGATGAAGAACTTTTTGAGAAGATGTCTTTGTTACAGCAGTTTATAC 480
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      GGCCTGAAAACTTGGATATCAAACCAGAATATCAAAGTGAAACATCATGGCTGCTTGCAC 540
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      AGAAGGAGCTGCAGAAGATAAACATGTATAAGGCTCCAAGGGATAAGCTTGCTTGCATCC 600
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TGAACTGCTGTAAAGTCATCAACAACCTACTTCTAAATGCGTCTATTGTATCAAATGAAA 660
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      ATCCCCCGGGAGCTGATGAATTCCTTCCAGTCCTCATCTATGTTACCATAAAGGTATGAT 720
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TCACTACTTGTTAAAGTACTGGTTGATGATACAAATGAACCATCAAATATTGACAATATT 780
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      ATATTAAGTTGTTGGTGCTGTATTGGAGAAAGAAAATTTGCCCCCTTTGATATGGCACAG 840
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      ATTAGGTGTCGACTTGATGGTGACTATTTGTGTATTACCTACTCAACTTTGATATTTTCT 900
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      AGAAAAAATATAAGCCTATTATTGGTGCAGTGGTACGTGATTTGTTGGGCACATTGCCTC 960
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TTAATAGAGTTGTCAGTGCGCTGTGCAACCTCATTTACTGTTGCTTCGTATTACTTTTAG 1020
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TTCCAACTTCTACCTATCTATTATGATGCAGGTTCCATGTCTAATCTAATAGTGAGTTTT 1080
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      GTACTGAAATAGTTTGCCAGATTTGAGAGCAACCTTGTCATGCACTCATGCCCATCAGTA 1140
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      CATGTGCTTAGAGCAACCATGAATCTGTGAACCATCAGTTGGGCATCCCTCCTCTAGCTA 1200
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      GGCACTACATCAGTTTTGATTACAAATGATGGTTAAACTTTCATTACAAACCTAATAGTT 1260
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      GGCATTTGAGTGGTTGTGGACTTGTTTTTGAAAACTGCAGCAAATGACCATAAAGGGCTT 1320
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      AAGATCAGATCATGTACGGTTATCACTTTACTTTTCTCTTCATTACCGGAAAGAGCTTGT 1380
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      CAACTACTGAATGGTAAGAGTTAATGATATATGTGCTCTTCTAGTTTGGCCTCTCAAGGT 1440
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      ATTACGTGCTTCTGGAATTACTGCAGTTAGCCTAAACTACCCTTGCACCGCAATTCAGCA 1500
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TTAGTTGTAGTTTTGTTCTATCATCTGAACTACAATGTTATGATCCTTTTGCCTGAAAAT 1560
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      CATCTGTAAAGTGTTTTTATTTGTCATTTAAATTAAGGTAGCCAAAAGAATTTAAGCAGT 1620
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      AGCTGTTCTTAATGCAGGCAAATCCTCCACAGTTACACTCAAATCTATTATATATACAGC 1680
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      GATACAGACGTCAATCACGGTTGGTGTCAGAAGCTCAGTATTTCTTTACAAACATCTTAT 1740
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      CCGCTGAGTCTTTCATCTGGAACATTGATGGGGAATCATTATCAATGGATGAACGAGATT 1800
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TCCAAAAGAAGATGGACTTGGCAAGGGAACGCATGTTGGGATTATCAGCTAGCTCAGAGA 1860
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      ATCAGGACAACCAAAACAATCTTGATGTACGGGAGCAAAAATCACAAACACTGAAAGCTA 1920
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      GCAGGGATTCTGATGTCAATCTCTCTTTGAAAGATAATTTCCAAGGTCCTGGACTGGAAA 1980
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TGAGAAGGGACAGTGATGCAAGTAGTAACCCAGTTGAGCGTGTGCAATCGATTTCTGATT 2040
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TGGAGAAGAAAGGAGCAGCCGAGCTTCTCAAGGATGATGACTTGAACAAAAAAATTCAAG 2100
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      AGTACCCATTCCTTTTTGCCCGCTCTGGTGATCTGACTGTTGCTGATGTAGAAAACCTTT 2160
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TAAACTCCTACAAGCAGCTAGTACTAAAGTATGTAGCGCTTTCGCAAGGGATGGGTATCA 2220
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      ACCTTGAAAACCCTCCTGTTCAGAGCATGCAAACTGTTTCTGATCTTGTGGAATCTGAGG 2280
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ------------------------------------------------------------
                                                                                  

consensus_8540#0      AGCCTAAAAATGTGAAGAATGCAGTAAATTTCAGCGAAGGAAGCAGCAAAACCAGTGATG 2340
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ----------------GAATGCAGTAAATTTCAGCGAAGGAAGCAGCAAAACCAGTGATG 44
                                                                                  

consensus_8540#0      ACATAAAAAATGATACTCTTTATTCAGAAGTAGACAACACGGGTACCCAACAAACTGCGG 2400
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      ACATAAAAAATGATACTCTTTATTCAGAAGTAGACAACACGGGTACCCAACAAACTGCGG 104
                                                                                  

consensus_8540#0      TTGACCCAAGTTATCAGAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCAT 2460
consensus_8540#2      ----------------------------------------AGATCAACCTGAACATGCAT 20
consensus_8540#1      TTGACCCAAGTTATCAGAAGGCACAGCAGGATGAAGCATCAGATCAACCTGAACATGCAT 164
                                                              ********************

consensus_8540#0      GAGTTGTTGGTCAAGTATGGTTGGCCGTCGAAATACAGGGAAAACGTTGTCAACGGCGGG 2520
consensus_8540#2      GAGTTGTTG-TCAAGTATGGTTG-CCGTCGAAATACAGGGAAAACGTTGTCAACGGCGGG 78
consensus_8540#1      GAGTTGTTGGTCAAGTATGGTTGGCCGTCGAAATACAGGGAAAACGTTGTCAACGGCGGG 224
                      ********* ************* ************************************

consensus_8540#0      TCATTCTCTTATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCT 2580
consensus_8540#2      TCATTCTCTTATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGT-CATTGCTGTGCT 137
consensus_8540#1      TCATTCTCTTATATCAAGGGGTGACAACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCT 284
                      *********************************************** ************

consensus_8540#0      CCTGAAGCCA-CAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCC-TGGA 2638
consensus_8540#2      CCTGAAGCCAACAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCCCTGGA 197
consensus_8540#1      CCTGAAGCCA-CAAAATGTAAATGCTGGAAACTAGAATATAGAGATTCAAGTCCC-TGGA 342
                      ********** ******************************************** ****

consensus_8540#0      AACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTG 2698
consensus_8540#2      AACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTG 257
consensus_8540#1      AACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTG 402
                      ************************************************************

consensus_8540#0      AAGCAAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGT 2758
consensus_8540#2      AAGCAA-GCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGT 316
consensus_8540#1      AAGCAAAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGT 462
                      ****** *****************************************************

consensus_8540#0      TTGATTTTGCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAA 2818
consensus_8540#2      TTGATTTT-CGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAA 375
consensus_8540#1      TTGATTTTGCGGTTAATACCATTTTGGTAAACCATTTTACTTTTGTAGTTCAAATTAAAA 522
                      ******** ***************************************************

consensus_8540#0      TATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATCGTCTTC 2878
consensus_8540#2      TATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATCGTCTAA 435
consensus_8540#1      TATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACATAATTTGATGGTGTTC 582
                      ***************************************************** ** *  

consensus_8540#0      TAGTTGTTGTCTTTAGCTGCTAGTACTAGTGCATACCGATGTTCGTCTTCTACAGATTAG 2938
consensus_8540#2      AAAAAAAAA--------------------------------------------------- 444
consensus_8540#1      TAGTTGTTGTNTTTAA-----AACGCCGCCATCCATCGTCGC-CGGATCGGGGAAGCCGG 636
                       *                                                          

consensus_8540#0      TTATCACCGGTGT-TTTGAGCACCTCAACTTCATTTGTTTGGTTTAAATGGACATAATTT 2997
consensus_8540#2      ------------------------------------------------------------
consensus_8540#1      GGAGAGTCGGCGGGCTCGGATCAGCCGGATTCGGTCACGTTTTGTGGGAGGAGGAGAGAA 696
                                                                                  

consensus_8540#0      CAGGGAACTATTCCTTCCCTGTCGATT 3024
consensus_8540#2      ---------------------------
consensus_8540#1      GGGGGAG-------------------- 703
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)